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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8032_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8032/figures/sub-8032_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8032/ses-01/func/sub-8032_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>c9eb0e413d66ef84001d014d6a806b8b</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>15:30:0.760000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.994355, -0.050014, 0.0935787, 0.049328, 0.998736, 0.00963087]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0457339</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1756, -9107, 4339, 527, -159, -232, 72, 26]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>219.483</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3841917514801025, 0.1182750016450882, 0.22546109557151794, 98.29522705078125], [0.11991982161998749, 2.3946969509124756, 0.011905092746019363, -102.90770721435547], [0.22437623143196106, -0.023092199116945267, 2.3893566131591797, -83.09690856933594], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['153000.760000', '153001.960000', '153003.160000', '153004.360000', '153005.560000', '153006.760000', '153007.960000', '153009.160000', '153010.360000', '153011.560000', '153012.760000', '153013.960000', '153015.160000', '153016.360000', '153017.560000', '153018.760000', '153019.960000', '153021.160000', '153022.360000', '153023.560000', '153024.760000', '153025.960000', '153027.160000', '153028.360000', '153029.560000', '153030.760000', '153031.960000', '153033.160000', '153034.360000', '153035.560000', '153036.760000', '153037.960000', '153039.160000', '153040.360000', '153041.560000', '153042.760000', '153043.960000', '153045.160000', '153046.360000', '153047.560000', '153048.760000', '153049.960000', '153051.160000', '153052.360000', '153053.560000', '153054.760000', '153055.960000', '153057.160000', '153058.360000', '153059.560000', '153100.760000', '153101.960000', '153103.160000', '153104.360000', '153105.560000', '153106.760000', '153107.960000', '153109.160000', '153110.360000', '153111.560000', '153112.760000', '153113.960000', '153115.160000', '153116.360000', '153117.560000', '153118.760000', '153119.960000', '153121.160000', '153122.360000', '153123.560000', '153124.760000', '153125.960000', '153127.160000', '153128.360000', '153129.560000', '153130.760000', '153131.960000', '153133.160000', '153134.360000', '153135.560000', '153136.760000', '153137.960000', '153139.160000', '153140.360000', '153141.560000', '153142.760000', '153143.960000', '153145.160000', '153146.360000', '153147.560000', '153148.760000', '153149.960000', '153151.160000', '153152.360000', '153153.560000', '153154.760000', '153155.960000', '153157.160000', '153158.360000', '153159.560000', '153200.760000', '153201.960000', '153203.160000', '153204.360000', '153205.560000', '153206.760000', '153207.960000', '153209.160000', '153210.360000', '153211.560000', '153212.760000', '153213.960000', '153215.160000', '153216.360000', '153217.560000', '153218.760000', '153219.960000', '153221.160000', '153222.360000', '153223.560000', '153224.760000', '153225.960000', '153227.160000', '153228.360000', '153229.560000'], 'ContentTime': ['153035.559000', '153035.570000', '153035.573000', '153035.575000', '153035.578000', '153035.580000', '153035.583000', '153035.596000', '153035.599000', '153035.602000', '153035.605000', '153035.607000', '153035.610000', '153035.613000', '153035.615000', '153035.618000', '153035.620000', '153035.623000', '153035.625000', '153035.628000', '153035.630000', '153035.633000', '153035.635000', '153035.638000', '153035.640000', '153035.643000', '153035.646000', '153035.648000', '153115.554000', '153115.557000', '153115.560000', '153115.563000', '153115.565000', '153115.568000', '153115.570000', '153115.573000', '153115.576000', '153115.579000', '153115.581000', '153115.584000', '153115.587000', '153115.589000', '153115.601000', '153115.604000', '153115.606000', '153115.609000', '153115.611000', '153115.614000', '153115.616000', '153115.619000', '153115.621000', '153115.624000', '153115.643000', '153115.646000', '153115.648000', '153115.651000', '153115.653000', '153115.656000', '153115.658000', '153115.661000', '153115.663000', '153135.554000', '153135.557000', '153135.563000', '153135.565000', '153135.568000', '153135.570000', '153135.573000', '153135.576000', '153135.578000', '153135.581000', '153135.583000', '153135.586000', '153135.588000', '153135.591000', '153135.598000', '153135.601000', '153135.604000', '153215.555000', '153215.557000', '153215.560000', '153215.562000', '153215.565000', '153215.568000', '153215.570000', '153215.573000', '153215.575000', '153215.578000', '153215.580000', '153215.583000', '153215.585000', '153215.588000', '153215.591000', '153215.593000', '153215.596000', '153215.598000', '153215.601000', '153215.603000', '153215.606000', '153215.608000', '153215.611000', '153215.614000', '153215.616000', '153215.619000', '153215.622000', '153215.635000', '153215.637000', '153215.640000', '153215.643000', '153215.645000', '153215.648000', '153231.226000', '153231.229000', '153231.232000', '153231.235000', '153231.237000', '153231.240000', '153231.243000', '153231.245000', '153231.248000', '153231.250000', '153231.253000', '153231.256000', '153231.258000', '153231.261000'], 'InstanceCreationTime': ['153035.559000', '153035.570000', '153035.573000', '153035.575000', '153035.578000', '153035.580000', '153035.583000', '153035.596000', '153035.599000', '153035.602000', '153035.605000', '153035.607000', '153035.610000', '153035.613000', '153035.615000', '153035.618000', '153035.620000', '153035.623000', '153035.625000', '153035.628000', '153035.630000', '153035.633000', '153035.635000', '153035.638000', '153035.640000', '153035.643000', '153035.646000', '153035.648000', '153115.554000', '153115.557000', '153115.560000', '153115.563000', '153115.565000', '153115.568000', '153115.570000', '153115.573000', '153115.576000', '153115.579000', '153115.581000', '153115.584000', '153115.587000', '153115.589000', '153115.601000', '153115.604000', '153115.606000', '153115.609000', '153115.611000', '153115.614000', '153115.616000', '153115.619000', '153115.621000', '153115.624000', '153115.643000', '153115.646000', '153115.648000', '153115.651000', '153115.653000', '153115.656000', '153115.658000', '153115.661000', '153115.663000', '153135.554000', '153135.557000', '153135.563000', '153135.565000', '153135.568000', '153135.570000', '153135.573000', '153135.576000', '153135.578000', '153135.581000', '153135.583000', '153135.586000', '153135.588000', '153135.591000', '153135.598000', '153135.601000', '153135.604000', '153215.555000', '153215.557000', '153215.560000', '153215.562000', '153215.565000', '153215.568000', '153215.570000', '153215.573000', '153215.575000', '153215.578000', '153215.580000', '153215.583000', '153215.585000', '153215.588000', '153215.591000', '153215.593000', '153215.596000', '153215.598000', '153215.601000', '153215.603000', '153215.606000', '153215.608000', '153215.611000', '153215.614000', '153215.616000', '153215.619000', '153215.622000', '153215.635000', '153215.637000', '153215.640000', '153215.643000', '153215.645000', '153215.648000', '153231.226000', '153231.229000', '153231.232000', '153231.235000', '153231.237000', '153231.240000', '153231.243000', '153231.245000', '153231.248000', '153231.250000', '153231.253000', '153231.256000', '153231.258000', '153231.261000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2128, 2062, 2033, 2022, 1999, 1986, 1981, 1971, 1973, 1973, 1978, 1983, 1973, 1993, 1984, 1976, 1967, 1991, 1987, 1982, 1992, 1981, 1981, 1985, 1981, 1983, 1979, 1966, 1970, 1966, 1972, 1972, 1957, 1957, 1974, 1968, 1967, 1968, 1969, 1980, 1966, 1979, 1968, 1958, 1973, 1956, 1954, 1964, 1969, 1973, 1972, 1967, 1961, 1955, 1969, 1971, 1976, 1961, 1974, 1973, 1978, 1949, 1969, 1973, 1973, 1978, 1973, 1979, 1982, 1983, 1970, 1962, 1970, 1975, 1978, 1953, 1976, 1960, 1966, 1966, 1959, 1969, 1963, 1980, 1962, 1961, 1961, 1983, 1968, 1970, 1956, 1967, 1971, 1960, 1977, 1973, 1970, 1978, 1961, 1972, 1983, 1969, 1973, 1977, 1963, 1977, 1970, 1978, 1984, 1977, 1973, 1972, 1966, 1974, 1965, 1963, 1988, 1967, 1981, 1982, 1966, 1972, 1971, 1955, 1964], 'WindowCenter': [596.0, 593.0, 592.0, 593.0, 594.0, 593.0, 593.0, 593.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 593.0, 592.0, 593.0, 593.0, 594.0, 593.0, 593.0, 593.0, 594.0, 594.0, 593.0, 593.0, 592.0, 593.0, 593.0, 594.0, 596.0, 596.0, 595.0, 595.0, 594.0, 594.0, 593.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 595.0, 595.0, 595.0, 596.0, 597.0, 597.0, 596.0, 595.0, 595.0, 593.0, 592.0, 592.0, 593.0, 593.0, 593.0, 594.0, 594.0, 594.0, 593.0, 593.0, 592.0, 593.0, 593.0, 592.0, 593.0, 593.0, 594.0, 594.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 594.0, 593.0, 593.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 595.0, 595.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 594.0, 594.0, 593.0, 594.0, 593.0, 593.0, 593.0, 593.0, 593.0, 593.0, 593.0, 593.0], 'WindowWidth': [1272.0, 1265.0, 1262.0, 1265.0, 1266.0, 1264.0, 1264.0, 1264.0, 1262.0, 1262.0, 1261.0, 1262.0, 1261.0, 1262.0, 1263.0, 1262.0, 1262.0, 1263.0, 1262.0, 1264.0, 1265.0, 1266.0, 1265.0, 1264.0, 1265.0, 1266.0, 1265.0, 1265.0, 1264.0, 1262.0, 1263.0, 1264.0, 1267.0, 1270.0, 1271.0, 1270.0, 1268.0, 1266.0, 1266.0, 1265.0, 1266.0, 1267.0, 1267.0, 1267.0, 1267.0, 1267.0, 1266.0, 1266.0, 1266.0, 1266.0, 1267.0, 1266.0, 1267.0, 1267.0, 1267.0, 1268.0, 1268.0, 1270.0, 1272.0, 1273.0, 1274.0, 1271.0, 1268.0, 1267.0, 1265.0, 1263.0, 1263.0, 1264.0, 1264.0, 1265.0, 1267.0, 1267.0, 1267.0, 1264.0, 1263.0, 1263.0, 1263.0, 1263.0, 1262.0, 1263.0, 1265.0, 1266.0, 1266.0, 1267.0, 1268.0, 1266.0, 1265.0, 1264.0, 1265.0, 1266.0, 1264.0, 1264.0, 1267.0, 1267.0, 1266.0, 1265.0, 1265.0, 1264.0, 1263.0, 1264.0, 1265.0, 1268.0, 1268.0, 1269.0, 1267.0, 1266.0, 1266.0, 1264.0, 1263.0, 1264.0, 1265.0, 1267.0, 1266.0, 1266.0, 1266.0, 1265.0, 1265.0, 1264.0, 1264.0, 1264.0, 1263.0, 1265.0, 1264.0, 1264.0, 1265.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.001418</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0029130044</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>30.13415379685483</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1791796279838713</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0197210487096777</td></tr>
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<tr><td colspan=3>efc</td><td>0.536</td></tr>
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<tr><td colspan=3>fber</td><td>632.8722</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.09148328636233413</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>0</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>0.0</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.2301610870159596</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.111342208219973</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.220262019631101</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.3588790331968057</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0136954</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.02843993343412876</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.09396523982286453</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>125</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.1164298106527046</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>32.9049</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>10.3426</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>57.2953</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>21.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>354783.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>244.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>100.6624</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>1.0858</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>216.4837</td></tr>
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|
<tr><td>summary</td><td>fg</td><td>mean</td><td>560.7185</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>528.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>109857.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>180.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1019.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>249.4756</td></tr>
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<tr><td colspan=3>tsnr</td><td>59.0545511583332</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |