From b702a985b044c90ba50e809ca9eabd6fa0645723 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Fri, 17 Nov 2023 14:20:17 +0100 Subject: [PATCH 1/3] fix: change interpolation for native space parcellation to nearest neighbour --- junifer/data/parcellations.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/junifer/data/parcellations.py b/junifer/data/parcellations.py index d34ac08a9..3442efd37 100644 --- a/junifer/data/parcellations.py +++ b/junifer/data/parcellations.py @@ -308,7 +308,7 @@ def get_parcellation( # Set applywarp command applywarp_cmd = [ "applywarp", - "--interp=spline", + "--interp=nn", f"-i {prewarp_parcellation_path.resolve()}", # use resampled reference f"-r {target_data['reference_path'].resolve()}", -- 2.52.0 From e121be150915227233aae2fb2a36551c0af3632f Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Fri, 17 Nov 2023 14:20:55 +0100 Subject: [PATCH 2/3] fix: change interpolation for native space mask to nearest neighbour --- junifer/data/masks.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/junifer/data/masks.py b/junifer/data/masks.py index b96e18b04..62096bd57 100644 --- a/junifer/data/masks.py +++ b/junifer/data/masks.py @@ -361,7 +361,7 @@ def get_mask( # noqa: C901 # Set applywarp command applywarp_cmd = [ "applywarp", - "--interp=spline", + "--interp=nn", f"-i {prewarp_mask_path.resolve()}", # use resampled reference f"-r {target_data['reference_path'].resolve()}", -- 2.52.0 From 422f72cbdffa8742407f78b645ec9d41ddef8894 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Fri, 17 Nov 2023 14:28:06 +0100 Subject: [PATCH 3/3] chore: add changelog 276.bugfix --- docs/changes/newsfragments/276.bugfix | 1 + 1 file changed, 1 insertion(+) create mode 100644 docs/changes/newsfragments/276.bugfix diff --git a/docs/changes/newsfragments/276.bugfix b/docs/changes/newsfragments/276.bugfix new file mode 100644 index 000000000..54bc1a62c --- /dev/null +++ b/docs/changes/newsfragments/276.bugfix @@ -0,0 +1 @@ +Change interpolation scheme for parcel and mask native space transformation to nearest neighbour by `Synchon Mandal`_ -- 2.52.0