Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
25 lines
1 KiB
(Stored with Git Annex)
CSV
25 lines
1 KiB
(Stored with Git Annex)
CSV
ROIid;ROIabbr;ROIname
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2;lAnteroventral;left anteroventral
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4;lVentral_Anterior;left ventral anterior
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5;lVentral_Lateral_Anterior;left ventral lateral anterior
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6;lVentral_Lateral_Posterior;left ventral lateral posterior
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7;lVentral_Posterolateral;left ventral posterolateral
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8;lPulvinar;left pulvinar
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9;lLateral_Geniculate;left lateral geniculate
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10;lMedial_Geniculate;left medial geniculate
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11;lCentromedian;left centromedian
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12;lMediodorsal;left mediodorsal
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13;lHabenula;left habenula
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14;lMTT;left mammillothalamic tract
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16;rAnteroventral;right anteroventral
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18;rVentral_Anterior;right ventral anterior
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19;rVentral_Lateral_Anterior;right ventral lateral anterior
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20;rVentral_Lateral_Posterior;right ventral lateral posterior
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21;rVentral_Posterolateral;right ventral posterolateral
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22;rPulvinar;right pulvinar
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23;rLateral_Geniculate;right lateral geniculate
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24;rMedial_Geniculate;right medial geniculate
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25;rCentromedian;right centromedian
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26;rMediodorsal;right mediodorsal
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27;rHabenula;right habenula
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28;rMTT;right mammillothalamic tract
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