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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-02_session-01_subject-8031_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" style="">
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Problem loading figure sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" target="_blank">sub-8031/figures/sub-8031_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8031/ses-01/func/sub-8031_ses-01_task-RDMmotion_run-02_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>c5cbb277bcfbcb392abef2c74cbf7739</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>16:48:38.057500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.991393, 0.130702, -0.00758271, -0.130695, 0.984605, -0.116068]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-02</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0554916</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-02</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>9</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1733, -9087, 4434, 489, -163, -427, 55, -24]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>227.908</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.377089262008667, -0.3133717179298401, 0.018490636721253395, 117.16777801513672], [-0.31338879466056824, 2.360814094543457, -0.2785446047782898, -75.1617431640625], [-0.018181268125772476, 0.27830004692077637, 2.38370943069458, -78.72169494628906], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['164838.057500', '164839.257500', '164840.457500', '164841.657500', '164842.857500', '164844.057500', '164845.257500', '164846.457500', '164847.657500', '164848.857500', '164850.057500', '164851.257500', '164852.457500', '164853.657500', '164854.857500', '164856.057500', '164857.257500', '164858.457500', '164859.657500', '164900.857500', '164902.057500', '164903.257500', '164904.457500', '164905.657500', '164906.857500', '164908.057500', '164909.257500', '164910.457500', '164911.657500', '164912.857500', '164914.057500', '164915.257500', '164916.457500', '164917.657500', '164918.857500', '164920.057500', '164921.257500', '164922.457500', '164923.657500', '164924.857500', '164926.057500', '164927.257500', '164928.457500', '164929.657500', '164930.857500', '164932.057500', '164933.257500', '164934.457500', '164935.657500', '164936.857500', '164938.057500', '164939.257500', '164940.457500', '164941.657500', '164942.857500', '164944.057500', '164945.257500', '164946.457500', '164947.657500', '164948.857500', '164950.057500', '164951.257500', '164952.457500', '164953.657500', '164954.857500', '164956.057500', '164957.257500', '164958.457500', '164959.657500', '165000.857500', '165002.057500', '165003.257500', '165004.457500', '165005.657500', '165006.857500', '165008.057500', '165009.257500', '165010.457500', '165011.657500', '165012.857500', '165014.057500', '165015.257500', '165016.457500', '165017.657500', '165018.857500', '165020.057500', '165021.257500', '165022.457500', '165023.657500', '165024.857500', '165026.057500', '165027.257500', '165028.457500', '165029.657500', '165030.857500', '165032.057500', '165033.257500', '165034.457500', '165035.657500', '165036.857500', '165038.057500', '165039.257500', '165040.457500', '165041.657500', '165042.857500', '165044.057500', '165045.257500', '165046.457500', '165047.657500', '165048.857500', '165050.057500', '165051.257500', '165052.457500', '165053.657500', '165054.857500', '165056.057500', '165057.257500', '165058.457500', '165059.657500', '165100.857500', '165102.057500', '165103.257500', '165104.457500', '165105.657500', '165106.857500'], 'ContentTime': ['164903.211000', '164903.214000', '164903.217000', '164903.219000', '164903.222000', '164903.224000', '164903.228000', '164903.230000', '164903.233000', '164903.236000', '164903.238000', '164903.241000', '164903.243000', '164903.246000', '164903.248000', '164903.255000', '164903.258000', '164903.261000', '164903.263000', '164903.266000', '164943.206000', '164943.209000', '164943.212000', '164943.215000', '164943.217000', '164943.220000', '164943.223000', '164943.225000', '164943.228000', '164943.230000', '164943.233000', '164943.235000', '164943.238000', '164943.241000', '164943.243000', '164943.246000', '164943.248000', '164943.251000', '164943.253000', '164943.256000', '164943.258000', '164943.261000', '164943.264000', '164943.266000', '164943.269000', '164943.271000', '164943.274000', '164943.276000', '164943.279000', '164943.281000', '164943.284000', '164943.288000', '164943.290000', '165023.206000', '165023.209000', '165023.212000', '165023.214000', '165023.217000', '165023.220000', '165023.222000', '165023.225000', '165023.228000', '165023.230000', '165023.233000', '165023.235000', '165023.238000', '165023.240000', '165023.243000', '165023.245000', '165023.248000', '165023.251000', '165023.253000', '165023.256000', '165023.258000', '165023.261000', '165023.263000', '165023.266000', '165023.268000', '165023.289000', '165023.292000', '165023.294000', '165023.297000', '165023.299000', '165023.302000', '165023.304000', '165023.307000', '165023.310000', '165103.207000', '165103.210000', '165103.213000', '165103.215000', '165103.218000', '165103.220000', '165103.223000', '165103.226000', '165103.229000', '165103.232000', '165103.234000', '165103.237000', '165103.240000', '165103.242000', '165103.245000', '165103.247000', '165103.254000', '165103.257000', '165103.260000', '165103.262000', '165103.265000', '165103.267000', '165103.270000', '165103.272000', '165103.275000', '165103.278000', '165103.280000', '165103.283000', '165103.285000', '165103.288000', '165103.291000', '165103.293000', '165103.296000', '165108.444000', '165108.448000', '165108.450000', '165108.453000', '165108.456000'], 'InstanceCreationTime': ['164903.211000', '164903.214000', '164903.217000', '164903.219000', '164903.222000', '164903.224000', '164903.228000', '164903.230000', '164903.233000', '164903.236000', '164903.238000', '164903.241000', '164903.243000', '164903.246000', '164903.248000', '164903.255000', '164903.258000', '164903.261000', '164903.263000', '164903.266000', '164943.206000', '164943.209000', '164943.212000', '164943.215000', '164943.217000', '164943.220000', '164943.223000', '164943.225000', '164943.228000', '164943.230000', '164943.233000', '164943.235000', '164943.238000', '164943.241000', '164943.243000', '164943.246000', '164943.248000', '164943.251000', '164943.253000', '164943.256000', '164943.258000', '164943.261000', '164943.264000', '164943.266000', '164943.269000', '164943.271000', '164943.274000', '164943.276000', '164943.279000', '164943.281000', '164943.284000', '164943.288000', '164943.290000', '165023.206000', '165023.209000', '165023.212000', '165023.214000', '165023.217000', '165023.220000', '165023.222000', '165023.225000', '165023.228000', '165023.230000', '165023.233000', '165023.235000', '165023.238000', '165023.240000', '165023.243000', '165023.245000', '165023.248000', '165023.251000', '165023.253000', '165023.256000', '165023.258000', '165023.261000', '165023.263000', '165023.266000', '165023.268000', '165023.289000', '165023.292000', '165023.294000', '165023.297000', '165023.299000', '165023.302000', '165023.304000', '165023.307000', '165023.310000', '165103.207000', '165103.210000', '165103.213000', '165103.215000', '165103.218000', '165103.220000', '165103.223000', '165103.226000', '165103.229000', '165103.232000', '165103.234000', '165103.237000', '165103.240000', '165103.242000', '165103.245000', '165103.247000', '165103.254000', '165103.257000', '165103.260000', '165103.262000', '165103.265000', '165103.267000', '165103.270000', '165103.272000', '165103.275000', '165103.278000', '165103.280000', '165103.283000', '165103.285000', '165103.288000', '165103.291000', '165103.293000', '165103.296000', '165108.444000', '165108.448000', '165108.450000', '165108.453000', '165108.456000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1791, 1738, 1717, 1688, 1700, 1689, 1701, 1691, 1686, 1674, 1720, 1682, 1703, 1681, 1688, 1694, 1672, 1710, 1659, 1711, 1697, 1687, 1718, 1673, 1685, 1685, 1676, 1696, 1668, 1677, 1700, 1667, 1688, 1696, 1680, 1725, 1686, 1722, 1684, 1701, 1672, 1683, 1705, 1714, 1674, 1704, 1670, 1672, 1689, 1674, 1706, 1667, 1693, 1683, 1687, 1681, 1697, 1664, 1708, 1693, 1687, 1680, 1685, 1694, 1690, 1701, 1686, 1676, 1688, 1675, 1692, 1673, 1699, 1670, 1675, 1696, 1687, 1695, 1688, 1696, 1669, 1689, 1688, 1694, 1686, 1703, 1708, 1716, 1706, 1711, 1680, 1703, 1674, 1708, 1702, 1660, 1698, 1669, 1664, 1702, 1722, 1713, 1673, 1682, 1701, 1695, 1717, 1697, 1695, 1719, 1698, 1711, 1702, 1685, 1679, 1698, 1661, 1687, 1687, 1703, 1703, 1685, 1699, 1678, 1676], 'WindowCenter': [563.0, 560.0, 559.0, 557.0, 559.0, 558.0, 559.0, 559.0, 557.0, 556.0, 556.0, 555.0, 556.0, 556.0, 557.0, 557.0, 557.0, 557.0, 555.0, 557.0, 556.0, 557.0, 557.0, 557.0, 558.0, 559.0, 559.0, 559.0, 558.0, 557.0, 558.0, 558.0, 558.0, 557.0, 556.0, 555.0, 554.0, 555.0, 554.0, 555.0, 556.0, 556.0, 557.0, 558.0, 557.0, 557.0, 556.0, 556.0, 555.0, 556.0, 558.0, 558.0, 558.0, 557.0, 557.0, 557.0, 558.0, 557.0, 557.0, 558.0, 558.0, 557.0, 557.0, 558.0, 558.0, 559.0, 556.0, 556.0, 556.0, 557.0, 556.0, 555.0, 556.0, 555.0, 555.0, 555.0, 556.0, 557.0, 557.0, 558.0, 556.0, 556.0, 555.0, 557.0, 558.0, 560.0, 558.0, 558.0, 557.0, 556.0, 555.0, 555.0, 556.0, 557.0, 557.0, 557.0, 558.0, 555.0, 555.0, 555.0, 556.0, 557.0, 555.0, 554.0, 552.0, 549.0, 549.0, 548.0, 548.0, 549.0, 550.0, 553.0, 555.0, 556.0, 556.0, 558.0, 557.0, 556.0, 555.0, 556.0, 557.0, 558.0, 558.0, 557.0, 557.0], 'WindowWidth': [1199.0, 1191.0, 1189.0, 1186.0, 1189.0, 1188.0, 1190.0, 1189.0, 1185.0, 1183.0, 1183.0, 1182.0, 1183.0, 1183.0, 1186.0, 1186.0, 1185.0, 1184.0, 1181.0, 1184.0, 1184.0, 1185.0, 1185.0, 1186.0, 1189.0, 1191.0, 1191.0, 1190.0, 1187.0, 1185.0, 1187.0, 1187.0, 1187.0, 1185.0, 1183.0, 1181.0, 1179.0, 1180.0, 1179.0, 1182.0, 1183.0, 1184.0, 1186.0, 1188.0, 1186.0, 1186.0, 1183.0, 1184.0, 1182.0, 1184.0, 1187.0, 1187.0, 1187.0, 1186.0, 1186.0, 1186.0, 1187.0, 1186.0, 1186.0, 1187.0, 1188.0, 1185.0, 1186.0, 1189.0, 1188.0, 1189.0, 1184.0, 1183.0, 1184.0, 1185.0, 1183.0, 1180.0, 1182.0, 1180.0, 1181.0, 1181.0, 1183.0, 1186.0, 1186.0, 1187.0, 1184.0, 1183.0, 1182.0, 1186.0, 1189.0, 1192.0, 1188.0, 1187.0, 1185.0, 1182.0, 1182.0, 1182.0, 1183.0, 1185.0, 1185.0, 1186.0, 1187.0, 1182.0, 1181.0, 1181.0, 1181.0, 1183.0, 1180.0, 1180.0, 1174.0, 1168.0, 1167.0, 1165.0, 1166.0, 1167.0, 1170.0, 1177.0, 1181.0, 1184.0, 1185.0, 1188.0, 1186.0, 1182.0, 1181.0, 1184.0, 1186.0, 1187.0, 1187.0, 1186.0, 1186.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.004205967741935485</td></tr>
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<tr><td colspan=3>aqi</td><td>0.008511621935483871</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>41.585990751056904</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.2375590646341459</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0312252802439021</td></tr>
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<tr><td colspan=3>efc</td><td>0.4984</td></tr>
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<tr><td colspan=3>fber</td><td>832.2747</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.21873187641997388</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>57</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>45.96774193548387</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.127062786743986</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.0870608809862623</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.08272344018876</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.2114040390569354</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0339923</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.00423796521499753</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.0771779790520668</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.3385035764625433</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>43.5458</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>8.0706</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>44.1182</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>18.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>372148.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>171.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>79.2332</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.7711</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>191.2258</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>547.5743</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>519.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>92492.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>211.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>961.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>221.9356</td></tr>
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<tr><td colspan=3>tsnr</td><td>43.849191836081445</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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</h2>
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<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
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<div class="accordion-body">
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<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
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<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
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<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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</ul>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcartifacts-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
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Record specific artifacts
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</button>
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</h2>
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<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
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<div class="accordion-body">
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<fieldset id="qcartifacts-group" class="form-group">
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
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<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
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<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
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<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
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<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
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<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
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<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
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<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
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<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
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<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
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<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
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<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
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</div>
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</fieldset>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcextra-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
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Extra details
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</button>
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</h2>
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<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
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<div class="accordion-body">
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<div class="input-group">
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<span class="input-group-text">Comments</span>
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<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
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</div>
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<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
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<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
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<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
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</ul>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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</div>
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<div style="margin-top: 10px">
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<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
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<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
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</div>
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<script type="text/javascript">
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var MINIMUM_RATING_TIME = 10
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$('#qcslider').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 1.5 ) {
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$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
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} else if ( $(this).val() > 3.5 ) {
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$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
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} else if ( $(this).val() < 2.5 ) {
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$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-confidence').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 2.0 ) {
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$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-comments').bind('input propertychange', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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});
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$( '#btn-post' ).click( function() {
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var payload = read_form();
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var md5sum = "unspecified";
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var params = {
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'rating': payload['rating'],
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'md5sum': md5sum,
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'name': "",
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'comment': JSON.stringify(payload['artifacts'])
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};
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// disable development releases
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var authorization = $(this).val();
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var ratingReq = new XMLHttpRequest();
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ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
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ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
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ratingReq.setRequestHeader("Authorization", authorization);
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ratingReq.onload = function () {
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status = ratingReq.status;
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$('#btn-post').removeClass('btn-primary');
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$('#btn-post').attr('disabled', true);
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$('#btn-post').attr('aria-disabled', true);
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$('#btn-post').prop('disabled');
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$('#btn-post').addClass('disabled');
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$('#btn-post').removeClass('active');
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if (status === "201") {
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$('#btn-post').addClass('btn-success');
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$('#btn-post').html('Posted!');
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} else {
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$('#btn-post').addClass('btn-danger');
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$('#btn-post').html('Failed');
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};
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};
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ratingReq.send(JSON.stringify(params));
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});
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$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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var payload = read_form();
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});
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$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
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toggle_rating();
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});
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</script>
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</div>
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<script type="text/javascript">
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function toggle(id) {
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var element = document.getElementById(id);
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if(element.style.display == 'block')
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element.style.display = 'none';
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else
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element.style.display = 'block';
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}
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</script>
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</body>
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</html> |