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ds004173-catqc/logs/10071102.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1300102/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300102/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300102/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:22 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300102/ds/sub-945652/sub-945652_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-945652/sub-945652_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 51s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 5s
36s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
6s
Use initial fine affine registration. 56s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 37s
Update probability maps 8s
75s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 6s
94s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
80s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 12s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 47s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
93s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 24s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
5s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 26s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 11s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 82s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 143s
Write results 147s
444s
Quality check 14s
/var/lib/condor/execute/dir_1300102/ds/sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 41 second(s).
Image Quality Rating (IQR): 87.83% (B+)
GM volume (GMV): 49.55% (579.86 / 1170.15 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/mri
Reports are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/report
Labels are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/label
------------------------------------------------------------------------
22-Oct-2025 01:01:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:01:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-945652/anat/sub-945652_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300102/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300102/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.mat (file)
add(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.xml (file)
add(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/m0wp1sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/mwp1sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/p0sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/wp0sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.mat (file)
add(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.xml (file)
add(ok): sub-945652/report/catlog_sub-945652_acq-standard_T1w.txt (file)
add(ok): sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:02:37 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:02:37 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300102/ds/sub-945652/sub-945652_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-945652/sub-945652_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 9s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 6s
Final scaling 8s
50s
Correct center-of-mass 9s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
11s
Use initial fine affine registration. 58s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 12s
Update Skull-Stripping 37s
Update probability maps 8s
75s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 8s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 20s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
79s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 11s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
95s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
9s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 19s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 27s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 65s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 109s
Write results 112s
368s
Quality check 13s
/var/lib/condor/execute/dir_1300102/ds/sub-945652/report/catreport_sub-945652_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 51 second(s).
Image Quality Rating (IQR): 83.08% (B-)
GM volume (GMV): 48.11% (549.75 / 1142.80 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/mri
Reports are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/report
Labels are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/label
------------------------------------------------------------------------
22-Oct-2025 01:24:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:24:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-945652/anat/sub-945652_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.mat (file)
unlock(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-945652/mri/m0wp1sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/mwp1sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/p0sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-945652/mri/wp0sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.mat (file)
unlock(ok): sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300102/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-945652/label/catROI_sub-945652_acq-headmotion2_T1w.mat (file)
add(ok): sub-945652/label/catROI_sub-945652_acq-headmotion2_T1w.xml (file)
add(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/m0wp1sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/mwp1sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/p0sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/wp0sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/report/cat_sub-945652_acq-headmotion2_T1w.mat (file)
add(ok): sub-945652/report/cat_sub-945652_acq-headmotion2_T1w.xml (file)
add(ok): sub-945652/report/catlog_sub-945652_acq-headmotion2_T1w.txt (file)
add(ok): sub-945652/report/catreport_sub-945652_acq-headmotion2_T1w.pdf (file)
add(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/m0wp1sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/mwp1sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/p0sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/wp0sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.mat (file)
add(ok): sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:26:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:26:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300102/ds/sub-945652/sub-945652_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-945652/sub-945652_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 7s
48s
Correct center-of-mass 18s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
15s
Use initial fine affine registration. 61s
SPM preprocessing 1 (estimate 2): 83s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 12s
Update Skull-Stripping 36s
Update probability maps 8s
75s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 13s
Fast Optimized Shooting registration 9s
96s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 20s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
81s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 13s
Ventricle detection 12s
Blood vessel detection 6s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
99s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 25s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 3s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
9s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 25s
ROI estimation of 'lpba40' atlas 7s
ROI estimation of 'hammers' atlas 18s
ROI estimation of 'thalamus' atlas 1s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 6s
ROI estimation of 'aal3' atlas 10s
ROI estimation of 'mori' atlas 13s
ROI estimation of 'anatomy3' atlas 19s
ROI estimation of 'julichbrain' atlas 25s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 4s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 70s
Write results 71s
292s
Quality check 11s
/var/lib/condor/execute/dir_1300102/ds/sub-945652/report/catreport_sub-945652_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 20 minute(s) and 44 second(s).
Image Quality Rating (IQR): 84.56% (B)
GM volume (GMV): 49.40% (560.66 / 1135.00 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/mri
Reports are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/report
Labels are saved in /var/lib/condor/execute/dir_1300102/ds/sub-945652/label
------------------------------------------------------------------------
22-Oct-2025 01:46:52 - Done 'CAT12: Segmentation'
22-Oct-2025 01:46:52 - Done
Bye for now...
get(ok): sourcedata/raw/sub-945652/anat/sub-945652_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-945652/label/catROI_sub-945652_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.mat (file)
unlock(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-945652/mri/m0wp1sub-945652_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/m0wp1sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/mwp1sub-945652_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/mwp1sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/p0sub-945652_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/p0sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-945652/mri/wp0sub-945652_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-945652/mri/wp0sub-945652_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-945652/report/cat_sub-945652_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.mat (file)
unlock(ok): sub-945652/report/catreport_sub-945652_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300102/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-945652/label/catROI_sub-945652_acq-headmotion1_T1w.mat (file)
add(ok): sub-945652/label/catROI_sub-945652_acq-headmotion1_T1w.xml (file)
add(ok): sub-945652/mri/it_sub-945652_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/m0wp1sub-945652_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-945652/mri/mwp1sub-945652_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-945652/mri/p0sub-945652_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-945652/mri/t_sub-945652_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/wp0sub-945652_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-945652/report/cat_sub-945652_acq-headmotion1_T1w.mat (file)
add(ok): sub-945652/report/cat_sub-945652_acq-headmotion1_T1w.xml (file)
add(ok): sub-945652/report/catlog_sub-945652_acq-headmotion1_T1w.txt (file)
add(ok): sub-945652/report/catreport_sub-945652_acq-headmotion1_T1w.pdf (file)
add(ok): sub-945652/label/catROI_sub-945652_acq-headmotion2_T1w.mat (file)
add(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/m0wp1sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/m0wp1sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/mwp1sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/mwp1sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/p0sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/p0sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-945652/mri/wp0sub-945652_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-945652/mri/wp0sub-945652_acq-standard_T1w.nii.gz (file)
add(ok): sub-945652/report/cat_sub-945652_acq-headmotion2_T1w.mat (file)
add(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.mat (file)
add(ok): sub-945652/report/catreport_sub-945652_acq-headmotion2_T1w.pdf (file)
add(ok): sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-945652/label/catROI_sub-945652_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/label/catROI_sub-945652_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/label/catROI_sub-945652_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/it_sub-945652_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/it_sub-945652_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/it_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/it_sub-945652_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/m0wp1sub-945652_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/m0wp1sub-945652_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/m0wp1sub-945652_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/mwp1sub-945652_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/mwp1sub-945652_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/mwp1sub-945652_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/p0sub-945652_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/p0sub-945652_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/p0sub-945652_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/t_sub-945652_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/t_sub-945652_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/t_sub-945652_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/t_sub-945652_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/wp0sub-945652_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/wp0sub-945652_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/mri/wp0sub-945652_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-945652/report/cat_sub-945652_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/report/cat_sub-945652_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/report/cat_sub-945652_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-945652/report/catreport_sub-945652_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-945652/report/catreport_sub-945652_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-945652/report/catreport_sub-945652_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000948 seconds
flock: executing git
SUCCESS
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