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ds004173-catqc/logs/10071020.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1149332/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1149332/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149332/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:26 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149332/ds/sub-228373/sub-228373_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-228373/sub-228373_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
44s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
77s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
82s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 4s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.26) 13s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 54s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
106s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 61s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 99s
Write results 101s
567s
Quality check 13s
/var/lib/condor/execute/dir_1149332/ds/sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 54 second(s).
Image Quality Rating (IQR): 84.63% (B)
GM volume (GMV): 45.65% (593.95 / 1301.08 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/mri
Reports are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/report
Labels are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/label
------------------------------------------------------------------------
22-Oct-2025 01:06:23 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:23 - Done
Bye for now...
get(ok): sourcedata/raw/sub-228373/anat/sub-228373_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1149332/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1149332/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.mat (file)
add(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.xml (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/p0sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/wp0sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.mat (file)
add(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.xml (file)
add(ok): sub-228373/report/catlog_sub-228373_acq-headmotion2_T1w.txt (file)
add(ok): sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:07:04 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:07:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149332/ds/sub-228373/sub-228373_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-228373/sub-228373_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 10s
83s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 10s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.15) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
110s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 27s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 55s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 71s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 90s
Write results 92s
475s
Quality check 13s
/var/lib/condor/execute/dir_1149332/ds/sub-228373/report/catreport_sub-228373_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 16 second(s).
Image Quality Rating (IQR): 88.02% (B+)
GM volume (GMV): 48.57% (637.23 / 1311.97 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/mri
Reports are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/report
Labels are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/label
------------------------------------------------------------------------
22-Oct-2025 01:31:22 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:22 - Done
Bye for now...
get(ok): sourcedata/raw/sub-228373/anat/sub-228373_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/p0sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-228373/mri/wp0sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149332/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-228373/label/catROI_sub-228373_acq-standard_T1w.mat (file)
add(ok): sub-228373/label/catROI_sub-228373_acq-standard_T1w.xml (file)
add(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/m0wp1sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/mri/mwp1sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/mri/p0sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/wp0sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/report/cat_sub-228373_acq-standard_T1w.mat (file)
add(ok): sub-228373/report/cat_sub-228373_acq-standard_T1w.xml (file)
add(ok): sub-228373/report/catlog_sub-228373_acq-standard_T1w.txt (file)
add(ok): sub-228373/report/catreport_sub-228373_acq-standard_T1w.pdf (file)
add(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/p0sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/wp0sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.mat (file)
add(ok): sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:11 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:11 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1149332/ds/sub-228373/sub-228373_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-228373/sub-228373_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
40s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 9s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.28) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 16s
Ventricle detection 19s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 56s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
113s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 28s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 61s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 85s
Write results 87s
380s
Quality check 12s
/var/lib/condor/execute/dir_1149332/ds/sub-228373/report/catreport_sub-228373_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 0 second(s).
Image Quality Rating (IQR): 86.75% (B+)
GM volume (GMV): 47.38% (621.98 / 1312.69 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/mri
Reports are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/report
Labels are saved in /var/lib/condor/execute/dir_1149332/ds/sub-228373/label
------------------------------------------------------------------------
22-Oct-2025 01:55:13 - Done 'CAT12: Segmentation'
22-Oct-2025 01:55:13 - Done
Bye for now...
get(ok): sourcedata/raw/sub-228373/anat/sub-228373_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-228373/label/catROI_sub-228373_acq-standard_T1w.mat (file)
unlock(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/m0wp1sub-228373_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/mwp1sub-228373_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/p0sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/p0sub-228373_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-228373/mri/wp0sub-228373_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-228373/mri/wp0sub-228373_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-228373/report/cat_sub-228373_acq-standard_T1w.mat (file)
unlock(ok): sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-228373/report/catreport_sub-228373_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1149332/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-228373/label/catROI_sub-228373_acq-headmotion1_T1w.mat (file)
add(ok): sub-228373/label/catROI_sub-228373_acq-headmotion1_T1w.xml (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-228373/mri/p0sub-228373_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/wp0sub-228373_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-228373/report/cat_sub-228373_acq-headmotion1_T1w.mat (file)
add(ok): sub-228373/report/cat_sub-228373_acq-headmotion1_T1w.xml (file)
add(ok): sub-228373/report/catlog_sub-228373_acq-headmotion1_T1w.txt (file)
add(ok): sub-228373/report/catreport_sub-228373_acq-headmotion1_T1w.pdf (file)
add(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.mat (file)
add(ok): sub-228373/label/catROI_sub-228373_acq-standard_T1w.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/m0wp1sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/mwp1sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/mri/p0sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/p0sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-228373/mri/wp0sub-228373_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-228373/mri/wp0sub-228373_acq-standard_T1w.nii.gz (file)
add(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.mat (file)
add(ok): sub-228373/report/cat_sub-228373_acq-standard_T1w.mat (file)
add(ok): sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf (file)
add(ok): sub-228373/report/catreport_sub-228373_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-228373/label/catROI_sub-228373_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/label/catROI_sub-228373_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/label/catROI_sub-228373_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/it_sub-228373_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/it_sub-228373_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/it_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/it_sub-228373_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/m0wp1sub-228373_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/m0wp1sub-228373_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/mwp1sub-228373_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/mwp1sub-228373_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/p0sub-228373_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/p0sub-228373_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/p0sub-228373_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/t_sub-228373_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/t_sub-228373_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/t_sub-228373_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/t_sub-228373_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/wp0sub-228373_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/wp0sub-228373_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/mri/wp0sub-228373_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-228373/report/cat_sub-228373_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/report/cat_sub-228373_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/report/cat_sub-228373_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-228373/report/catreport_sub-228373_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-228373/report/catreport_sub-228373_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-228373/report/catreport_sub-228373_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001041 seconds
flock: executing git
SUCCESS
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