Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
1.2 KiB
(Stored with Git Annex)
1.2 KiB
(Stored with Git Annex)
| 1 | ROIid | ROIabbr | ROIname | Vgm | Vwm | Vcsf |
|---|---|---|---|---|---|---|
| 2 | 2 | lCbrWM | Left Cerebral White Matter | 0 | 1 | 0 |
| 3 | 3 | lCbrGM | Left Cerebral Cortex | 1 | 0 | 0 |
| 4 | 4 | lLatVen | Left Lateral Ventricle | 0 | 0 | 1 |
| 5 | 5 | lInfLatVen | Left Inf Lat Vent | 0 | 0 | 1 |
| 6 | 7 | lCbeWM | Left Cerebellum White Matter | 0 | 1 | 0 |
| 7 | 8 | lCbeGM | Left Cerebellum Cortex | 1 | 0 | 0 |
| 8 | 10 | lThaPro | Left Thalamus Proper | 1 | 0 | 0 |
| 9 | 11 | lCau | Left Caudate | 1 | 0 | 0 |
| 10 | 12 | lPut | Left Putamen | 1 | 0 | 0 |
| 11 | 13 | lPal | Left Pallidum | 1 | 0 | 0 |
| 12 | 14 | b3thVen | Bothside 3rd Ventricle | 0 | 0 | 1 |
| 13 | 15 | b4thVen | Bothside 4th Ventricle | 0 | 0 | 1 |
| 14 | 16 | bBst | Bothside Brain Stem | 0 | 1 | 0 |
| 15 | 17 | lHip | Left Hippocampus | 1 | 0 | 0 |
| 16 | 18 | lAmy | Left Amygdala | 1 | 0 | 0 |
| 17 | 24 | bCSF | Bothside CSF | 0 | 0 | 1 |
| 18 | 26 | lAcc | Left Accumbens area | 1 | 0 | 0 |
| 19 | 28 | lVenDC | Left Ventral Diencephalon | 1 | 1 | 0 |
| 20 | 41 | rCbrWM | Right Cerebral White Matter | 0 | 1 | 0 |
| 21 | 42 | rCbrGM | Right Cerebral Cortex | 1 | 0 | 0 |
| 22 | 43 | rLatVen | Right Lateral Ventricle | 0 | 0 | 1 |
| 23 | 44 | rInfLatVen | Right Inf Lat Vent | 0 | 0 | 1 |
| 24 | 46 | rCbeWM | Right Cerebellum White Matter | 0 | 1 | 0 |
| 25 | 47 | rCbeGM | Right Cerebellum Cortex | 1 | 0 | 0 |
| 26 | 49 | rThaPro | Right Thalamus Proper | 1 | 0 | 0 |
| 27 | 50 | rCau | Right Caudate | 1 | 0 | 0 |
| 28 | 51 | rPut | Right Putamen | 1 | 0 | 0 |
| 29 | 52 | rPal | Right Pallidum | 1 | 0 | 0 |
| 30 | 53 | rHip | Right Hippocampus | 1 | 0 | 0 |
| 31 | 54 | rAmy | Right Amygdala | 1 | 0 | 0 |
| 32 | 58 | rAcc | Right Accumbens area | 1 | 0 | 0 |
| 33 | 60 | rVenDC | Right Ventral Diencephalon | 1 | 1 | 0 |