Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
249 lines
8.4 KiB
(Stored with Git Annex)
CSV
249 lines
8.4 KiB
(Stored with Git Annex)
CSV
ROIid;ROIabbr;ROIname
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1;lTE1.1;Left Area TE 1.1 (HESCHL)
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2;rTE1.1;Right Area TE 1.1 (HESCHL)
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3;l3b;Left Area 3b (PostCG)
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4;r3b;Right Area 3b (PostCG)
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5;lHC-Presubiculum;Left HC-Presubiculum (Hippocampus)
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6;rHC-Presubiculum;Right HC-Presubiculum (Hippocampus)
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7;lhOc4la;Left Area hOc4la (LOC)
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8;rPF;Right Area PF (IPL)
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9;lPF;Left Area PF (IPL)
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10;rhOc4la;Right Area hOc4la (LOC)
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11;lhOc2;Left Area hOc2 (V2, 18)
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12;rhOc2;Right Area hOc2 (V2, 18)
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13;l6d2;Left Area 6d2 (PreCG)
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14;r6d2;Right Area 6d2 (PreCG)
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15;lIg3;Left Area Ig3 (Insula)
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16;rIg3;Right Area Ig3 (Insula)
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17;lhOc4d;Left Area hOc4d (Cuneus)
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18;rhOc4d;Right Area hOc4d (Cuneus)
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19;lFo4;Left Area Fo4 (OFC)
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20;rFo4;Right Area Fo4 (OFC)
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21;lOP4;Left Area OP4 (POperc)
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22;rOP4;Right Area OP4 (POperc)
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23;l1;Left Area 1 (PostCG)
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24;r1;Right Area 1 (PostCG)
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25;lCh4;Left Ch 4 (Basal Forebrain)
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26;rCh4;Right Ch 4 (Basal Forebrain)
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27;lFrontal-I;Left Frontal-I (GapMap)
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28;rFrontal-I;Right Frontal-I (GapMap)
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29;lhPO1;Left Area hPO1 (POS)
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30;rhPO1;Right Area hPO1 (POS)
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31;lDorsalDentateNucleus;Left Dorsal Dentate Nucleus (Cerebellum)
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32;rOP2;Right Area OP2 (POperc)
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33;lOP2;Left Area OP2 (POperc)
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34;rTE1.0;Right Area TE 1.0 (HESCHL)
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35;lTE1.0;Left Area TE 1.0 (HESCHL)
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36;rDorsalDentateNucleus;Right Dorsal Dentate Nucleus (Cerebellum)
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37;lSTS2;Left Area STS2 (STS)
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38;rSTS2;Right Area STS2 (STS)
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39;lId3;Left Area Id3 (Insula)
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40;rId3;Right Area Id3 (Insula)
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41;l6mp;Left Area 6mp (SMA, mesial SFG)
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42;r6mp;Right Area 6mp (SMA, mesial SFG)
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43;lDG;Left DG (Hippocampus)
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44;rDG;Right DG (Hippocampus)
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45;lPGp;Left Area PGp (IPL)
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46;rPGp;Right Area PGp (IPL)
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47;lIg1;Left Area Ig1 (Insula)
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48;rIg1;Right Area Ig1 (Insula)
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49;l6ma;Left Area 6ma (preSMA, mesial SFG)
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50;r6ma;Right Area 6ma (preSMA, mesial SFG)
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51;lTI;Left Area TI (STG)
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52;rTI;Right Area TI (STG)
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53;lPFt;Left Area PFt (IPL)
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54;rp24ab;Right Area p24ab (pACC)
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55;lp24ab;Left Area p24ab (pACC)
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56;rPFt;Right Area PFt (IPL)
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57;lp24c;Left Area p24c (pACC)
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58;rp24c;Right Area p24c (pACC)
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59;lhOc3v;Left Area hOc3v (LingG)
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60;rhOc3v;Right Area hOc3v (LingG)
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61;lTE3;Left Area TE 3 (STG)
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62;rTE3;Right Area TE 3 (STG)
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63;lFrontal-to-Occipital;Left Frontal-to-Occipital (GapMap)
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64;rPFcm;Right Area PFcm (IPL)
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65;lPFcm;Left Area PFcm (IPL)
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66;rFrontal-to-Occipital;Right Frontal-to-Occipital (GapMap)
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67;lhIP5;Left Area hIP5 (IPS)
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68;rhIP5;Right Area hIP5 (IPS)
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69;l7P;Left Area 7P (SPL)
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70;r7P;Right Area 7P (SPL)
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71;l6d1;Left Area 6d1 (PreCG)
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72;r6d1;Right Area 6d1 (PreCG)
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73;lFG1;Left Area FG1 (FusG)
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74;rFG1;Right Area FG1 (FusG)
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75;lhIP4;Left Area hIP4 (IPS)
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76;rhIP4;Right Area hIP4 (IPS)
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77;lOP6;Left Area OP6 (Frontal Operculum)
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78;rOP6;Right Area OP6 (Frontal Operculum)
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79;lFG2;Left Area FG2 (FusG)
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80;rFG2;Right Area FG2 (FusG)
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81;lhIP6;Left Area hIP6 (IPS)
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82;rhIP6;Right Area hIP6 (IPS)
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83;lhIP3;Left Area hIP3 (IPS)
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84;rhIP3;Right Area hIP3 (IPS)
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85;lFo5;Left Area Fo5 (OFC)
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86;rFo5;Right Area Fo5 (OFC)
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87;lCM;Left CM (Amygdala)
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88;rCM;Right CM (Amygdala)
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89;lOP7;Left Area OP7 (Frontal Operculum)
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90;rOP7;Right Area OP7 (Frontal Operculum)
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91;l4p;Left Area 4p (PreCG)
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92;r4p;Right Area 4p (PreCG)
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93;l33;Left Area 33 (ACC)
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94;r33;Right Area 33 (ACC)
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95;lhOc6;Left Area hOc6 (POS)
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96;rHC-Prosubiculum;Right HC-Prosubiculum (Hippocampus)
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97;lHC-Prosubiculum;Left HC-Prosubiculum (Hippocampus)
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98;rhOc6;Right Area hOc6 (POS)
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99;lIg2;Left Area Ig2 (Insula)
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100;rIg2;Right Area Ig2 (Insula)
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101;lCA2;Left CA2 (Hippocampus)
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102;rCA2;Right CA2 (Hippocampus)
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103;lFp2;Left Area Fp2 (FPole)
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104;rFp2;Right Area Fp2 (FPole)
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105;lEntorhinalCortex;Left Entorhinal Cortex
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106;rEntorhinalCortex;Right Entorhinal Cortex
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107;lId4;Left Area Id4 (Insula)
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108;rId2;Right Area Id2 (Insula)
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109;lId2;Left Area Id2 (Insula)
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110;rId4;Right Area Id4 (Insula)
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111;lCA1;Left CA1 (Hippocampus)
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112;rOP1;Right Area OP1 (POperc)
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113;lOP1;Left Area OP1 (POperc)
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114;rCA1;Right CA1 (Hippocampus)
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115;lId6;Left Area Id6 (Insula)
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116;rId6;Right Area Id6 (Insula)
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117;lhIP8;Left Area hIP8 (IPS)
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118;rHC-Parasubiculum;Right HC-Parasubiculum (Hippocampus)
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119;lHC-Parasubiculum;Left HC-Parasubiculum (Hippocampus)
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120;rhIP8;Right Area hIP8 (IPS)
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121;lIF;Left IF (Amygdala)
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122;rIF;Right IF (Amygdala)
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123;lOP9;Left Area OP9 (Frontal Operculum)
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124;rOP9;Right Area OP9 (Frontal Operculum)
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125;lHC-Subiculum;Left HC-Subiculum (Hippocampus)
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126;rHC-Subiculum;Right HC-Subiculum (Hippocampus)
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127;lTemporal-to-Parietal;Left Temporal-to-Parietal (GapMap)
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128;rTemporal-to-Parietal;Right Temporal-to-Parietal (GapMap)
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129;l6d3;Left Area 6d3 (SFS)
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130;rVentralDentateNucleus;Right Ventral Dentate Nucleus (Cerebellum)
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131;lVentralDentateNucleus;Left Ventral Dentate Nucleus (Cerebellum)
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132;r6d3;Right Area 6d3 (SFS)
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133;lHATA;Left HATA (Hippocampus)
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134;rHATA;Right HATA (Hippocampus)
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135;lhIP2;Left Area hIP2 (IPS)
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136;rhIP2;Right Area hIP2 (IPS)
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137;l44;Left Area 44 (IFG)
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138;r44;Right Area 44 (IFG)
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139;lFo7;Left Area Fo7 (OFC)
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140;rFo7;Right Area Fo7 (OFC)
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141;l45;Left Area 45 (IFG)
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142;r45;Right Area 45 (IFG)
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143;lId1;Left Area Id1 (Insula)
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144;rId1;Right Area Id1 (Insula)
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145;l5Ci;Left Area 5Ci (SPL)
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146;r5Ci;Right Area 5Ci (SPL)
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147;lId5;Left Area Id5 (Insula)
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148;rTE1.2;Right Area TE 1.2 (HESCHL)
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149;lTE1.2;Left Area TE 1.2 (HESCHL)
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150;rId5;Right Area Id5 (Insula)
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151;lPGa;Left Area PGa (IPL)
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152;rPGa;Right Area PGa (IPL)
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153;lhIP1;Left Area hIP1 (IPS)
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154;rhIP1;Right Area hIP1 (IPS)
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155;l2;Left Area 2 (PostCS)
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156;r2;Right Area 2 (PostCS)
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157;lCh123;Left Ch 123 (Basal Forebrain)
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158;rCh123;Right Ch 123 (Basal Forebrain)
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159;lTE2.1;Left Area TE 2.1 (STG)
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160;rTE2.1;Right Area TE 2.1 (STG)
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161;lIa;Left Area Ia (Insula)
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162;rIa;Right Area Ia (Insula)
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163;lhOc3d;Left Area hOc3d (Cuneus)
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164;rhOc3d;Right Area hOc3d (Cuneus)
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165;lVTM;Left VTM (Amygdala)
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166;rVTM;Right VTM (Amygdala)
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167;lOP3;Left Area OP3 (POperc)
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168;rOP3;Right Area OP3 (POperc)
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169;l7A;Left Area 7A (SPL)
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170;r7A;Right Area 7A (SPL)
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171;lOP8;Left Area OP8 (Frontal Operculum)
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172;rOP8;Right Area OP8 (Frontal Operculum)
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173;lHC-Transsubiculum;Left HC-Transsubiculum (Hippocampus)
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174;rHC-Transsubiculum;Right HC-Transsubiculum (Hippocampus)
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175;l25;Left Area 25 (sACC)
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176;r7M;Right Area 7M (SPL)
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177;l7M;Left Area 7M (SPL)
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178;r25;Right Area 25 (sACC)
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179;lOP5;Left Area OP5 (Frontal Operculum)
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180;rOP5;Right Area OP5 (Frontal Operculum)
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181;lCA3;Left CA3 (Hippocampus)
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182;rPFm;Right Area PFm (IPL)
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183;lPFm;Left Area PFm (IPL)
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184;rCA3;Right CA3 (Hippocampus)
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185;lFrontal-II;Left Frontal-II (GapMap)
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186;rFrontal-II;Right Frontal-II (GapMap)
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187;lLB;Left LB (Amygdala)
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188;rLB;Right LB (Amygdala)
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189;l4a;Left Area 4a (PreCG)
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190;rSTS1;Right Area STS1 (STS)
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191;lSTS1;Left Area STS1 (STS)
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192;r4a;Right Area 4a (PreCG)
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193;l5L;Left Area 5L (SPL)
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194;r5L;Right Area 5L (SPL)
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195;l5M;Left Area 5M (SPL)
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196;r5M;Right Area 5M (SPL)
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197;lFrontal-to-Temporal;Left Frontal-to-Temporal (GapMap)
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198;rFG3;Right Area FG3 (FusG)
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199;lFG3;Left Area FG3 (FusG)
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200;rFrontal-to-Temporal;Right Frontal-to-Temporal (GapMap)
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201;lFp1;Left Area Fp1 (FPole)
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202;rFp1;Right Area Fp1 (FPole)
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203;lFastigialNucleus;Left Fastigial Nucleus (Cerebellum)
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204;rFastigialNucleus;Right Fastigial Nucleus (Cerebellum)
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205;ls32;Left Area s32 (sACC)
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206;rs32;Right Area s32 (sACC)
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207;lMF;Left MF (Amygdala)
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208;rMF;Right MF (Amygdala)
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209;l3a;Left Area 3a (PostCG)
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210;r3a;Right Area 3a (PostCG)
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211;lhOc5;Left Area hOc5 (LOC)
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212;rId7;Right Area Id7 (Insula)
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213;lId7;Left Area Id7 (Insula)
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214;rhOc5;Right Area hOc5 (LOC)
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215;lFG4;Left Area FG4 (FusG)
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216;rFG4;Right Area FG4 (FusG)
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217;lInterposedNucleus;Left Interposed Nucleus (Cerebellum)
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218;rInterposedNucleus;Right Interposed Nucleus (Cerebellum)
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219;lFo1;Left Area Fo1 (OFC)
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220;rSF;Right SF (Amygdala)
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221;lSF;Left SF (Amygdala)
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222;rFo1;Right Area Fo1 (OFC)
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223;ls24;Left Area s24 (sACC)
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224;rs24;Right Area s24 (sACC)
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225;lFo6;Left Area Fo6 (OFC)
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226;rFo6;Right Area Fo6 (OFC)
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227;lhOc4v;Left Area hOc4v (LingG)
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228;rPFop;Right Area PFop (IPL)
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229;lPFop;Left Area PFop (IPL)
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230;rhOc4v;Right Area hOc4v (LingG)
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231;lp32;Left Area p32 (pACC)
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232;rp32;Right Area p32 (pACC)
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233;lhOc1;Left Area hOc1 (V1, 17, CalcS)
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234;rhOc1;Right Area hOc1 (V1, 17, CalcS)
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235;lFo2;Left Area Fo2 (OFC)
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236;rFo2;Right Area Fo2 (OFC)
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237;lhIP7;Left Area hIP7 (IPS)
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238;rhIP7;Right Area hIP7 (IPS)
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239;lTE2.2;Left Area TE 2.2 (STG)
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240;rTE2.2;Right Area TE 2.2 (STG)
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241;l7PC;Left Area 7PC (SPL)
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242;r7PC;Right Area 7PC (SPL)
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243;lhOc4lp;Left Area hOc4lp (LOC)
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244;rhOc4lp;Right Area hOc4lp (LOC)
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245;lTeI;Left Area TeI (STG)
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246;rFo3;Right Area Fo3 (OFC)
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247;lFo3;Left Area Fo3 (OFC)
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248;rTeI;Right Area TeI (STG)
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