Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
4.3 KiB
(Stored with Git Annex)
4.3 KiB
(Stored with Git Annex)
| 1 | ROIid | ROIname | Vgm | Vwm | Vcsf | ROIcolor |
|---|---|---|---|---|---|---|
| 2 | 1 | TL hippocampus R | 1 | 0 | 0 | 0 204 0 |
| 3 | 2 | TL hippocampus L | 1 | 0 | 0 | 0 204 0 |
| 4 | 3 | TL amygdala R | 1 | 0 | 0 | 255 0 0 |
| 5 | 4 | TL amygdala L | 1 | 0 | 0 | 255 0 0 |
| 6 | 5 | TL anterior temporal lobe medial part R | 1 | 1 | 0 | 102 102 255 |
| 7 | 6 | TL anterior temporal lobe medial part L | 1 | 1 | 0 | 102 102 255 |
| 8 | 7 | TL anterior temporal lobe lateral part R | 1 | 1 | 0 | 255 177 100 |
| 9 | 8 | TL anterior temporal lobe lateral part L | 1 | 1 | 0 | 255 177 100 |
| 10 | 9 | TL parahippocampal and ambient gyrus R | 1 | 1 | 0 | 0 255 255 |
| 11 | 10 | TL parahippocampal and ambient gyrus L | 1 | 1 | 0 | 0 255 255 |
| 12 | 11 | TL superior temporal gyrus middle part R | 1 | 1 | 0 | 255 0 255 |
| 13 | 12 | TL superior temporal gyrus middle part L | 1 | 1 | 0 | 255 0 255 |
| 14 | 13 | TL middle and inferior temporal gyrus R | 1 | 1 | 0 | 102 0 0 |
| 15 | 14 | TL middle and inferior temporal gyrus L | 1 | 1 | 0 | 102 0 0 |
| 16 | 15 | TL fusiform gyrus R | 1 | 1 | 0 | 0 102 0 |
| 17 | 16 | TL fusiform gyrus L | 1 | 1 | 0 | 0 102 0 |
| 18 | 17 | cerebellum R | 1 | 1 | 0 | 255 215 0 |
| 19 | 18 | cerebellum L | 1 | 1 | 0 | 255 215 0 |
| 20 | 19 | brainstem excluding substantia nigra | 0 | 1 | 0 | 0 204 0 |
| 21 | 20 | insula posterior long gyrus L | 1 | 1 | 0 | 0 204 0 |
| 22 | 21 | insula posterior long gyrus R | 1 | 1 | 0 | 0 204 0 |
| 23 | 22 | OL lateral remainder occipital lobe L | 1 | 1 | 0 | 255 0 0 |
| 24 | 23 | OL lateral remainder occipital lobe R | 1 | 1 | 0 | 255 0 0 |
| 25 | 24 | CG anterior cingulate gyrus L | 1 | 1 | 0 | 102 102 255 |
| 26 | 25 | CG anterior cingulate gyrus R | 1 | 1 | 0 | 102 102 255 |
| 27 | 26 | CG posterior cingulate gyrus L | 1 | 1 | 0 | 255 177 100 |
| 28 | 27 | CG posterior cingulate gyrus R | 1 | 1 | 0 | 255 177 100 |
| 29 | 28 | FL middle frontal gyrus L | 1 | 1 | 0 | 0 255 255 |
| 30 | 29 | FL middle frontal gyrus R | 1 | 1 | 0 | 0 255 255 |
| 31 | 30 | TL posterior temporal lobe L | 1 | 1 | 0 | 255 0 255 |
| 32 | 31 | TL posterior temporal lobe R | 1 | 1 | 0 | 255 0 255 |
| 33 | 32 | PL angular gyrus L | 1 | 1 | 0 | 102 0 0 |
| 34 | 33 | PL angular gyrus R | 1 | 1 | 0 | 102 0 0 |
| 35 | 34 | caudate nucleus L | 1 | 0 | 0 | 0 102 0 |
| 36 | 35 | caudate nucleus R | 1 | 0 | 0 | 0 102 0 |
| 37 | 36 | nucleus accumbens L | 1 | 0 | 0 | 255 215 0 |
| 38 | 37 | nucleus accumbens R | 1 | 0 | 0 | 255 215 0 |
| 39 | 38 | putamen L | 1 | 0 | 0 | 0 204 0 |
| 40 | 39 | putamen R | 1 | 0 | 0 | 0 204 0 |
| 41 | 40 | thalamus L | 1 | 0 | 0 | 255 0 0 |
| 42 | 41 | thalamus R | 1 | 0 | 0 | 255 0 0 |
| 43 | 42 | pallidum L | 1 | 0 | 0 | 102 102 255 |
| 44 | 43 | pallidum R | 1 | 0 | 0 | 102 102 255 |
| 45 | 44 | corpus callosum | 0 | 1 | 0 | 255 177 100 |
| 46 | 45 | Lateral ventricle excluding temporal horn R | 0 | 0 | 1 | 255 177 100 |
| 47 | 46 | Lateral ventricle excluding temporal horn L | 0 | 0 | 1 | 0 255 255 |
| 48 | 47 | Lateral ventricle temporal horn R | 0 | 0 | 1 | 0 255 255 |
| 49 | 48 | Lateral ventricle temporal horn L | 0 | 0 | 1 | 255 0 255 |
| 50 | 49 | Third ventricle | 0 | 0 | 1 | 255 0 255 |
| 51 | 50 | FL precentral gyrus L | 1 | 1 | 0 | 102 0 0 |
| 52 | 51 | FL precentral gyrus R | 1 | 1 | 0 | 102 0 0 |
| 53 | 52 | FL straight gyrus L | 1 | 1 | 0 | 0 102 0 |
| 54 | 53 | FL straight gyrus R | 1 | 1 | 0 | 0 102 0 |
| 55 | 54 | FL anterior orbital gyrus L | 1 | 1 | 0 | 255 215 0 |
| 56 | 55 | FL anterior orbital gyrus R | 1 | 1 | 0 | 255 215 0 |
| 57 | 56 | FL inferior frontal gyrus L | 1 | 1 | 0 | 0 204 0 |
| 58 | 57 | FL inferior frontal gyrus R | 1 | 1 | 0 | 0 204 0 |
| 59 | 58 | FL superior frontal gyrus L | 1 | 1 | 0 | 255 0 0 |
| 60 | 59 | FL superior frontal gyrus R | 1 | 1 | 0 | 255 0 0 |
| 61 | 60 | PL postcentral gyrus L | 1 | 1 | 0 | 102 102 255 |
| 62 | 61 | PL postcentral gyrus R | 1 | 1 | 0 | 102 102 255 |
| 63 | 62 | PL superior parietal gyrus L | 1 | 1 | 0 | 255 177 100 |
| 64 | 63 | PL superior parietal gyrus R | 1 | 1 | 0 | 255 177 100 |
| 65 | 64 | OL lingual gyrus L | 1 | 1 | 0 | 0 255 255 |
| 66 | 65 | OL lingual gyrus R | 1 | 1 | 0 | 0 255 255 |
| 67 | 66 | OL cuneus L | 1 | 1 | 0 | 255 0 255 |
| 68 | 67 | OL cuneus R | 1 | 1 | 0 | 255 0 255 |
| 69 | 68 | FL medial orbital gyrus L | 1 | 1 | 0 | 102 0 0 |
| 70 | 69 | FL medial orbital gyrus R | 1 | 1 | 0 | 102 0 0 |
| 71 | 70 | FL lateral orbital gyrus L | 1 | 1 | 0 | 0 102 0 |
| 72 | 71 | FL lateral orbital gyrus R | 1 | 1 | 0 | 0 102 0 |
| 73 | 72 | FL posterior orbital gyrus L | 1 | 1 | 0 | 255 215 0 |
| 74 | 73 | FL posterior orbital gyrus R | 1 | 1 | 0 | 255 215 0 |
| 75 | 74 | substantia nigra L | 0 | 1 | 0 | 0 204 0 |
| 76 | 75 | substantia nigra R | 0 | 1 | 0 | 0 204 0 |
| 77 | 76 | FL subgenual frontal cortex L | 1 | 1 | 0 | 255 0 0 |
| 78 | 77 | FL subgenual frontal cortex R | 1 | 1 | 0 | 255 0 0 |
| 79 | 78 | FL subcallosal area L | 1 | 1 | 0 | 102 102 255 |
| 80 | 79 | FL subcallosal area R | 1 | 1 | 0 | 102 102 255 |
| 81 | 80 | FL pre-subgenual frontal cortex L | 1 | 1 | 0 | 255 177 100 |
| 82 | 81 | FL pre-subgenual frontal cortex R | 1 | 1 | 0 | 255 177 100 |
| 83 | 82 | TL superior temporal gyrus anterior part L | 1 | 1 | 0 | 0 255 255 |
| 84 | 83 | TL superior temporal gyrus anterior part R | 1 | 1 | 0 | 0 255 255 |
| 85 | 84 | PL supramarginal gyrus L | 1 | 1 | 0 | 255 0 255 |
| 86 | 85 | PL supramarginal gyrus R | 1 | 1 | 0 | 255 0 255 |
| 87 | 86 | insula anterior short gyrus L | 1 | 1 | 0 | 102 0 0 |
| 88 | 87 | insula anterior short gyrus R | 1 | 1 | 0 | 102 0 0 |
| 89 | 88 | insula middle short gyrus L | 1 | 1 | 0 | 0 102 0 |
| 90 | 89 | insula middle short gyrus R | 1 | 1 | 0 | 0 102 0 |
| 91 | 90 | insula posterior short gyrus L | 1 | 1 | 0 | 255 215 0 |
| 92 | 91 | insula posterior short gyrus R | 1 | 1 | 0 | 255 215 0 |
| 93 | 92 | insula anterior inferior cortex L | 1 | 1 | 0 | 0 204 0 |
| 94 | 93 | insula anterior inferior cortex R | 1 | 1 | 0 | 0 204 0 |
| 95 | 94 | insula anterior long gyrus L | 1 | 1 | 0 | 255 0 0 |
| 96 | 95 | insula anterior long gyrus R | 1 | 1 | 0 | 255 0 0 |