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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-05_session-01_subject-8030_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" style="">
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Problem loading figure sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" target="_blank">sub-8030/figures/sub-8030_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8030/ses-01/func/sub-8030_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>af129529ae9e3b5924dd391c95e5b336</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>15:44:30.707500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999658, -0.00406811, 0.0258422, 0.0041874, 0.999981, -0.0045636]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0480101</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1768, -9114, 4433, 519, -29, -230, 4, 0]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>219.229</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.396906614303589, 0.010040231980383396, 0.06197550147771835, 104.0329818725586], [0.009754210710525513, 2.39768123626709, -0.01120859757065773, -100.57337951660156], [0.061962515115737915, 0.010942266322672367, 2.3991734981536865, -56.580989837646484], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['154430.707500', '154431.907500', '154433.107500', '154434.307500', '154435.507500', '154436.707500', '154437.907500', '154439.107500', '154440.307500', '154441.507500', '154442.707500', '154443.907500', '154445.107500', '154446.307500', '154447.507500', '154448.707500', '154449.907500', '154451.107500', '154452.307500', '154453.507500', '154454.707500', '154455.907500', '154457.107500', '154458.307500', '154459.507500', '154500.707500', '154501.907500', '154503.107500', '154504.307500', '154505.507500', '154506.707500', '154507.907500', '154509.107500', '154510.307500', '154511.507500', '154512.707500', '154513.907500', '154515.107500', '154516.307500', '154517.507500', '154518.707500', '154519.907500', '154521.107500', '154522.307500', '154523.507500', '154524.707500', '154525.907500', '154527.107500', '154528.307500', '154529.507500', '154530.707500', '154531.907500', '154533.107500', '154534.307500', '154535.507500', '154536.707500', '154537.907500', '154539.107500', '154540.307500', '154541.507500', '154542.707500', '154543.907500', '154545.107500', '154546.307500', '154547.507500', '154548.707500', '154549.907500', '154551.107500', '154552.307500', '154553.507500', '154554.707500', '154555.907500', '154557.107500', '154558.307500', '154559.507500', '154600.707500', '154601.907500', '154603.107500', '154604.307500', '154605.507500', '154606.707500', '154607.907500', '154609.107500', '154610.307500', '154611.507500', '154612.707500', '154613.907500', '154615.107500', '154616.307500', '154617.507500', '154618.707500', '154619.907500', '154621.107500', '154622.307500', '154623.507500', '154624.707500', '154625.907500', '154627.107500', '154628.307500', '154629.507500', '154630.707500', '154631.907500', '154633.107500', '154634.307500', '154635.507500', '154636.707500', '154637.907500', '154639.107500', '154640.307500', '154641.507500', '154642.707500', '154643.907500', '154645.107500', '154646.307500', '154647.507500', '154648.707500', '154649.907500', '154651.107500', '154652.307500', '154653.507500', '154654.707500', '154655.907500', '154657.107500', '154658.307500', '154659.507500'], 'ContentTime': ['154458.710000', '154458.713000', '154458.726000', '154458.728000', '154458.731000', '154458.733000', '154458.736000', '154458.738000', '154458.741000', '154458.743000', '154458.746000', '154458.748000', '154458.751000', '154458.754000', '154458.756000', '154458.759000', '154458.765000', '154458.768000', '154458.771000', '154458.773000', '154458.776000', '154458.778000', '154538.705000', '154538.708000', '154538.717000', '154538.720000', '154538.722000', '154538.725000', '154538.728000', '154538.731000', '154538.733000', '154538.736000', '154538.738000', '154538.741000', '154538.743000', '154538.746000', '154538.748000', '154538.751000', '154538.753000', '154538.757000', '154538.759000', '154538.762000', '154538.764000', '154538.767000', '154538.769000', '154538.772000', '154538.774000', '154538.777000', '154538.782000', '154538.785000', '154538.787000', '154538.790000', '154538.793000', '154538.795000', '154538.798000', '154538.800000', '154618.705000', '154618.709000', '154618.711000', '154618.714000', '154618.716000', '154618.719000', '154618.721000', '154618.724000', '154618.727000', '154618.729000', '154618.732000', '154618.734000', '154618.737000', '154618.739000', '154618.742000', '154618.745000', '154618.747000', '154618.750000', '154618.752000', '154618.755000', '154618.757000', '154618.760000', '154618.762000', '154618.765000', '154618.767000', '154618.770000', '154618.773000', '154618.775000', '154618.778000', '154618.780000', '154618.783000', '154618.785000', '154618.788000', '154658.706000', '154658.708000', '154658.711000', '154658.714000', '154658.716000', '154658.719000', '154658.721000', '154658.736000', '154658.738000', '154658.741000', '154658.744000', '154658.746000', '154658.749000', '154658.751000', '154658.754000', '154658.756000', '154658.759000', '154658.761000', '154658.764000', '154658.767000', '154658.769000', '154658.772000', '154658.774000', '154658.777000', '154658.779000', '154658.782000', '154658.785000', '154658.787000', '154658.811000', '154658.813000', '154658.890000', '154658.893000', '154658.896000', '154701.398000', '154701.401000', '154701.403000'], 'InstanceCreationTime': ['154458.710000', '154458.713000', '154458.726000', '154458.728000', '154458.731000', '154458.733000', '154458.736000', '154458.738000', '154458.741000', '154458.743000', '154458.746000', '154458.748000', '154458.751000', '154458.754000', '154458.756000', '154458.759000', '154458.765000', '154458.768000', '154458.771000', '154458.773000', '154458.776000', '154458.778000', '154538.705000', '154538.708000', '154538.717000', '154538.720000', '154538.722000', '154538.725000', '154538.728000', '154538.731000', '154538.733000', '154538.736000', '154538.738000', '154538.741000', '154538.743000', '154538.746000', '154538.748000', '154538.751000', '154538.753000', '154538.757000', '154538.759000', '154538.762000', '154538.764000', '154538.767000', '154538.769000', '154538.772000', '154538.774000', '154538.777000', '154538.782000', '154538.785000', '154538.787000', '154538.790000', '154538.793000', '154538.795000', '154538.798000', '154538.800000', '154618.705000', '154618.709000', '154618.711000', '154618.714000', '154618.716000', '154618.719000', '154618.721000', '154618.724000', '154618.727000', '154618.729000', '154618.732000', '154618.734000', '154618.737000', '154618.739000', '154618.742000', '154618.745000', '154618.747000', '154618.750000', '154618.752000', '154618.755000', '154618.757000', '154618.760000', '154618.762000', '154618.765000', '154618.767000', '154618.770000', '154618.773000', '154618.775000', '154618.778000', '154618.780000', '154618.783000', '154618.785000', '154618.788000', '154658.706000', '154658.708000', '154658.711000', '154658.714000', '154658.716000', '154658.719000', '154658.721000', '154658.736000', '154658.738000', '154658.741000', '154658.744000', '154658.746000', '154658.749000', '154658.751000', '154658.754000', '154658.756000', '154658.759000', '154658.761000', '154658.764000', '154658.767000', '154658.769000', '154658.772000', '154658.774000', '154658.777000', '154658.779000', '154658.782000', '154658.785000', '154658.787000', '154658.811000', '154658.813000', '154658.890000', '154658.893000', '154658.896000', '154701.398000', '154701.401000', '154701.403000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2147, 2067, 2036, 1998, 2012, 2006, 1979, 2000, 1998, 1971, 1982, 1986, 1968, 1985, 2004, 1976, 1995, 2001, 1979, 1983, 1990, 1998, 1973, 2001, 2009, 1970, 1977, 1987, 1963, 1974, 1989, 1975, 1991, 1962, 1979, 1983, 1951, 1971, 1975, 1988, 1991, 1973, 2009, 1993, 2009, 2033, 2000, 2014, 1987, 2007, 2017, 1995, 2010, 1980, 2002, 2015, 1996, 2000, 2001, 1978, 1995, 1961, 1987, 1976, 1990, 1982, 1993, 2009, 2011, 2028, 2004, 2030, 1986, 2005, 2028, 2011, 2016, 1995, 2040, 2007, 2038, 1999, 2021, 2023, 1991, 1969, 1993, 1958, 1984, 2011, 1978, 1988, 1960, 1967, 1979, 1963, 1990, 1976, 1970, 1963, 1974, 1956, 2003, 2003, 1992, 2000, 1995, 1965, 1986, 1971, 1974, 1960, 1967, 1956, 1955, 1991, 1959, 1968, 2007, 1999, 1953, 1962, 1972, 1981, 1985], 'WindowCenter': [615.0, 612.0, 609.0, 608.0, 608.0, 607.0, 606.0, 607.0, 607.0, 606.0, 607.0, 606.0, 605.0, 606.0, 607.0, 607.0, 607.0, 607.0, 606.0, 605.0, 605.0, 605.0, 605.0, 605.0, 605.0, 605.0, 605.0, 606.0, 606.0, 607.0, 607.0, 607.0, 607.0, 606.0, 606.0, 606.0, 605.0, 605.0, 605.0, 606.0, 605.0, 605.0, 606.0, 607.0, 607.0, 607.0, 607.0, 606.0, 606.0, 606.0, 606.0, 606.0, 606.0, 605.0, 606.0, 606.0, 606.0, 606.0, 606.0, 605.0, 605.0, 605.0, 606.0, 606.0, 606.0, 606.0, 607.0, 606.0, 607.0, 606.0, 606.0, 606.0, 606.0, 607.0, 606.0, 607.0, 607.0, 607.0, 607.0, 608.0, 608.0, 608.0, 608.0, 607.0, 606.0, 605.0, 606.0, 606.0, 607.0, 607.0, 606.0, 606.0, 605.0, 605.0, 605.0, 605.0, 606.0, 605.0, 605.0, 605.0, 606.0, 605.0, 606.0, 607.0, 606.0, 606.0, 606.0, 605.0, 605.0, 606.0, 606.0, 606.0, 606.0, 606.0, 605.0, 605.0, 605.0, 605.0, 605.0, 604.0, 604.0, 604.0, 605.0, 606.0, 606.0], 'WindowWidth': [1311.0, 1303.0, 1298.0, 1294.0, 1295.0, 1292.0, 1291.0, 1292.0, 1292.0, 1291.0, 1291.0, 1290.0, 1289.0, 1290.0, 1292.0, 1293.0, 1292.0, 1291.0, 1290.0, 1288.0, 1287.0, 1287.0, 1287.0, 1286.0, 1288.0, 1288.0, 1288.0, 1289.0, 1290.0, 1291.0, 1291.0, 1291.0, 1291.0, 1290.0, 1290.0, 1290.0, 1288.0, 1287.0, 1287.0, 1288.0, 1288.0, 1288.0, 1290.0, 1291.0, 1291.0, 1292.0, 1291.0, 1290.0, 1290.0, 1289.0, 1289.0, 1289.0, 1290.0, 1288.0, 1289.0, 1290.0, 1290.0, 1289.0, 1289.0, 1287.0, 1287.0, 1288.0, 1289.0, 1289.0, 1289.0, 1290.0, 1291.0, 1290.0, 1291.0, 1290.0, 1289.0, 1289.0, 1289.0, 1291.0, 1291.0, 1291.0, 1292.0, 1291.0, 1293.0, 1293.0, 1294.0, 1294.0, 1293.0, 1291.0, 1288.0, 1287.0, 1290.0, 1290.0, 1291.0, 1291.0, 1291.0, 1289.0, 1289.0, 1289.0, 1288.0, 1287.0, 1289.0, 1288.0, 1288.0, 1288.0, 1289.0, 1289.0, 1290.0, 1291.0, 1290.0, 1289.0, 1289.0, 1287.0, 1288.0, 1290.0, 1291.0, 1290.0, 1290.0, 1289.0, 1287.0, 1287.0, 1287.0, 1287.0, 1287.0, 1286.0, 1284.0, 1285.0, 1287.0, 1289.0, 1289.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.002455365853658537</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0043689394308943095</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>28.31247082696721</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1245791140163937</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0030955442622949</td></tr>
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<tr><td colspan=3>efc</td><td>0.5231</td></tr>
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<tr><td colspan=3>fber</td><td>678.3665</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.10467087318169042</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>1</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>0.8130081300813008</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.082642661061254</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.012144103057862</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.1730756684936567</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.0627082116322435</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00510047</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>8.233596599893644e-05</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.04886561632156372</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>123</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.292848353745555</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>21.3765</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>11.0171</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>52.6418</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>22.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>360513.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>221.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>85.9199</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.4566</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>225.4158</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>594.2539</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>573.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>104127.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>190.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1047.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>249.9063</td></tr>
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<tr><td colspan=3>tsnr</td><td>53.66652403911576</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |