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Felix Hoffstaedter 28970b7a59 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv",
 "dsid": "940ce7d1-75b8-413e-a1a9-b3bc627c475c",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-03-19 23:29:28 +01:00
.bids_db [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-19 23:29:00 +01:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-02-21 00:28:49 +01:00
code [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-19 23:29:00 +01:00
duct-logs [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sourcedata Register ds005115 BIDS dataset as input 2026-02-21 00:28:58 +01:00
sub-01 [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
.bidsignore [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
.gitattributes keep .bidsignore, dataset_description.json & tsv files in git 2026-02-21 00:28:35 +01:00
.gitignore SLURM submission setup 2026-02-21 00:29:03 +01:00
.gitmodules Register ds005115 BIDS dataset as input 2026-02-21 00:28:58 +01:00
CHANGELOG.md Apply YODA dataset setup 2026-02-21 00:28:34 +01:00
dataset_description.json [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-19 23:29:00 +01:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-19 23:29:00 +01:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-19 23:29:00 +01:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-19 23:29:00 +01:00
mclf_run-20260319-222927_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-03-19 23:29:28 +01:00
README.md Apply YODA dataset setup 2026-02-21 00:28:34 +01:00
sub-01_ses-01_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-01_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-02_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-02_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-03_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-03_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-04_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-04_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-05_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-05_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-06_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-06_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-07_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-07_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-08_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-08_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-09_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-09_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-10_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-10_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-11_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-11_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-12_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-12_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-13_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-13_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-14_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-14_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-15_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-15_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-16_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-16_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-17_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-17_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-18_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-18_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-19_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-19_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-20_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-20_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-21_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-21_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-22_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-22_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-23_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-23_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-24_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-24_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-25_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-25_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-26_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-26_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-27_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-27_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-28_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-28_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-29_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-29_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-30_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-30_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-31_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-31_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-32_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-32_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-33_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-33_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-34_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-34_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-35_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-35_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-36_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-36_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-37_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-37_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-38_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-38_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-39_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-39_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00
sub-01_ses-40_T1w.html [DATALAD RUNCMD] Compute MRIQC for T1w of sub-01 2026-02-23 10:46:45 +01:00
sub-01_ses-40_task-rest_bold.html [DATALAD RUNCMD] Compute MRIQC for BOLD of sub-01 2026-02-23 18:30:35 +01:00

README.md

Project

Dataset structure

  • All inputs (i.e. building blocks from other sources) are located in inputs/.
  • All custom code is located in code/.