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ds003011-mriqc/sub-03_ses-Y4CMP_task-rest_run-1_bold.html
Felix Hoffstaedter 0cf5b715d0 [DATALAD RUNCMD] Compute MRIQC for sub-03 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-03 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "da0c85a0-2b92-4a82-8e80-1dcfc88fc18a",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-03",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-11-04 04:59:59 +01:00

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<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="NiReports: https://www.nipreps.org/" />
<title>sub-03_ses-Y4CMP_task-rest_run-1_bold :: MRIQC's BOLD fMRI report</title>
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<script>
var timestamp = Date.now()
function read_form() {
var ds = "<unset>";
var sub = "sub-03_ses-Y4CMP_task-rest_run-1_bold.nii.gz";
var artifacts = [];
$('#qcartifacts-group input:checked').each(function() {
artifacts.push($(this).attr('name'));
});
var rating = $('#qcslider').val();
var payload = {
'dataset': ds,
'subject': sub,
'rating': rating,
'artifacts': artifacts,
'time_sec': (Date.now() - timestamp) / 1000,
'confidence': $('#qcextra-confidence').val(),
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$(window).on('load',function(){
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if (authorization.includes("secret_token")) {
$('#btn-post').addClass('d-none');
};
timestamp = Date.now();
});
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<style type="text/css">
/* The slider itself */
.slider {
-webkit-appearance: none; /* Override default CSS styles */
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transition: opacity .2s;
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/* Mouse-over effects */
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.slider::-webkit-slider-thumb {
-webkit-appearance: none;
appearance: none;
width: 25px;
height: 25px;
border: 0;
background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
cursor: pointer;
z-index: 2000 !important;
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</style>
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<body style="font-family: helvetica;">
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<ul class="navbar-nav me-auto mb-2 mb-lg-0">
<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
<li class="nav-item dropdown">
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About
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<li><a class="dropdown-item" href="#errors">Errors</a></li>
<li><a class="dropdown-item" href="#meta-about-metadata">Reproducibility and provenance information</a></li>
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</ul>
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</div>
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<noscript>
<h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
</noscript>
<div id="Basic echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-stdev_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-stdev_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-background_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-background_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-background_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-zoomed_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-zoomed_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-zoomed_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-carpet_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-carpet_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-carpet_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-carpet_bold.svg</a></small>
</div>
</div>
<div id="Extended echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-mean_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-mean_bold.svg</a></small>
</div>
</div>
<div id="Extended reports shared across echos" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
<div id="datatype-figures_desc-brainmask_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-brainmask_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-brainmask_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-brainmask_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-norm_run-1_session-Y4CMP_subject-03_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
<object class="svg-reportlet" type="image/svg+xml" data="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-norm_bold.svg" style="">
Problem loading figure sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
</div>
<small>Get figure file: <a href="./sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-norm_bold.svg" target="_blank">sub-03/figures/sub-03_ses-Y4CMP_task-rest_run-1_desc-norm_bold.svg</a></small>
</div>
</div>
<div id="About" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">About</h1>
<div id="errors" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
</div>
<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
reconstructing the provenance of the corresponding derivatives.
</p> <div class="accordion accordion-flush" id="about-metadata">
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-0">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
Provenance Information
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</h2>
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<div class="accordion-body metadata-table">
<table id="about-metadata-table-0" class="table table-sm table-striped">
<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-03/ses-Y4CMP/func/sub-03_ses-Y4CMP_task-rest_run-1_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>307512c4b4ce28e58ec64759e0b339b8</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-1">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
Dataset Information
</button>
</h2>
<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td>AcquisitionMatrixPE</td><td>64</td></tr>
<tr><td>AcquisitionNumber</td><td>1</td></tr>
<tr><td>AcquisitionTime</td><td>09:48:4.330000</td></tr>
<tr><td>BandwidthPerPixelPhaseEncode</td><td>63.776</td></tr>
<tr><td>BaseResolution</td><td>64</td></tr>
<tr><td>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td>CoilString</td><td>HC1-7;NC1_2</td></tr>
<tr><td>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td>ConversionSoftwareVersion</td><td>v1.0.20190410 (JP2:OpenJPEG) (JP-LS:CharLS) GCC5.5.0</td></tr>
<tr><td>DerivedVendorReportedEchoSpacing</td><td>0.000489996</td></tr>
<tr><td>DeviceSerialNumber</td><td>66108</td></tr>
<tr><td>DwellTime</td><td>3.2e-06</td></tr>
<tr><td>EchoTime</td><td>0.03</td></tr>
<tr><td>EchoTrainLength</td><td>31</td></tr>
<tr><td>EffectiveEchoSpacing</td><td>0.000244998</td></tr>
<tr><td>FlipAngle</td><td>77</td></tr>
<tr><td>ImageOrientationPatientDICOM</td><td>[0.998794, 0.0489022, -0.00444149, -0.0471019, 0.928593, -0.368098]</td></tr>
<tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td>ImagingFrequency</td><td>123.243</td></tr>
<tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td>InstitutionAddress</td><td>Huron_325_TORONTO_ONTARIO_CA_M5S_3G3</td></tr>
<tr><td>InstitutionName</td><td>University_of_Toronto</td></tr>
<tr><td>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td>MRAcquisitionType</td><td>2D</td></tr>
<tr><td>MagneticFieldStrength</td><td>3</td></tr>
<tr><td>Manufacturer</td><td>Siemens</td></tr>
<tr><td>ManufacturersModelName</td><td>Prisma</td></tr>
<tr><td>Modality</td><td>MR</td></tr>
<tr><td>ParallelReductionFactorInPlane</td><td>2</td></tr>
<tr><td>PartialFourier</td><td>1</td></tr>
<tr><td>PatientPosition</td><td>HFS</td></tr>
<tr><td>PercentPhaseFOV</td><td>100</td></tr>
<tr><td>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td>PhaseEncodingSteps</td><td>63</td></tr>
<tr><td>PhaseResolution</td><td>1</td></tr>
<tr><td>PixelBandwidth</td><td>2440</td></tr>
<tr><td>ProcedureStepDescription</td><td>Voineskos_Colin</td></tr>
<tr><td>ProtocolName</td><td>EPI_3x3x4xTR2-Resting_EyeClosed</td></tr>
<tr><td>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td>ReceiveCoilActiveElements</td><td>HC1-7;NC1,2</td></tr>
<tr><td>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td>ReconMatrixPE</td><td>64</td></tr>
<tr><td>RefLinesPE</td><td>30</td></tr>
<tr><td>RepetitionTime</td><td>2</td></tr>
<tr><td>SAR</td><td>0.106104</td></tr>
<tr><td>ScanOptions</td><td>FS</td></tr>
<tr><td>ScanningSequence</td><td>EP</td></tr>
<tr><td>SequenceName</td><td>_epfid2d1_64</td></tr>
<tr><td>SequenceVariant</td><td>SK</td></tr>
<tr><td>SeriesDescription</td><td>EPI_3x3x4xTR2-Resting_EyeClosed</td></tr>
<tr><td>SeriesNumber</td><td>6</td></tr>
<tr><td>ShimSetting</td><td>[-1044, -6898, -6360, 298, -105, 58, -146, -47]</td></tr>
<tr><td>SliceThickness</td><td>4</td></tr>
<tr><td>SliceTiming</td><td>[0, 1.015, 0.0525, 1.07, 0.1075, 1.1225, 0.16, 1.1775, 0.2125, 1.23, 0.2675, 1.2825, 0.32, 1.3375, 0.375, 1.39, 0.4275, 1.445, 0.48, 1.4975, 0.535, 1.5525, 0.5875, 1.605, 0.6425, 1.6575, 0.695, 1.7125, 0.7475, 1.765, 0.8025, 1.82, 0.855, 1.8725, 0.91, 1.925, 0.9625]</td></tr>
<tr><td>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td>SpacingBetweenSlices</td><td>4</td></tr>
<tr><td>StationName</td><td>AWP66108</td></tr>
<tr><td>TotalReadoutTime</td><td>0.0154349</td></tr>
<tr><td>TxRefAmp</td><td>275.601</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
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</h2>
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<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0008634905660377358</td></tr>
<tr><td colspan=3>aqi</td><td>0.0027048055047169807</td></tr>
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>22.838741483270137</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.1657506846919432</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9977487472985784</td></tr>
<tr><td colspan=3>efc</td><td>0.5542</td></tr>
<tr><td colspan=3>fber</td><td>411.5094</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.1890771914666274</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>97</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>45.75471698113208</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.5609116666666663</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.452608</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.802752</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.427375</td></tr>
<tr><td colspan=3>gcor</td><td>0.0159098</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>0.007250606082379818</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.09174645692110062</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>212</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>64</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>64</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>37</td></tr>
<tr><td colspan=3>snr</td><td>1.768075186132281</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>2.0</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>3.125</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>3.125</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>4.0</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>47.4062</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>10.9237</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>93.253</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>36.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>108469.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>27.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>371.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>175.59</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>1.2895</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>377.0915</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>809.309</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>739.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>43083.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>255.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1598.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>417.9638</td></tr>
<tr><td colspan=3>tsnr</td><td>72.6300285058096</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
<div class="card-header m-0">
Rating widget
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
</div>
<div class="card-body">
<div class="accordion">
<div class="accordion-item">
<h2 class="accordion-header" id="qcslider-head">
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
</h2>
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
<div class="accordion-body">
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
</ul>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="qcartifacts-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
Record specific artifacts
</button>
</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>
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