ds005479_cat12.9/sub-21/mri/aal3_sub-21_T1w.csv at base

Watch

Felix Hoffstaedter 28ba30be16 [DATALAD RUNCMD] Compute sub-21

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n        mkdir -p {outputs[0]} || true         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.9_r2665.simg"
 ],
 "inputs": [
  "inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
 ],
 "outputs": [
  "sub-21"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

2025-05-23 03:12:19 +02:00

8.3 KiB (Stored with Git Annex)

Raw Permalink Blame History

1	ROIid	ROIabbr	ROIname	ROIcolor
2	1	lPreCG	Left Precentral gyrus	203 142 203
3	2	rPreCG	Right Precentral gyrus	203 142 203
4	3	lSFG	Left Superior frontal gyrus-dorsolateral	0 117 115
5	4	rSFG	Right Superior frontal gyrus-dorsolateral	0 117 115
6	5	lMFG	Left Middle frontal gyrus	191 23 23
7	6	rMFG	Right Middle frontal gyrus	191 23 23
8	7	lIFGoperc	Left Inferior frontal gyrus-opercular part	198 198 2
9	8	rIFGoperc	Right Inferior frontal gyrus-opercular part	198 198 2
10	9	lIFGtriang	Left Inferior frontal gyrus-triangular part	149 203 203
11	10	rIFGtriang	Right Inferior frontal gyrus-triangular part	149 203 203
12	11	lIFGorb	Left IFG pars orbitalis	102 102 102
13	12	rIFGorb	Right IFG pars orbitalis	102 102 102
14	13	lROL	Left Rolandic operculum	203 203 108
15	14	rROL	Right Rolandic operculum	203 203 108
16	15	lSMA	Left Supplementary motor area	152 69 47
17	16	rSMA	Right Supplementary motor area	152 69 47
18	17	lOLF	Left Olfactory cortex	162 81 203
19	18	rOLF	Right Olfactory cortex	162 81 203
20	19	lSFGmedial	Left Superior frontal gyrus-medial	0 254 0
21	20	rSFGmedial	Right Superior frontal gyrus-medial	0 254 0
22	21	lPFCventmed	Left Superior frontal gyrus-medial orbital	203 203 3
23	22	rPFCventmed	Right Superior frontal gyrus-medial orbital	203 203 3
24	23	lREC	Left Gyrus rectus	76 47 127
25	24	rREC	Right Gyrus rectus	76 47 127
26	25	lOFCmed	Left Medial orbital gyrus	54 54 203
27	26	rOFCmed	Right Medial orbital gyrus	54 54 203
28	27	lOFCant	Left Anterior orbital gyrus	0 203 0
29	28	rOFCant	Right Anterior orbital gyrus	0 203 0
30	29	lOFCpost	Left Posterior orbital gyrus	162 0 54
31	30	rOFCpost	Right Posterior orbital gyrus	162 0 54
32	31	lOFClat	Left Lateral orbital gyrus	254 254 4
33	32	rOFClat	Right Lateral orbital gyrus	254 254 4
34	33	lINS	Left Insula	184 148 39
35	34	rINS	Right Insula	184 148 39
36	35	lACC	Left Anterior cingulate & paracingulate gyri	0 203 203
37	36	rACC	Right Anterior cingulate & paracingulate gyri	0 203 203
38	37	lMCC	Left Middle cingulate & paracingulate gyri	128 102 0
39	38	rMCC	Right Middle cingulate & paracingulate gyri	128 102 0
40	39	lPCC	Left Posterior cingulate gyrus	0 203 0
41	40	rPCC	Right Posterior cingulate gyrus	0 203 0
42	41	lHIP	Left Hippocampus	203 142 203
43	42	rHIP	Right Hippocampus	203 142 203
44	43	lPHG	Left Parahippocampal gyrus	162 54 13
45	44	rPHG	Right Parahippocampal gyrus	162 54 13
46	45	lAMYG	Left Amygdala	203 203 3
47	46	rAMYG	Right Amygdala	203 203 3
48	47	lCAL	Left Calcarine fissure and surrounding cortex	162 0 56
49	48	rCAL	Right Calcarine fissure and surrounding cortex	162 0 56
50	49	lCUN	Left Cuneus	203 102 0
51	50	rCUN	Right Cuneus	203 102 0
52	51	lLING	Left Lingual gyrus	0 200 203
53	52	rLING	Right Lingual gyrus	0 200 203
54	53	lSOG	Left Superior occipital gyrus	94 0 26
55	54	rSOG	Right Superior occipital gyrus	94 0 26
56	55	lMOG	Left Middle occipital gyrus	204 204 204
57	56	rMOG	Right Middle occipital gyrus	204 204 204
58	57	lIOG	Left Inferior occipital gyrus	72 72 200
59	58	rIOG	Right Inferior occipital gyrus	72 72 200
60	59	lFFG	Left Fusiform gyrus	81 0 176
61	60	rFFG	Right Fusiform gyrus	81 0 176
62	61	lPoCG	Left Postcentral gyrus	162 0 54
63	62	rPoCG	Right Postcentral gyrus	162 0 54
64	63	lSPG	Left Superior parietal gyrus	134 53 0
65	64	rSPG	Right Superior parietal gyrus	134 53 0
66	65	lIPG	Left Inferior parietal gyrus-excluding supramarginal and angular gyri	122 203 67
67	66	rIPG	Right Inferior parietal gyrus-excluding supramarginal and angular gyri	122 203 67
68	67	lSMG	Left SupraMarginal gyrus	94 69 54
69	68	rSMG	Right SupraMarginal gyrus	94 69 54
70	69	lANG	Left Angular gyrus	0 135 203
71	70	rANG	Right Angular gyrus	0 135 203
72	71	lPCUN	Left Precuneus	13 176 67
73	72	rPCUN	Right Precuneus	13 176 67
74	73	lPCL	Left Paracentral lobule	0 200 0
75	74	rPCL	Right Paracentral lobule	0 200 0
76	75	lCAU	Left Caudate nucleus	108 0 162
77	76	rCAU	Right Caudate nucleus	108 0 162
78	77	lPUT	Left Lenticular nucleus-Putamen	61 61 203
79	78	rPUT	Right Lenticular nucleus-Putamen	61 61 203
80	79	lPAL	Left Lenticular nucleus-Pallidum	203 203 0
81	80	rPAL	Right Lenticular nucleus-Pallidum	203 203 0
82	81	lTHA	Left Thalamus	162 54 13
83	82	rTHA	Right Thalamus	162 54 13
84	83	lHES	Left Heschls gyrus	94 13 13
85	84	rHES	Right Heschls gyrus	94 13 13
86	85	lSTG	Left Superior temporal gyrus	203 53 0
87	86	rSTG	Right Superior temporal gyrus	203 53 0
88	87	lTPOsup	Left Temporal pole: superior temporal gyrus	38 0 83
89	88	rTPOsup	Right Temporal pole: superior temporal gyrus	38 0 83
90	89	lMTG	Left Middle temporal gyrus	162 0 56
91	90	rMTG	Right Middle temporal gyrus	162 0 56
92	91	lTPOmid	Left Temporal pole: middle temporal gyrus	0 94 92
93	92	rTPOmid	Right Temporal pole: middle temporal gyrus	0 94 92
94	93	lITG	Left Inferior temporal gyrus	128 102 0
95	94	rITG	Right Inferior temporal gyrus	128 102 0
96	95	lCERCRU1	Left Crus I of cerebellar hemisphere	140 36 42
97	96	rCERCRU1	Right Crus I of cerebellar hemisphere	140 36 42
98	97	lCERCRU2	Left Crus II of cerebellar hemisphere	61 61 203
99	98	rCERCRU2	Right Crus II of cerebellar hemisphere	61 61 203
100	99	lCER3	Left Lobule III of cerebellar hemisphere	0 152 64
101	100	rCER3	Right Lobule III of cerebellar hemisphere	0 152 64
102	101	lCER4_5	Left Lobule IV-V of cerebellar hemisphere	203 149 149
103	102	rCER4_5	Right Lobule IV-V of cerebellar hemisphere	203 149 149
104	103	lCER6	Left Lobule VI of cerebellar hemisphere	0 94 92
105	104	rCER6	Right Lobule VI of cerebellar hemisphere	0 94 92
106	105	lCER7b	Left Lobule VIIB of cerebellar hemisphere	203 0 67
107	106	rCER7b	Right Lobule VIIB of cerebellar hemisphere	203 0 67
108	107	lCER8	Left Lobule VIII of cerebellar hemisphere	203 149 149
109	108	rCER8	Right Lobule VIII of cerebellar hemisphere	203 149 149
110	109	lCER9	Left Lobule IX of cerebellar hemisphere	94 17 76
111	110	rCER9	Right Lobule IX of cerebellar hemisphere	94 17 76
112	111	lCER10	Left Lobule X of cerebellar hemisphere	203 67 16
113	112	rCER10	Right Lobule X of cerebellar hemisphere	203 67 16
114	113	VER1_2	Lobule I-II of vermis	254 177 254
115	114	VER3	Lobule III of vermis	239 29 29
116	115	VER4_5	Lobule IV-V of vermis	254 254 0
117	116	VER6	Lobule VI of vermis	101 0 220
118	117	VER7	Lobule VII of vermis	203 203 3
119	118	VER8	Lobule VIII of vermis	0 250 0
120	119	VER9	Lobule IX of vermis	160 127 0
121	120	VER10	Lobule X of vermis	0 203 0
122	121	ltAV	Left Thalamus-Anteroventral Nucleus	254 66 0
123	122	rtAV	Right Thalamus-Anteroventral Nucleus	191 23 23
124	123	ltLP	Left Lateral posterior	254 254 4
125	124	rtLP	Right Lateral posterior	128 128 128
126	125	ltVA	Left Ventral anterior	217 217 217
127	126	rtVA	Right Ventral anterior	0 117 115
128	127	ltVL	Left Ventral lateral	90 90 250
129	128	rtVL	Right Ventral lateral	230 185 49
130	129	ltVPL	Left Ventral posterolateral	230 185 49
131	130	rtVPL	Right Ventral posterolateral	202 0 70
132	131	ltIL	Left Intralaminar	162 0 56
133	132	rtIL	Right Intralaminar	76 76 254
134	133	ltRe	Left Reuniens	76 76 254
135	134	rtRe	Right Reuniens	0 117 115
136	135	ltMDm	Left Mediodorsal medial magnocellular	203 203 3
137	136	rtMDm	Right Mediodorsal medial magnocellular	0 203 0
138	137	ltMDl	Left Mediodorsal lateral parvocellular	0 250 0
139	138	rtMDl	Right Mediodorsal lateral parvocellular	254 254 0
140	139	ltLGN	Left Lateral geniculate	202 0 70
141	140	rtLGN	Right Lateral geniculate	254 186 186
142	141	ltMGN	Left Medial Geniculate	0 117 115
143	142	rtMGN	Right Medial Geniculate	203 67 16
144	143	ltPuA	Left Pulvinar anterior	203 67 16
145	144	rtPuA	Right Pulvinar anterior	118 0 33
146	145	ltPuM	Left Pulvinar medial	0 190 80
147	146	rtPuM	Right Pulvinar medial	118 86 68
148	147	ltPuL	Left Pulvinar lateral	0 169 254
149	148	rtPuL	Right Pulvinar lateral	162 81 203
150	149	ltPuI	Left Pulvinar inferior	203 0 67
151	150	rtPuI	Right Pulvinar inferior	0 254 0
152	151	lACCsub	Left Anterior cingulate cortex-subgenual	254 254 4
153	152	rACCsub	Right Anterior cingulate cortex-subgenual	149 203 203
154	153	lACCpre	Left Anterior cingulate cortex-pregenual	186 254 254
155	154	rACCpre	Right Anterior cingulate cortex-pregenual	67 67 254
156	155	lACCsup	Left Anterior cingulate cortex-supracallosal	254 254 135
157	156	rACCsup	Right Anterior cingulate cortex-supracallosal	203 67 16
158	157	lNacc	Left Nucleus accumbens	168 66 0
159	158	rNacc	Right Nucleus accumbens	254 186 186
160	159	lVTA	Left Ventral tegmental area	254 66 0
161	160	rVTA	Right Ventral tegmental area	191 23 23
162	161	lSNpc	Left Substantia nigra-pars compacta	162 0 56
163	162	rSNpc	Right Substantia nigra-pars compacta	198 198 2
164	163	lSNpr	Left Substantia nigra-pars reticulata	101 0 220
165	164	rSNpr	Right Substantia nigra-pars reticulata	135 0 203
166	165	lRedN	Left Red nucleus	190 86 59
167	166	rRedN	Right Red nucleus	118 86 68
168	167	lLC	Left Locus coeruleus	135 0 203
169	168	rLC	Right Locus coeruleus	76 76 254
170	169	RapheD	Raphe nucleus-dorsal	118 16 16
171	170	RapheM	Raphe nucleus-median	162 54 13

8.3 KiB (Stored with Git Annex) Raw Permalink Blame History

8.3 KiB (Stored with Git Annex)

Raw Permalink Blame History