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Felix Hoffstaedter 0c464c7f15 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv",
 "dsid": "da0c85a0-2b92-4a82-8e80-1dcfc88fc18a",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-11-04 05:08:46 +01:00
.bids_db [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2025-11-03 22:52:47 +01:00
code SLURM submission setup 2025-11-03 22:52:57 +01:00
logs [DATALAD RUNCMD] run MRIQC classifier 2025-11-04 05:08:46 +01:00
sourcedata Register ds003011 BIDS dataset as input 2025-11-03 22:52:52 +01:00
sub-01 [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-02 [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-03 [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-04 [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
.bidsignore [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
.gitattributes keep .bidsignore, dataset_description.json & tsv files in git 2025-11-03 22:52:38 +01:00
.gitignore SLURM submission setup 2025-11-03 22:52:57 +01:00
.gitmodules Register ds003011 BIDS dataset as input 2025-11-03 22:52:52 +01:00
CHANGELOG.md Apply YODA dataset setup 2025-11-03 22:52:37 +01:00
dataset_description.json [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
group_dwi.html [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
group_dwi.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2025-11-04 05:07:15 +01:00
mclf_run-20251104-040845_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2025-11-04 05:08:46 +01:00
README.md Apply YODA dataset setup 2025-11-03 22:52:37 +01:00
sub-01_ses-Y1CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1MRC_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1MRC_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1MRC_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1MRC_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1MRC_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1ZHH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1ZHH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y1ZHH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2MRC_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2MRC_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2MRC_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2MRC_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2MRC_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2ZHH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2ZHH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-01_ses-Y2ZHH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-01 2025-11-04 02:31:43 +01:00
sub-02_ses-Y3CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3MRP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3MRP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3MRP_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3MRP_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3MRP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3ZHP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3ZHP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y3ZHP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y4CMP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y4CMP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-02_ses-Y4CMP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-02 2025-11-04 01:19:52 +01:00
sub-03_ses-Y1CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1MRC_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1MRC_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1MRC_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1MRC_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1MRC_run-4_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1MRC_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1ZHH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1ZHH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y1ZHH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2MRC_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2MRC_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2MRC_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2MRC_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2ZHH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2ZHH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y2ZHH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3MRP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3MRP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3MRP_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3MRP_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3MRP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3ZHP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3ZHP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y3ZHP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y4CMP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y4CMP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y4CMP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-03_ses-Y4CMP_task-rest_run-2_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-03 2025-11-04 04:59:59 +01:00
sub-04_ses-Y1CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1MRC_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1MRC_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1MRC_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1MRC_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1MRC_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1ZHH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1ZHH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y1ZHH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2MRC_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2MRC_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2MRC_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2MRC_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2ZHH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2ZHH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y2ZHH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3CMH_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3CMH_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3CMH_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3MRP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3MRP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3MRP_run-2_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3MRP_run-3_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3MRP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3ZHP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3ZHP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y3ZHP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y4CMP_run-1_dwi.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y4CMP_run-1_T1w.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00
sub-04_ses-Y4CMP_task-rest_run-1_bold.html [DATALAD RUNCMD] Compute MRIQC for sub-04 2025-11-04 04:49:33 +01:00

README.md

Project

Dataset structure

  • All inputs (i.e. building blocks from other sources) are located in inputs/.
  • All custom code is located in code/.