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First working prototype of Junifer #3

Merged
fraimondo merged 293 commits from dev into main 2022-09-12 19:42:05 +00:00
Conversation 0 Commits 293 Files changed 121 +10046 -1428

2022-09-12

Synchon Mandal
docs: improve understanding/data.rst
1543215157
2022-09-12 19:51:01 +02:00
Synchon Mandal
docs: improve understanding/index.rst
4e7c7711c8
2022-09-12 19:50:38 +02:00
Synchon Mandal
docs: add new files for understanding/
e789350c62
2022-09-12 19:49:45 +02:00
Fede Raimondo
Add dev env yaml file for conda
53b3c81226
2022-09-12 18:49:36 +02:00
Synchon Mandal
chore: add missing imports in junifer/__init__.py
fedab6239c
2022-09-12 18:47:13 +02:00
Synchon Mandal
chore: update project structure in README
19bd73a2c3
2022-09-12 18:32:23 +02:00
Fede Raimondo
Merge pull request #49 from juaml/refactor/pipeline 
refactor: junifer.pipeline
293e32dd55
2022-09-12 18:29:06 +02:00
Synchon Mandal
chore: lint
0b061a2003
2022-09-12 18:05:24 +02:00
Synchon Mandal
fix: import fixes
83d9c06bdb
2022-09-12 18:04:46 +02:00
Fede Raimondo
Update latest.inc comments
bee5b151d8
2022-09-12 18:04:43 +02:00
Synchon Mandal
refactor: revert moving of MarkerCollection
c20eef11b1
2022-09-12 17:59:46 +02:00
Synchon Mandal
refactor: move MarkerCollection and PipelineStepMixin to junifer/pipeline
8a1134a2b2
2022-09-12 15:45:13 +02:00
Synchon Mandal
docs: update base branch for PR in contribution.rst
79788609a8
2022-09-12 14:39:22 +02:00
Synchon Mandal
docs: add faq.rst
2d213fb5a2
2022-09-12 14:00:46 +02:00
Fede Raimondo
Adding more structure to the docs
71717c9aa0
2022-09-12 13:32:00 +02:00
Fede Raimondo
Fix instructions for building docs locally
c6b546d162
2022-09-12 09:41:46 +02:00

2022-09-11

Synchon Mandal
chore: remove -U from pip install in installation.rst
216a5192a6
2022-09-11 14:14:55 +02:00
Synchon Mandal
chore: make toctree numbered
d81d90f073
2022-09-11 14:13:21 +02:00
Synchon Mandal
chore: replace contribution.rst example with junifer one
eb74c51773
2022-09-11 14:12:38 +02:00
Synchon Mandal
chore: improve contribution.rst
5048af05d8
2022-09-11 14:12:23 +02:00
Synchon Mandal
chore: improve installation.rst
316259969b
2022-09-11 14:10:37 +02:00
Synchon Mandal
chore: lint examples
1ce35aae1d
2022-09-11 14:08:50 +02:00

2022-09-09

Fede Raimondo
flake
83dda3cb72
2022-09-09 19:34:40 +02:00
Fede Raimondo
Started restructuring the DOC
08dfd3331e
2022-09-09 18:50:10 +02:00
Fede Raimondo
Merge pull request #30 from juaml/update/readme 
docs: improve documentation
f34618efcd
2022-09-09 18:02:07 +02:00
Synchon Mandal
docs: fix links.inc
b47dd8a473
2022-09-09 16:14:48 +02:00
Synchon Mandal
docs: fix numbering in contribution.rst
c3c503f34f
2022-09-09 16:14:30 +02:00
Synchon Mandal
docs: add contribution.rst
5ad92fa2f5
2022-09-09 16:03:03 +02:00
Synchon Mandal
docs: update installation.rst
562189b1a7
2022-09-09 16:02:25 +02:00
Synchon Mandal
docs: add about for junifer in index.rst
c183095f31
2022-09-09 16:01:58 +02:00

2022-09-08

Synchon Mandal
docs: update README.md with shields and content
ece51af1b0
2022-09-08 16:48:05 +02:00
Fede Raimondo
Dman flake
888bb00012
2022-09-08 15:21:49 +02:00
Fede Raimondo
Fix doc
63a993f6fc
2022-09-08 15:20:26 +02:00
Fede Raimondo
Fix typing + rename base classes to concrete + fix some tests
d776730f32
2022-09-08 15:14:26 +02:00
Synchon Mandal
fix: correct import for BIDS Datalad datagrabber example
cd89dc7184
2022-09-08 12:20:52 +02:00
Synchon Mandal
fix: correct references for api.rst
12a7405738
2022-09-08 12:06:15 +02:00
Synchon Mandal
fix: pass autosummary check for datalad_base.py
25a2344458
2022-09-08 12:05:45 +02:00
Fede Raimondo
Merge pull request #29 from juaml/fix/ci 
fix: CI
153c8918da
2022-09-08 11:50:55 +02:00
Synchon Mandal
chore: black formatting for datagrabbers.py
771eca9993
2022-09-08 11:25:32 +02:00
Synchon Mandal
fix: revert process_meta() in storage/utils.py
c62132abdd
2022-09-08 11:25:12 +02:00
Synchon Mandal
fix: revert test_store_table() test for test_sqlite.py
2d328201cb
2022-09-08 11:24:52 +02:00
Synchon Mandal
fix: correct argument name for _save_upsert() in test_sqlite.py
a09bb8587d
2022-09-08 11:24:28 +02:00
Synchon Mandal
fix: correct argument name for _save_upsert() in sqlite.py
5a29b4a20a
2022-09-08 11:23:42 +02:00
Synchon Mandal
chore: isort and black fix for test_multiple.py
ce9b063e27
2022-09-08 11:23:22 +02:00
Synchon Mandal
chore: black formatting for pattern.py
fc66c07ae2
2022-09-08 11:23:05 +02:00
Fede Raimondo
Revert "Fix docstrings" 
This reverts commit b61186b1ce.
705b37647a
2022-09-08 11:07:29 +02:00
Fede Raimondo
Fix docstrings
6807871f34
2022-09-08 11:07:23 +02:00
Fede Raimondo
Fix docstrings
b61186b1ce
2022-09-08 11:06:19 +02:00
Fede Raimondo
Fix datagrabbers + add basic test for multiple datagrabber
d563eed2a2
2022-09-08 10:22:34 +02:00

2022-09-05

Synchon Mandal
refactor: improve imports for data sub-package
c26237f3c7
2022-09-05 15:07:08 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in test_atlases.py
e4ff6649e5
2022-09-05 15:07:08 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in data/atlases.py
748dfc235d
2022-09-05 15:07:08 +02:00
Synchon Mandal
refactor: rename test_atlas.py to test_atlases.py to match module name
b8a2c5ae95
2022-09-05 15:07:08 +02:00
Synchon Mandal
update: add black env in tox.ini
35275c6a7c
2022-09-05 14:11:04 +02:00
Synchon Mandal
update: add black config in pyproject.toml
7b6c743c6d
2022-09-05 14:11:04 +02:00
Synchon Mandal
update: add partial unit tests for junifer/stats.py
9758a33494
2022-09-05 14:10:37 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in junifer/stats.py
402f00c48e
2022-09-05 14:10:37 +02:00

2022-09-02

Synchon Mandal
fix: rename test files to ease pytest file search
6bd8da72a9
2022-09-02 17:46:49 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in test_main.py
6089c2a367
2022-09-02 13:14:34 +02:00
Synchon Mandal
refactor: improve imports for api sub-package
2c1ce69aee
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in test_cli.py
d69e240c9b
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in api/cli.py
97ab7bd6e5
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in api/decorators.py
cd0b9b5597
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in test_functions.py
1b4030ecc6
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in api/functions.py
bce678bd1d
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in test_parser.py
7bd6b6b838
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in api/parser.py
ae5dc9b396
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in test_registry.py
2ca98c3a0e
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in api/registry.py
ccaaa4e8ed
2022-09-02 13:02:09 +02:00
Synchon Mandal
refactor: improve imports for testing sub-package
509efe10f5
2022-09-02 12:33:53 +02:00
Synchon Mandal
chore: update code style in testing/registry.py
2dda0b240b
2022-09-02 12:33:53 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in testing/datagrabbers.py
0b8424b670
2022-09-02 12:33:53 +02:00
Synchon Mandal
refactor: remove imports from configs/__init__.py
580e3c427a
2022-09-02 11:55:53 +02:00
Synchon Mandal
refactor: improve imports for configs sub-package
e8a8da8ecf
2022-09-02 11:55:53 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in test_juseless.py
e767dc9850
2022-09-02 11:55:53 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in configs/juseless.py
4261ec5205
2022-09-02 11:55:53 +02:00

2022-09-01

Synchon Mandal
refactor: update docstrings for datagrabber/multiple_base.py
ebb546883c
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: rename datagrabber/meta.py to datagrabber/multiple_base.py
55ace6363a
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: improve imports for datagrabber sub-package
f53e48e74b
2022-09-01 17:01:21 +02:00
Synchon Mandal
chore: remove old aggregated unit tests for datagrabber sub-package
3804bb736b
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move PatternDataladDataGrabber to separate module
dc1af36579
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move DataladDataGrabber to separate module
d27f64e914
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move PatternDataGrabber unit tests to separate module
2abdaaa61e
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: docstrings, type annotations, move unit tests for BaseDataGrabber to separate module
672619c82a
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in datagrabber/meta.py
789b20fd8f
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in datagrabber/hcp.py
132c65d793
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move PatternDataladDataGrabber to separate module
6aaa80862d
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move DataladDataGrabber to separate module
bb0630703a
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move PatternDataGrabber to separate module
7811060833
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: move utility functions from datagrabber/base.py to separate module
ae189e4973
2022-09-01 17:01:21 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in datagrabber/base.py
9a46ee2ca2
2022-09-01 17:01:21 +02:00

2022-08-31

Synchon Mandal
refactor: add docstring for datareader package import module
19114ca6c9
2022-08-31 14:50:19 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in test_default_reader.py
8fa1ada407
2022-08-31 14:50:19 +02:00
Synchon Mandal
refactor: add docstrings and type annotations for datareader/default.py
e0a138a66d
2022-08-31 14:50:19 +02:00
Synchon Mandal
refactor: improve imports for preprocess sub-package
25313c8413
2022-08-31 11:29:45 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in test_confounds.py
97a6609d38
2022-08-31 11:29:45 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in preprocess/confounds.py
518fd3e338
2022-08-31 11:29:45 +02:00

2022-08-30

Synchon Mandal
refactor: improve imports for markers sub-package
78105e625d
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in test_parcel.py
c3bc3c2bb2
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in test_collection.py
6ffb523495
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: create new module for PipelineStepMixin unit tests
abfb2774b7
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: rename, prune, add docstrings and type annotations in test_base.py
05dceab481
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in markers/parcel.py
ed65194bd7
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: add docstrings and type annotations for markers/collection.py
1518eb9b04
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: add new module for PipelineStepMixin
30c409610b
2022-08-30 19:54:08 +02:00
Synchon Mandal
refactor: prune, add docstrings and type annotations in markers/base.py
17f3db451c
2022-08-30 19:54:08 +02:00
Synchon Mandal
fix: correct import in base.py
5df610e4fe
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in test_sqlite.py
35a9afb131
2022-08-30 18:36:21 +02:00
Synchon Mandal
fix: correct spelling in sqlite.py
682c4dd115
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: prune test_base.py and add type annotations
9b24684541
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: separate module for unit tests of storage/utils.py
a901f44acd
2022-08-30 18:36:21 +02:00
Synchon Mandal
fix: correct default value for rows_col_name in element_to_index()
d65c8ff396
2022-08-30 18:36:21 +02:00
Synchon Mandal
fix: correct key usage in process_meta()
575039e6d5
2022-08-30 18:36:21 +02:00
Synchon Mandal
fix: update __init__ for PandasBaseFeatureStorage
a969d79c45
2022-08-30 18:36:21 +02:00
Synchon Mandal
update: improve storage sub-package import
17ba60cd54
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: prune sqlite.py and add docstring and type annotations
6addbf232d
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: move storage utility functions to separate module and add docstrings and type annotations
b32d02fd0f
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: move PandasBaseFeatureStorage to separate module and add docstrings and type annotations
338077e72f
2022-08-30 18:36:21 +02:00
Synchon Mandal
refactor: prune base.py and add docstrings and type annotations
0681dc7476
2022-08-30 18:36:21 +02:00
Synchon Mandal
chore: flake8 fix for logging.py
a4a1e66a09
2022-08-30 14:06:42 +02:00
Synchon Mandal
update: use context manager for pytest caplog in test_logging.py
34113d2ef2
2022-08-30 14:06:42 +02:00
Synchon Mandal
refactor: add separate module for unit tests of utils/fs.py
165b8a19a7
2022-08-30 14:06:42 +02:00
Synchon Mandal
refactor: prune test_logging.py and add docstrings and type annotations
a65b3ef92b
2022-08-30 14:06:42 +02:00
Synchon Mandal
refactor: prune import for utils sub-package
d5d81aa305
2022-08-30 14:06:42 +02:00
Synchon Mandal
refactor: add docstrings and type annotations in utils/logging.py
0a619705d7
2022-08-30 14:06:42 +02:00
Synchon Mandal
refactor: add docstrings and type annotations to utils/fs.py
5d9c39d3dc
2022-08-30 14:06:42 +02:00

2022-07-27

Synchon Mandal
fix: refactor get_elements docstring in datagrabber.base to build docs
c868f151e4
2022-07-27 14:13:23 +02:00
Synchon Mandal
fix: remove unnecessary sources for flake8 check
cc9a9f2b9a
2022-07-27 12:36:58 +02:00
Synchon Mandal
fix: flake8 fix for markers.tests.test_collection
25f78c90b8
2022-07-27 12:35:45 +02:00
Synchon Mandal
fix: flake8 fix for markers.tests.test_parcel
ebaac4c953
2022-07-27 12:35:32 +02:00
Synchon Mandal
fix: flake8 fix for markers.tests.test_base_marker
037b8f4b87
2022-07-27 12:33:41 +02:00
Synchon Mandal
fix: flake8 fix for markers.parcel
85c9bd0d02
2022-07-27 12:33:30 +02:00
Synchon Mandal
fix: flake8 fix for markers.collection
9f98d866d0
2022-07-27 12:33:14 +02:00
Synchon Mandal
fix: flake8 fix for markers.base
c5100272ae
2022-07-27 12:33:06 +02:00
Synchon Mandal
fix: flake8 fix for datareader.tests.test_default_reader
013cbefb57
2022-07-27 12:25:46 +02:00
Synchon Mandal
fix: flake8 fix for datareader.default
e5dfa942b4
2022-07-27 12:25:33 +02:00
Synchon Mandal
fix: flake8 fix for preprocess.tests.test_confounds
8e6f7aaf6d
2022-07-27 12:22:58 +02:00
Synchon Mandal
fix: flake8 fix for preprocess.confounds
57ff4aec5a
2022-07-27 12:22:47 +02:00
Synchon Mandal
fix: flake8 fix for tests.test_main
bfc89ea5d0
2022-07-27 12:06:12 +02:00
Synchon Mandal
fix: flake8 fix for datagrabber.tests.test_base_datagrabber
438809753a
2022-07-27 12:04:43 +02:00
Synchon Mandal
fix: flake8 fix for datagrabber.meta
b101686a0d
2022-07-27 12:04:31 +02:00
Synchon Mandal
fix: flake8 fix for datagrabber.hcp
04e42ba50d
2022-07-27 12:04:14 +02:00
Synchon Mandal
fix: flake8 fix for datagrabber.base
2fe9d7f37f
2022-07-27 12:04:01 +02:00
Synchon Mandal
fix: flake8 fix for utils.tests.test_logging
8dc19912c7
2022-07-27 12:03:41 +02:00
Synchon Mandal
fix: flake8 fix for utils.logging
2eae5edddb
2022-07-27 12:03:31 +02:00
Synchon Mandal
fix: flake fix for utils.fs
99705b8a9b
2022-07-27 12:03:19 +02:00

2022-07-26

Synchon Mandal
fix: flake8 fix for storage.base
fc00455c94
2022-07-26 16:54:23 +02:00
Synchon Mandal
fix: flake8 fix for storage.sqlite
06d27ca735
2022-07-26 16:53:33 +02:00
Synchon Mandal
fix: flake8 fix for storage.tests.test_base
1055cb043f
2022-07-26 16:53:19 +02:00
Synchon Mandal
fix: flake8 fix for storage.tests.test_sqlite
a8fa3d60db
2022-07-26 16:52:59 +02:00
Synchon Mandal
fix: flake8 fix for configs.tests.test_juseless
52db045e4b
2022-07-26 16:35:03 +02:00
Synchon Mandal
fix: flake8 fix for configs.juseless
d36b4b553b
2022-07-26 16:34:47 +02:00
Synchon Mandal
fix: flake8 fix for testing.registry
ff85027ecd
2022-07-26 16:31:30 +02:00
Synchon Mandal
fix: flake8 fix for testing.datagrabbers
b0edc91987
2022-07-26 16:30:22 +02:00
Synchon Mandal
fix: flake8 fix for stats
f4f8ad7134
2022-07-26 16:27:14 +02:00
Synchon Mandal
fix: flake8 fix for data.tests.test_atlas
fb6854f118
2022-07-26 16:24:32 +02:00
Synchon Mandal
fix: flake8 fix for data.atlases
65eb01a671
2022-07-26 16:24:16 +02:00
Synchon Mandal
fix: flake8 fix for api.tests.test_registry
a680d0c9c2
2022-07-26 16:24:00 +02:00
Synchon Mandal
fix: flake8 fix for api.tests.test_parser
a14c08dd53
2022-07-26 16:23:41 +02:00
Synchon Mandal
fix: flake8 fix for api.tests.test_functions
203c063192
2022-07-26 16:23:29 +02:00
Synchon Mandal
fix: flake8 fix for api.tests.test_cli
fbd53a6c36
2022-07-26 16:23:12 +02:00
Synchon Mandal
fix: flake8 fix for api.registry
b3baa83f3d
2022-07-26 16:22:58 +02:00
Synchon Mandal
fix: flake8 fix for api.parser
c3ccc3d0d7
2022-07-26 16:22:48 +02:00
Synchon Mandal
fix: flake8 fix for api.functions
e05f705b47
2022-07-26 16:22:37 +02:00
Synchon Mandal
fix: flake8 fix for api.decorators
f9198dcac6
2022-07-26 16:22:25 +02:00
Synchon Mandal
fix: flake8 fix for api.cli
6688e155b1
2022-07-26 16:22:08 +02:00
Synchon Mandal
fix: make codespell work
485ce67882
2022-07-26 15:05:04 +02:00
Synchon Mandal
chore: omit _version.py from coverage measurement and reporting
069f0eb005
2022-07-26 14:53:59 +02:00
Synchon Mandal
chore: fix codecov-action to v3 in ci.yml
4bbf4544b6
2022-07-26 14:53:14 +02:00
Synchon Mandal
fix: revert ci.yml to Ubuntu to pass tests
d2f3af33fc
2022-07-26 14:52:35 +02:00
Synchon Mandal
update: add support for macOS and Windows testing in ci.yml
0e2f69c8ce
2022-07-26 14:18:07 +02:00
Synchon Mandal
update: add lint workflow for gh-actions
89a52fb6d2
2022-07-26 13:59:05 +02:00
Synchon Mandal
update: remove py39 for Python 3.9 tox env in gh-actions
0fd08c6d52
2022-07-26 11:53:40 +02:00
Fede
Fix tox coverage path
a5c0e89883
2022-07-26 11:27:34 +03:00

2022-07-25

Synchon Mandal
update: increase verbosity for pytest in tox.ini
1067272c4d
2022-07-25 18:42:15 +02:00
Synchon Mandal
fix: update config for coverage:run in tox.ini
3e9256715e
2022-07-25 18:41:21 +02:00
Synchon Mandal
fix: move git config generation to ci.yml and add passenv in tox pytest tests
64c19f0363
2022-07-25 17:31:29 +02:00
Synchon Mandal
fix: remove git config generation from ci.yml
73bf601ff8
2022-07-25 17:08:15 +02:00
Synchon Mandal
fix: generate .gitconfig for tox pytest tests to make git-annex work
8bd6e33656
2022-07-25 17:07:14 +02:00
Synchon Mandal
fix: move git config listing to ci.yml
20cdfc6dfe
2022-07-25 15:11:27 +02:00
Synchon Mandal
update: add git config listing in tox.ini
90b88d68a1
2022-07-25 14:49:28 +02:00
Synchon Mandal
fix: improve ci.yml
1f79edf45b
2022-07-25 14:37:11 +02:00
Synchon Mandal
fix: reorder checkout action in ci.yml
0461d9d016
2022-07-25 14:18:40 +02:00
Synchon Mandal
fix: update ci.yml to make git config work properly
20cb20712d
2022-07-25 13:56:15 +02:00
Synchon Mandal
chore: update contributors list
7fcd09a0cb
2022-07-25 13:55:11 +02:00
Synchon Mandal
fix: use absolute path for setting git config in ci.yml
be707ad183
2022-07-25 11:53:52 +02:00
Synchon Mandal
update: add pytest for python envs in tox.ini
d7616e9c9d
2022-07-25 11:30:19 +02:00

2022-07-22

Synchon Mandal
update: add coverage to 3.9 for gh-actions in tox.ini
ba4336c924
2022-07-22 16:03:23 +02:00
Synchon Mandal
update: drop Python 3.7 support
196dcd7947
2022-07-22 15:08:10 +02:00
Synchon Mandal
chore: remove docs-requirements.txt
789b9376bd
2022-07-22 15:05:30 +02:00
Synchon Mandal
update: add docs requirements in pyproject.toml
f113c6772b
2022-07-22 15:04:54 +02:00
Synchon Mandal
update: fix docs.yml to work with gh-actions
70e3568282
2022-07-22 13:19:18 +02:00
Synchon Mandal
update: fix ci.yml to work with gh-actions
2fe1a9afe7
2022-07-22 12:57:36 +02:00
Fede
Fix examples + doc
6b541fd3cd
2022-07-22 12:42:02 +03:00
Fede
Doc in data
932d5da2a1
2022-07-22 12:27:22 +03:00
Fede
Fix tests
53ce28a82d
2022-07-22 12:01:25 +03:00

2022-07-21

Synchon Mandal
update: add support for python envs in tox
a4e0eeb7bf
2022-07-21 16:37:18 +02:00
Synchon Mandal
fix: add missing guard block for setup.py
6436d3818a
2022-07-21 14:34:15 +02:00
Synchon Mandal
chore: remove requirements.txt
18bbff7d28
2022-07-21 14:31:11 +02:00
Synchon Mandal
update: add metadata and improve code style for pyproject.toml
90dcb8aa4f
2022-07-21 14:30:31 +02:00
Synchon Mandal
update: remove metadata and improve code style for setup.py
95046b1806
2022-07-21 14:29:07 +02:00
Synchon Mandal
chore: remove test-requirements.txt
a56f8bdb7d
2022-07-21 13:22:46 +02:00
Synchon Mandal
chore: remove dev-requirements.txt
8c09f0f268
2022-07-21 13:22:29 +02:00

2022-07-20

Synchon Mandal
chore: remove unnecessary tool config files and makefile
b575783493
2022-07-20 19:02:17 +02:00
Synchon Mandal
update: add support for codespell in tox
5e79651dea
2022-07-20 19:00:14 +02:00
Synchon Mandal
update: add coverage support in tox
85ec07fae4
2022-07-20 18:44:48 +02:00
Synchon Mandal
update: add pytest support in tox
d570f480c1
2022-07-20 18:12:13 +02:00
Synchon Mandal
update: add initial tox support for flake8
ad8d44fe5f
2022-07-20 16:44:13 +02:00

2022-04-15

LeSasse
tricky typo
3cd0b7bbff
2022-04-15 13:59:49 +02:00
LeSasse
adding code to compute squares if needed for _pick_confounds
3faa45e961
2022-04-15 13:49:39 +02:00
Fede Raimondo
Update requirements + debug + various fixes
88692ca71f
2022-04-15 11:42:29 +02:00
Fede Raimondo
Add support for fALFF, GCOR and LCOR in ParcelAggregation
a6f927bfbe
2022-04-15 09:49:54 +02:00
Fede Raimondo
Merge pull request #5 from verakye/tian 
Add retrieval of Tian atlases
17064b35e3
2022-04-15 07:56:23 +02:00

2022-04-13

Fede Raimondo
flake again
dd0f8192d9
2022-04-13 12:19:50 +02:00
Fede Raimondo
Flake
dad7ce69fd
2022-04-13 12:19:19 +02:00
Fede Raimondo
JuselessUKBVBM data grabber tested
fc7cab2a30
2022-04-13 12:17:56 +02:00
Fede Raimondo
Better juseless test
9bc310af4c
2022-04-13 13:06:25 +03:00
Fede Raimondo
Updated pattern datagrabber
ffa75f0aba
2022-04-13 13:03:45 +03:00

2022-03-29

LeSasse
improved __getitem__()
7026ba7192
2022-03-29 16:38:11 +02:00
LeSasse
updated HCP1200 pattern and __getitem__() method and added test for juseless
f3c1bd1e3e
2022-03-29 16:25:05 +02:00
Fede Raimondo
flake
7106f3d02c
2022-03-29 13:18:25 +02:00
Fede Raimondo
Fix pattern data grabber: add option to use '*'
ce73351bb8
2022-03-29 13:17:44 +02:00
Fede Raimondo
HCP Datagrabber WIP
7622c2c678
2022-03-29 12:08:38 +02:00
LeSasse
moved HCP1200 datagrabber to configs/juseless, because confound files are so far only available on juseless. Updated meta dictionary for JuselessUKBVBM and HCP1200 and updated constructor for HCP1200
43b290ee86
2022-03-29 09:16:25 +02:00

2022-03-25

Fede Raimondo
One more YAML example + typos + llinter
6977b0b780
2022-03-25 14:32:42 +01:00
Fede Raimondo
Fixed test, ready for demo in Software meeting
5746d9ed50
2022-03-25 12:08:58 +01:00
Fede Raimondo
Merge branch 'dev' of github.com:juaml/junifer into dev
314a2b42c4
2022-03-25 12:04:29 +01:00
Fede Raimondo
Add one more TODO
98e26780b6
2022-03-25 12:04:26 +01:00
Fede Raimondo
Fix example + Fix bug with testing datagrabber not using proper met
abaa5d2917
2022-03-25 12:03:55 +01:00
Fede Raimondo
Remove files not belonging
2239256e51
2022-03-25 10:37:43 +01:00
Fede Raimondo
Fixes for CI + test in juseless
62a8e3423f
2022-03-25 10:36:35 +01:00
Fede Raimondo
Ready to test HTCondor
8f411c2cc3
2022-03-25 09:33:04 +01:00

2022-03-24

Fede Raimondo
damn flake
d79fbf0aed
2022-03-24 16:24:06 +01:00
Fede Raimondo
Prototype of junifer queue
02bd4a556e
2022-03-24 16:23:25 +01:00
Fede Raimondo
Renamed run, so delete this file
585dd0fd76
2022-03-24 14:56:10 +01:00
Fede Raimondo
Test cli
4b6c0d93f2
2022-03-24 14:44:23 +01:00
Fede Raimondo
Fix parsing test
db43d37994
2022-03-24 12:56:37 +01:00

2022-03-23

Fede Raimondo
Test run and collect
5928bc910b
2022-03-23 14:58:09 +01:00
Fede Raimondo
More tests
bdf4c764a1
2022-03-23 14:18:04 +01:00
Fede Raimondo
getting tired of testing sqlite
56382b543b
2022-03-23 12:44:29 +01:00
Fede Raimondo
typo
a39cff7d1c
2022-03-23 12:24:04 +01:00
Fede Raimondo
Test collect
5e1dfdbff4
2022-03-23 12:19:15 +01:00
Fede Raimondo
Update reqs + use sqlite_master
dd0077f751
2022-03-23 12:02:34 +01:00
Fede Raimondo
Flake
4e1d118dd6
2022-03-23 11:48:57 +01:00
Fede Raimondo
CLI RUN + COLLECT: missing tests on collect
b49c701588
2022-03-23 10:50:29 +01:00

2022-03-15

Fede Raimondo
flake
33b94da4b1
2022-03-15 15:49:36 +01:00
Fede Raimondo
The new example "runs", still don't know if it works
aa855d99f4
2022-03-15 15:49:22 +01:00
Fede Raimondo
Multiple output tested
8c3302b54d
2022-03-15 15:34:00 +01:00
Fede Raimondo
SQLITE Element based storage by default
69bff67b1d
2022-03-15 11:59:48 +01:00
Fede Raimondo
Test store and read_df
d3a1dca14a
2022-03-15 08:26:42 +01:00
Fede Raimondo
WIP
8d5254e4f4
2022-03-15 08:10:19 +01:00

2022-03-14

Fede Raimondo
Fix one more test
c37372ff93
2022-03-14 16:12:33 +01:00
Fede Raimondo
More tests!!
4ab08e08a0
2022-03-14 15:37:38 +01:00
Fede Raimondo
typo
c1fd143e0d
2022-03-14 15:27:51 +01:00
Fede Raimondo
More test!
06466b717e
2022-03-14 15:25:12 +01:00
Fede Raimondo
flake!
188a8a87a2
2022-03-14 12:53:44 +01:00
Fede Raimondo
Mores tests
49a1c3b019
2022-03-14 12:49:31 +01:00

2022-03-11

Fede Raimondo
Run all tests if one python version fails
a2755be299
2022-03-11 11:32:03 +01:00
Fede Raimondo
Fix
733818d465
2022-03-11 11:28:23 +01:00
Fede Raimondo
add one more python version + rename
385da81eb4
2022-03-11 11:26:47 +01:00
Fede Raimondo
Fix test
e030b01493
2022-03-11 11:08:45 +01:00
Fede Raimondo
Fix Parcel test
60cdcf6961
2022-03-11 10:51:53 +01:00