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ds004173-catqc/logs/10071079.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197366/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197366/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197366/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197366/ds/sub-337488/sub-337488_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-337488/sub-337488_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 9s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.08) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
143s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 40s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 58s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 202s
Write results 208s
788s
Quality check 19s
/var/lib/condor/execute/dir_3197366/ds/sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 46 second(s).
Image Quality Rating (IQR): 87.91% (B+)
GM volume (GMV): 45.79% (654.21 / 1428.57 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/mri
Reports are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/report
Labels are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/label
------------------------------------------------------------------------
22-Oct-2025 01:13:57 - Done 'CAT12: Segmentation'
22-Oct-2025 01:13:57 - Done
Bye for now...
get(ok): sourcedata/raw/sub-337488/anat/sub-337488_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197366/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197366/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.mat (file)
add(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.xml (file)
add(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/m0wp1sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/mwp1sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/p0sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/wp0sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.mat (file)
add(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.xml (file)
add(ok): sub-337488/report/catlog_sub-337488_acq-standard_T1w.txt (file)
add(ok): sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:58 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:58 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197366/ds/sub-337488/sub-337488_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-337488/sub-337488_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 49s
Update probability maps 10s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
106s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 78s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
142s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 40s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 38s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 135s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 191s
Write results 196s
723s
Quality check 20s
/var/lib/condor/execute/dir_3197366/ds/sub-337488/report/catreport_sub-337488_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 36 second(s).
Image Quality Rating (IQR): 85.45% (B)
GM volume (GMV): 44.65% (634.88 / 1421.87 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/mri
Reports are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/report
Labels are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/label
------------------------------------------------------------------------
22-Oct-2025 01:46:37 - Done 'CAT12: Segmentation'
22-Oct-2025 01:46:37 - Done
Bye for now...
get(ok): sourcedata/raw/sub-337488/anat/sub-337488_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.mat (file)
unlock(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-337488/mri/m0wp1sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/mwp1sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/p0sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-337488/mri/wp0sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.mat (file)
unlock(ok): sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197366/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-337488/label/catROI_sub-337488_acq-headmotion2_T1w.mat (file)
add(ok): sub-337488/label/catROI_sub-337488_acq-headmotion2_T1w.xml (file)
add(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/m0wp1sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/mwp1sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/p0sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/wp0sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/report/cat_sub-337488_acq-headmotion2_T1w.mat (file)
add(ok): sub-337488/report/cat_sub-337488_acq-headmotion2_T1w.xml (file)
add(ok): sub-337488/report/catlog_sub-337488_acq-headmotion2_T1w.txt (file)
add(ok): sub-337488/report/catreport_sub-337488_acq-headmotion2_T1w.pdf (file)
add(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/m0wp1sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/mwp1sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/p0sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/wp0sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.mat (file)
add(ok): sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:47:44 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:47:44 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197366/ds/sub-337488/sub-337488_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-337488/sub-337488_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 9s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 11s
115s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.16) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 79s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
140s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 23s
ROI estimation of 'anatomy3' atlas 34s
ROI estimation of 'julichbrain' atlas 46s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 140s
Write results 142s
524s
Quality check 16s
/var/lib/condor/execute/dir_3197366/ds/sub-337488/report/catreport_sub-337488_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 37 second(s).
Image Quality Rating (IQR): 87.01% (B+)
GM volume (GMV): 44.43% (625.39 / 1407.57 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/mri
Reports are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/report
Labels are saved in /var/lib/condor/execute/dir_3197366/ds/sub-337488/label
------------------------------------------------------------------------
22-Oct-2025 02:15:25 - Done 'CAT12: Segmentation'
22-Oct-2025 02:15:25 - Done
Bye for now...
get(ok): sourcedata/raw/sub-337488/anat/sub-337488_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-337488/label/catROI_sub-337488_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.mat (file)
unlock(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-337488/mri/m0wp1sub-337488_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/m0wp1sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/mwp1sub-337488_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/mwp1sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/p0sub-337488_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/p0sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-337488/mri/wp0sub-337488_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-337488/mri/wp0sub-337488_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-337488/report/cat_sub-337488_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.mat (file)
unlock(ok): sub-337488/report/catreport_sub-337488_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197366/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-337488/label/catROI_sub-337488_acq-headmotion1_T1w.mat (file)
add(ok): sub-337488/label/catROI_sub-337488_acq-headmotion1_T1w.xml (file)
add(ok): sub-337488/mri/it_sub-337488_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/m0wp1sub-337488_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-337488/mri/mwp1sub-337488_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-337488/mri/p0sub-337488_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-337488/mri/t_sub-337488_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/wp0sub-337488_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-337488/report/cat_sub-337488_acq-headmotion1_T1w.mat (file)
add(ok): sub-337488/report/cat_sub-337488_acq-headmotion1_T1w.xml (file)
add(ok): sub-337488/report/catlog_sub-337488_acq-headmotion1_T1w.txt (file)
add(ok): sub-337488/report/catreport_sub-337488_acq-headmotion1_T1w.pdf (file)
add(ok): sub-337488/label/catROI_sub-337488_acq-headmotion2_T1w.mat (file)
add(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/m0wp1sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/m0wp1sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/mwp1sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/mwp1sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/p0sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/p0sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-337488/mri/wp0sub-337488_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-337488/mri/wp0sub-337488_acq-standard_T1w.nii.gz (file)
add(ok): sub-337488/report/cat_sub-337488_acq-headmotion2_T1w.mat (file)
add(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.mat (file)
add(ok): sub-337488/report/catreport_sub-337488_acq-headmotion2_T1w.pdf (file)
add(ok): sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-337488/label/catROI_sub-337488_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/label/catROI_sub-337488_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/label/catROI_sub-337488_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/it_sub-337488_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/it_sub-337488_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/it_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/it_sub-337488_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/m0wp1sub-337488_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/m0wp1sub-337488_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/m0wp1sub-337488_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/mwp1sub-337488_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/mwp1sub-337488_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/mwp1sub-337488_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/p0sub-337488_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/p0sub-337488_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/p0sub-337488_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/t_sub-337488_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/t_sub-337488_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/t_sub-337488_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/t_sub-337488_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/wp0sub-337488_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/wp0sub-337488_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/mri/wp0sub-337488_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-337488/report/cat_sub-337488_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/report/cat_sub-337488_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/report/cat_sub-337488_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-337488/report/catreport_sub-337488_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-337488/report/catreport_sub-337488_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-337488/report/catreport_sub-337488_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000057 seconds
flock: executing git
SUCCESS
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