Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
1 KiB
(Stored with Git Annex)
1 KiB
(Stored with Git Annex)
| 1 | ROIid | ROIabbr | ROIname |
|---|---|---|---|
| 2 | 2 | lAnteroventral | left anteroventral |
| 3 | 4 | lVentral_Anterior | left ventral anterior |
| 4 | 5 | lVentral_Lateral_Anterior | left ventral lateral anterior |
| 5 | 6 | lVentral_Lateral_Posterior | left ventral lateral posterior |
| 6 | 7 | lVentral_Posterolateral | left ventral posterolateral |
| 7 | 8 | lPulvinar | left pulvinar |
| 8 | 9 | lLateral_Geniculate | left lateral geniculate |
| 9 | 10 | lMedial_Geniculate | left medial geniculate |
| 10 | 11 | lCentromedian | left centromedian |
| 11 | 12 | lMediodorsal | left mediodorsal |
| 12 | 13 | lHabenula | left habenula |
| 13 | 14 | lMTT | left mammillothalamic tract |
| 14 | 16 | rAnteroventral | right anteroventral |
| 15 | 18 | rVentral_Anterior | right ventral anterior |
| 16 | 19 | rVentral_Lateral_Anterior | right ventral lateral anterior |
| 17 | 20 | rVentral_Lateral_Posterior | right ventral lateral posterior |
| 18 | 21 | rVentral_Posterolateral | right ventral posterolateral |
| 19 | 22 | rPulvinar | right pulvinar |
| 20 | 23 | rLateral_Geniculate | right lateral geniculate |
| 21 | 24 | rMedial_Geniculate | right medial geniculate |
| 22 | 25 | rCentromedian | right centromedian |
| 23 | 26 | rMediodorsal | right mediodorsal |
| 24 | 27 | rHabenula | right habenula |
| 25 | 28 | rMTT | right mammillothalamic tract |