openneuro-mriqc24.0.2/ds005518
Watch
2
0
Fork
You've already forked ds005518
 0
Code Activity
No description
118 commits 52 branches 0 tags 1.3 GiB
  • HTML 99.7%
  • Shell 0.3%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter 32414cc12c [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "e7fe5595-27f9-4627-a7b1-01f3f436d71a",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-03-27 02:49:12 +01:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-03-27 00:59:11 +01:00
code SLURM submission setup 2026-03-27 00:59:23 +01:00
duct-logs Merge results 2026-03-27 02:45:11 +01:00
sourcedata Register ds005518 BIDS dataset as input 2026-03-27 00:59:18 +01:00
sub-1 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-2 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-3 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-4 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-5 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-6 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-7 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-8 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-9 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-10 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-11 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-12 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-13 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-14 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-15 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-16 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-17 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-18 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-19 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-20 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-21 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-22 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-23 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-24 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-25 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-26 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-27 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-28 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-29 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-30 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-31 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-32 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-33 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-34 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-35 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-36 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-37 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-38 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-39 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-40 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-41 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-42 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-43 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-44 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-45 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-46 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-47 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-48 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-49 move data to dataset root 2026-03-27 02:45:38 +01:00
sub-50 move data to dataset root 2026-03-27 02:45:38 +01:00
.bidsignore move data to dataset root 2026-03-27 02:45:38 +01:00
.gitattributes keep non-binary files in git 2026-03-27 00:59:01 +01:00
.gitignore SLURM submission setup 2026-03-27 00:59:23 +01:00
.gitmodules Register ds005518 BIDS dataset as input 2026-03-27 00:59:18 +01:00
CHANGELOG.md Apply YODA dataset setup 2026-03-27 00:59:00 +01:00
dataset_description.json move data to dataset root 2026-03-27 02:45:38 +01:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 02:48:50 +01:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 02:48:50 +01:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 02:48:50 +01:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 02:48:50 +01:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-03-27 02:49:12 +01:00
README.md add README with Acknowledgements 2026-03-27 00:59:02 +01:00
sub-1_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-1_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-2_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-2_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-3_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-3_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-4_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-4_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-5_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-5_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-6_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-6_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-7_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-7_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-8_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-8_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-9_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-9_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-10_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-10_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-11_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-11_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-12_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-12_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-13_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-13_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-14_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-14_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-15_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-15_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-16_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-16_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-17_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-17_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-18_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-18_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-19_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-19_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-20_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-20_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-21_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-21_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-22_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-22_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-23_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-23_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-24_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-24_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-25_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-25_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-26_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-26_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-27_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-27_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-28_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-28_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-29_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-29_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-30_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-30_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-31_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-31_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-32_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-32_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-33_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-33_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-34_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-34_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-35_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-35_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-36_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-36_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-37_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-37_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-38_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-38_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-39_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-39_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-40_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-40_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-41_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-41_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-42_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-42_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-43_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-43_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-44_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-44_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-45_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-45_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-46_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-46_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-47_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-47_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-48_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-48_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-49_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-49_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-50_T1w.html move data to dataset root 2026-03-27 02:45:38 +01:00
sub-50_task-narrative_bold.html move data to dataset root 2026-03-27 02:45:38 +01:00

README.md

ds005518 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds005518.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).