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Code Issues 14 Pull requests 2 Packages Activity Actions

[BUG]: Fix interpolation scheme for native parcellation and mask #276

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synchon merged 3 commits from fix/interp-parcel-mask into main 2023-11-17 15:05:50 +00:00
Conversation 3 Commits 3 Files changed 3 +3 -2
3 changed files with 3 additions and 2 deletions
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1
docs/changes/newsfragments/276.bugfix Normal file
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@ -0,0 +1 @@
Change interpolation scheme for parcel and mask native space transformation to nearest neighbour by `Synchon Mandal`_

2
junifer/data/masks.py
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@ -361,7 +361,7 @@ def get_mask( # noqa: C901
# Set applywarp command # Set applywarp command
applywarp_cmd = [ applywarp_cmd = [
"applywarp", "applywarp",
"--interp=spline", "--interp=nn",
f"-i {prewarp_mask_path.resolve()}", f"-i {prewarp_mask_path.resolve()}",
# use resampled reference # use resampled reference
f"-r {target_data['reference_path'].resolve()}", f"-r {target_data['reference_path'].resolve()}",

2
junifer/data/parcellations.py
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@ -308,7 +308,7 @@ def get_parcellation(
# Set applywarp command # Set applywarp command
applywarp_cmd = [ applywarp_cmd = [
"applywarp", "applywarp",
"--interp=spline", "--interp=nn",
f"-i {prewarp_parcellation_path.resolve()}", f"-i {prewarp_parcellation_path.resolve()}",
# use resampled reference # use resampled reference
f"-r {target_data['reference_path'].resolve()}", f"-r {target_data['reference_path'].resolve()}",