Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
171 lines
8.3 KiB
(Stored with Git Annex)
CSV
171 lines
8.3 KiB
(Stored with Git Annex)
CSV
ROIid;ROIabbr;ROIname;ROIcolor
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1;lPreCG;Left Precentral gyrus;203 142 203
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2;rPreCG;Right Precentral gyrus;203 142 203
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3;lSFG;Left Superior frontal gyrus-dorsolateral;0 117 115
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4;rSFG;Right Superior frontal gyrus-dorsolateral;0 117 115
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5;lMFG;Left Middle frontal gyrus;191 23 23
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6;rMFG;Right Middle frontal gyrus;191 23 23
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7;lIFGoperc;Left Inferior frontal gyrus-opercular part;198 198 2
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8;rIFGoperc;Right Inferior frontal gyrus-opercular part;198 198 2
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9;lIFGtriang;Left Inferior frontal gyrus-triangular part;149 203 203
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10;rIFGtriang;Right Inferior frontal gyrus-triangular part;149 203 203
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11;lIFGorb;Left IFG pars orbitalis;102 102 102
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12;rIFGorb;Right IFG pars orbitalis;102 102 102
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13;lROL;Left Rolandic operculum;203 203 108
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14;rROL;Right Rolandic operculum;203 203 108
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15;lSMA;Left Supplementary motor area;152 69 47
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16;rSMA;Right Supplementary motor area;152 69 47
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17;lOLF;Left Olfactory cortex;162 81 203
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18;rOLF;Right Olfactory cortex;162 81 203
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19;lSFGmedial;Left Superior frontal gyrus-medial;0 254 0
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20;rSFGmedial;Right Superior frontal gyrus-medial;0 254 0
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21;lPFCventmed;Left Superior frontal gyrus-medial orbital;203 203 3
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22;rPFCventmed;Right Superior frontal gyrus-medial orbital;203 203 3
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23;lREC;Left Gyrus rectus;76 47 127
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24;rREC;Right Gyrus rectus;76 47 127
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25;lOFCmed;Left Medial orbital gyrus;54 54 203
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26;rOFCmed;Right Medial orbital gyrus;54 54 203
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27;lOFCant;Left Anterior orbital gyrus;0 203 0
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28;rOFCant;Right Anterior orbital gyrus;0 203 0
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29;lOFCpost;Left Posterior orbital gyrus;162 0 54
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30;rOFCpost;Right Posterior orbital gyrus;162 0 54
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31;lOFClat;Left Lateral orbital gyrus;254 254 4
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32;rOFClat;Right Lateral orbital gyrus;254 254 4
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33;lINS;Left Insula;184 148 39
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34;rINS;Right Insula;184 148 39
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35;lACC;Left Anterior cingulate & paracingulate gyri;0 203 203
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36;rACC;Right Anterior cingulate & paracingulate gyri;0 203 203
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37;lMCC;Left Middle cingulate & paracingulate gyri;128 102 0
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38;rMCC;Right Middle cingulate & paracingulate gyri;128 102 0
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39;lPCC;Left Posterior cingulate gyrus;0 203 0
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40;rPCC;Right Posterior cingulate gyrus;0 203 0
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41;lHIP;Left Hippocampus;203 142 203
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42;rHIP;Right Hippocampus;203 142 203
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43;lPHG;Left Parahippocampal gyrus;162 54 13
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44;rPHG;Right Parahippocampal gyrus;162 54 13
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45;lAMYG;Left Amygdala;203 203 3
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46;rAMYG;Right Amygdala;203 203 3
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47;lCAL;Left Calcarine fissure and surrounding cortex;162 0 56
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48;rCAL;Right Calcarine fissure and surrounding cortex;162 0 56
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49;lCUN;Left Cuneus;203 102 0
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50;rCUN;Right Cuneus;203 102 0
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51;lLING;Left Lingual gyrus;0 200 203
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52;rLING;Right Lingual gyrus;0 200 203
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53;lSOG;Left Superior occipital gyrus;94 0 26
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54;rSOG;Right Superior occipital gyrus;94 0 26
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55;lMOG;Left Middle occipital gyrus;204 204 204
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56;rMOG;Right Middle occipital gyrus;204 204 204
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57;lIOG;Left Inferior occipital gyrus;72 72 200
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58;rIOG;Right Inferior occipital gyrus;72 72 200
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59;lFFG;Left Fusiform gyrus;81 0 176
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60;rFFG;Right Fusiform gyrus;81 0 176
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61;lPoCG;Left Postcentral gyrus;162 0 54
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62;rPoCG;Right Postcentral gyrus;162 0 54
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63;lSPG;Left Superior parietal gyrus;134 53 0
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64;rSPG;Right Superior parietal gyrus;134 53 0
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65;lIPG;Left Inferior parietal gyrus-excluding supramarginal and angular gyri;122 203 67
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66;rIPG;Right Inferior parietal gyrus-excluding supramarginal and angular gyri;122 203 67
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67;lSMG;Left SupraMarginal gyrus;94 69 54
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68;rSMG;Right SupraMarginal gyrus;94 69 54
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69;lANG;Left Angular gyrus;0 135 203
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70;rANG;Right Angular gyrus;0 135 203
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71;lPCUN;Left Precuneus;13 176 67
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72;rPCUN;Right Precuneus;13 176 67
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73;lPCL;Left Paracentral lobule;0 200 0
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74;rPCL;Right Paracentral lobule;0 200 0
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75;lCAU;Left Caudate nucleus;108 0 162
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76;rCAU;Right Caudate nucleus;108 0 162
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77;lPUT;Left Lenticular nucleus-Putamen;61 61 203
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78;rPUT;Right Lenticular nucleus-Putamen;61 61 203
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79;lPAL;Left Lenticular nucleus-Pallidum;203 203 0
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80;rPAL;Right Lenticular nucleus-Pallidum;203 203 0
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81;lTHA;Left Thalamus;162 54 13
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82;rTHA;Right Thalamus;162 54 13
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83;lHES;Left Heschls gyrus;94 13 13
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84;rHES;Right Heschls gyrus;94 13 13
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85;lSTG;Left Superior temporal gyrus;203 53 0
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86;rSTG;Right Superior temporal gyrus;203 53 0
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87;lTPOsup;Left Temporal pole: superior temporal gyrus;38 0 83
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88;rTPOsup;Right Temporal pole: superior temporal gyrus;38 0 83
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89;lMTG;Left Middle temporal gyrus;162 0 56
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90;rMTG;Right Middle temporal gyrus;162 0 56
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91;lTPOmid;Left Temporal pole: middle temporal gyrus;0 94 92
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92;rTPOmid;Right Temporal pole: middle temporal gyrus;0 94 92
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93;lITG;Left Inferior temporal gyrus;128 102 0
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94;rITG;Right Inferior temporal gyrus;128 102 0
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95;lCERCRU1;Left Crus I of cerebellar hemisphere;140 36 42
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96;rCERCRU1;Right Crus I of cerebellar hemisphere;140 36 42
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97;lCERCRU2;Left Crus II of cerebellar hemisphere;61 61 203
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98;rCERCRU2;Right Crus II of cerebellar hemisphere;61 61 203
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99;lCER3;Left Lobule III of cerebellar hemisphere;0 152 64
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100;rCER3;Right Lobule III of cerebellar hemisphere;0 152 64
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101;lCER4_5;Left Lobule IV-V of cerebellar hemisphere;203 149 149
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102;rCER4_5;Right Lobule IV-V of cerebellar hemisphere;203 149 149
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103;lCER6;Left Lobule VI of cerebellar hemisphere;0 94 92
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104;rCER6;Right Lobule VI of cerebellar hemisphere;0 94 92
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105;lCER7b;Left Lobule VIIB of cerebellar hemisphere;203 0 67
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106;rCER7b;Right Lobule VIIB of cerebellar hemisphere;203 0 67
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107;lCER8;Left Lobule VIII of cerebellar hemisphere;203 149 149
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108;rCER8;Right Lobule VIII of cerebellar hemisphere;203 149 149
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109;lCER9;Left Lobule IX of cerebellar hemisphere;94 17 76
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110;rCER9;Right Lobule IX of cerebellar hemisphere;94 17 76
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111;lCER10;Left Lobule X of cerebellar hemisphere;203 67 16
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112;rCER10;Right Lobule X of cerebellar hemisphere;203 67 16
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113;VER1_2;Lobule I-II of vermis;254 177 254
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114;VER3;Lobule III of vermis;239 29 29
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115;VER4_5;Lobule IV-V of vermis;254 254 0
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116;VER6;Lobule VI of vermis;101 0 220
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117;VER7;Lobule VII of vermis;203 203 3
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118;VER8;Lobule VIII of vermis;0 250 0
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119;VER9;Lobule IX of vermis;160 127 0
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120;VER10;Lobule X of vermis;0 203 0
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121;ltAV;Left Thalamus-Anteroventral Nucleus;254 66 0
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122;rtAV;Right Thalamus-Anteroventral Nucleus;191 23 23
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123;ltLP;Left Lateral posterior;254 254 4
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124;rtLP;Right Lateral posterior;128 128 128
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125;ltVA;Left Ventral anterior;217 217 217
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126;rtVA;Right Ventral anterior;0 117 115
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127;ltVL;Left Ventral lateral;90 90 250
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128;rtVL;Right Ventral lateral;230 185 49
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129;ltVPL;Left Ventral posterolateral;230 185 49
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130;rtVPL;Right Ventral posterolateral;202 0 70
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131;ltIL;Left Intralaminar;162 0 56
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132;rtIL;Right Intralaminar;76 76 254
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133;ltRe;Left Reuniens;76 76 254
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134;rtRe;Right Reuniens;0 117 115
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135;ltMDm;Left Mediodorsal medial magnocellular;203 203 3
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136;rtMDm;Right Mediodorsal medial magnocellular;0 203 0
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137;ltMDl;Left Mediodorsal lateral parvocellular;0 250 0
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138;rtMDl;Right Mediodorsal lateral parvocellular;254 254 0
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139;ltLGN;Left Lateral geniculate;202 0 70
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140;rtLGN;Right Lateral geniculate;254 186 186
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141;ltMGN;Left Medial Geniculate;0 117 115
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142;rtMGN;Right Medial Geniculate;203 67 16
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143;ltPuA;Left Pulvinar anterior;203 67 16
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144;rtPuA;Right Pulvinar anterior;118 0 33
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145;ltPuM;Left Pulvinar medial;0 190 80
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146;rtPuM;Right Pulvinar medial;118 86 68
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147;ltPuL;Left Pulvinar lateral;0 169 254
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148;rtPuL;Right Pulvinar lateral;162 81 203
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149;ltPuI;Left Pulvinar inferior;203 0 67
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150;rtPuI;Right Pulvinar inferior;0 254 0
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151;lACCsub;Left Anterior cingulate cortex-subgenual;254 254 4
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152;rACCsub;Right Anterior cingulate cortex-subgenual;149 203 203
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153;lACCpre;Left Anterior cingulate cortex-pregenual;186 254 254
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154;rACCpre;Right Anterior cingulate cortex-pregenual;67 67 254
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155;lACCsup;Left Anterior cingulate cortex-supracallosal;254 254 135
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156;rACCsup;Right Anterior cingulate cortex-supracallosal;203 67 16
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157;lNacc;Left Nucleus accumbens;168 66 0
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158;rNacc;Right Nucleus accumbens;254 186 186
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159;lVTA;Left Ventral tegmental area;254 66 0
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160;rVTA;Right Ventral tegmental area;191 23 23
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161;lSNpc;Left Substantia nigra-pars compacta;162 0 56
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162;rSNpc;Right Substantia nigra-pars compacta;198 198 2
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163;lSNpr;Left Substantia nigra-pars reticulata;101 0 220
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164;rSNpr;Right Substantia nigra-pars reticulata;135 0 203
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165;lRedN;Left Red nucleus;190 86 59
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166;rRedN;Right Red nucleus;118 86 68
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167;lLC;Left Locus coeruleus;135 0 203
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168;rLC;Right Locus coeruleus;76 76 254
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169;RapheD;Raphe nucleus-dorsal;118 16 16
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170;RapheM;Raphe nucleus-median;162 54 13 |