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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-06_session-01_subject-8029_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" style="">
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Problem loading figure sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" target="_blank">sub-8029/figures/sub-8029_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8029/ses-01/func/sub-8029_ses-01_task-RDMmotion_run-06_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>ec5c4dc1b6cef5aa11558914f0fff0e5</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>13:59:8.595000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.988856, -0.0243481, 0.146871, 0.0500932, 0.983429, -0.174237]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-06</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0541391</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-06</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>17</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1794, -9124, 4395, 416, 3, -419, -67, -127]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
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|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>215.57</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.371006965637207, 0.1201099082827568, 0.33646735548973083, 94.85494232177734], [0.05838017538189888, 2.3579940795898438, -0.4311659634113312, -83.82442474365234], [0.3521563708782196, 0.41777268052101135, 2.3368537425994873, -85.03907012939453], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['135908.595000', '135909.795000', '135910.995000', '135912.195000', '135913.395000', '135914.595000', '135915.795000', '135916.995000', '135918.195000', '135919.395000', '135920.595000', '135921.795000', '135922.995000', '135924.195000', '135925.395000', '135926.595000', '135927.795000', '135928.995000', '135930.195000', '135931.395000', '135932.595000', '135933.795000', '135934.995000', '135936.195000', '135937.395000', '135938.595000', '135939.795000', '135940.995000', '135942.195000', '135943.395000', '135944.595000', '135945.795000', '135946.995000', '135948.195000', '135949.395000', '135950.595000', '135951.795000', '135952.995000', '135954.195000', '135955.395000', '135956.595000', '135957.795000', '135958.995000', '140000.195000', '140001.395000', '140002.595000', '140003.795000', '140004.995000', '140006.195000', '140007.395000', '140008.595000', '140009.795000', '140010.995000', '140012.195000', '140013.395000', '140014.595000', '140015.795000', '140016.995000', '140018.195000', '140019.395000', '140020.595000', '140021.795000', '140022.995000', '140024.195000', '140025.395000', '140026.595000', '140027.795000', '140028.995000', '140030.195000', '140031.395000', '140032.595000', '140033.795000', '140034.995000', '140036.195000', '140037.395000', '140038.595000', '140039.795000', '140040.995000', '140042.195000', '140043.395000', '140044.595000', '140045.795000', '140046.995000', '140048.195000', '140049.395000', '140050.595000', '140051.795000', '140052.995000', '140054.195000', '140055.395000', '140056.595000', '140057.795000', '140058.995000', '140100.195000', '140101.395000', '140102.595000', '140103.795000', '140104.995000', '140106.195000', '140107.395000', '140108.595000', '140109.795000', '140110.995000', '140112.195000', '140113.395000', '140114.595000', '140115.795000', '140116.995000', '140118.195000', '140119.395000', '140120.595000', '140121.795000', '140122.995000', '140124.195000', '140125.395000', '140126.595000', '140127.795000', '140128.995000', '140130.195000', '140131.395000', '140132.595000', '140133.795000', '140134.995000', '140136.195000', '140137.395000'], 'ContentTime': ['135938.586000', '135938.589000', '135938.592000', '135938.603000', '135938.605000', '135938.608000', '135938.611000', '135938.619000', '135938.622000', '135938.625000', '135938.627000', '135938.630000', '135938.632000', '135938.635000', '135938.637000', '135938.640000', '135938.650000', '135938.652000', '135938.655000', '135938.657000', '135938.660000', '135938.663000', '135938.665000', '135938.668000', '140018.582000', '140018.594000', '140018.596000', '140018.599000', '140018.601000', '140018.604000', '140018.607000', '140018.609000', '140018.612000', '140018.614000', '140018.617000', '140018.621000', '140018.624000', '140018.626000', '140018.629000', '140018.631000', '140018.634000', '140018.636000', '140018.639000', '140018.642000', '140018.644000', '140018.647000', '140018.650000', '140018.652000', '140018.655000', '140018.657000', '140018.660000', '140018.662000', '140018.669000', '140018.671000', '140018.674000', '140018.677000', '140018.679000', '140058.581000', '140058.584000', '140058.587000', '140058.590000', '140058.593000', '140058.595000', '140058.598000', '140058.600000', '140058.603000', '140058.606000', '140058.608000', '140058.611000', '140058.614000', '140058.617000', '140058.619000', '140058.622000', '140058.624000', '140058.627000', '140058.629000', '140058.632000', '140058.635000', '140058.645000', '140058.647000', '140058.650000', '140058.653000', '140058.655000', '140058.658000', '140058.660000', '140058.663000', '140058.672000', '140058.675000', '140058.677000', '140058.680000', '140138.582000', '140138.584000', '140138.587000', '140138.590000', '140138.592000', '140138.595000', '140138.597000', '140138.600000', '140138.602000', '140138.605000', '140138.608000', '140138.610000', '140138.613000', '140138.615000', '140138.618000', '140138.621000', '140138.623000', '140138.626000', '140138.628000', '140138.631000', '140138.633000', '140138.636000', '140138.639000', '140138.641000', '140138.644000', '140138.646000', '140138.649000', '140138.651000', '140138.654000', '140138.656000', '140138.659000', '140138.662000', '140138.664000', '140138.667000', '140139.422000'], 'InstanceCreationTime': ['135938.586000', '135938.589000', '135938.592000', '135938.603000', '135938.605000', '135938.608000', '135938.611000', '135938.619000', '135938.622000', '135938.625000', '135938.627000', '135938.630000', '135938.632000', '135938.635000', '135938.637000', '135938.640000', '135938.650000', '135938.652000', '135938.655000', '135938.657000', '135938.660000', '135938.663000', '135938.665000', '135938.668000', '140018.582000', '140018.594000', '140018.596000', '140018.599000', '140018.601000', '140018.604000', '140018.607000', '140018.609000', '140018.612000', '140018.614000', '140018.617000', '140018.621000', '140018.624000', '140018.626000', '140018.629000', '140018.631000', '140018.634000', '140018.636000', '140018.639000', '140018.642000', '140018.644000', '140018.647000', '140018.650000', '140018.652000', '140018.655000', '140018.657000', '140018.660000', '140018.662000', '140018.669000', '140018.671000', '140018.674000', '140018.677000', '140018.679000', '140058.581000', '140058.584000', '140058.587000', '140058.590000', '140058.593000', '140058.595000', '140058.598000', '140058.600000', '140058.603000', '140058.606000', '140058.608000', '140058.611000', '140058.614000', '140058.617000', '140058.619000', '140058.622000', '140058.624000', '140058.627000', '140058.629000', '140058.632000', '140058.635000', '140058.645000', '140058.647000', '140058.650000', '140058.653000', '140058.655000', '140058.658000', '140058.660000', '140058.663000', '140058.672000', '140058.675000', '140058.677000', '140058.680000', '140138.582000', '140138.584000', '140138.587000', '140138.590000', '140138.592000', '140138.595000', '140138.597000', '140138.600000', '140138.602000', '140138.605000', '140138.608000', '140138.610000', '140138.613000', '140138.615000', '140138.618000', '140138.621000', '140138.623000', '140138.626000', '140138.628000', '140138.631000', '140138.633000', '140138.636000', '140138.639000', '140138.641000', '140138.644000', '140138.646000', '140138.649000', '140138.651000', '140138.654000', '140138.656000', '140138.659000', '140138.662000', '140138.664000', '140138.667000', '140139.422000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2222, 2089, 2081, 2041, 2057, 2071, 2035, 2044, 2042, 2042, 2023, 2010, 1983, 2004, 1998, 2051, 2066, 2039, 2056, 2073, 2085, 2069, 2045, 2026, 2042, 2016, 2003, 2036, 2024, 2021, 2031, 2038, 2018, 2025, 2041, 2072, 2059, 2058, 2046, 2023, 2017, 2062, 2049, 2041, 2043, 2037, 2015, 2028, 2071, 2092, 2084, 2079, 2135, 2122, 2099, 2098, 2107, 2098, 2113, 2112, 2123, 2083, 2099, 2089, 2094, 2107, 2126, 2095, 2093, 2075, 2070, 2093, 2072, 2071, 2097, 2077, 2075, 2030, 1988, 1976, 1944, 2039, 2011, 2023, 2043, 2017, 2002, 2031, 2016, 2048, 2046, 2038, 2055, 2037, 2041, 2055, 2040, 2031, 2044, 2032, 2039, 2014, 2022, 2023, 2011, 2018, 2029, 2026, 2009, 2007, 2021, 2029, 2030, 2009, 2009, 2034, 2031, 2024, 2021, 2025, 2003, 2036, 2026, 2027, 2031], 'WindowCenter': [607.0, 603.0, 602.0, 601.0, 601.0, 601.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 598.0, 599.0, 599.0, 599.0, 600.0, 601.0, 601.0, 601.0, 600.0, 599.0, 597.0, 596.0, 595.0, 595.0, 595.0, 596.0, 596.0, 596.0, 596.0, 596.0, 597.0, 598.0, 599.0, 600.0, 600.0, 601.0, 601.0, 600.0, 600.0, 600.0, 599.0, 599.0, 599.0, 598.0, 598.0, 598.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 598.0, 598.0, 598.0, 598.0, 599.0, 599.0, 599.0, 599.0, 600.0, 600.0, 600.0, 600.0, 601.0, 601.0, 601.0, 602.0, 602.0, 602.0, 601.0, 601.0, 601.0, 602.0, 603.0, 601.0, 600.0, 600.0, 599.0, 600.0, 600.0, 600.0, 601.0, 601.0, 600.0, 599.0, 598.0, 599.0, 599.0, 598.0, 598.0, 597.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 597.0, 598.0, 598.0, 598.0, 599.0, 599.0, 598.0, 598.0, 598.0, 599.0, 599.0, 600.0, 600.0, 600.0, 600.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0], 'WindowWidth': [1298.0, 1288.0, 1284.0, 1282.0, 1282.0, 1281.0, 1279.0, 1279.0, 1280.0, 1280.0, 1280.0, 1279.0, 1277.0, 1278.0, 1277.0, 1278.0, 1279.0, 1281.0, 1283.0, 1282.0, 1280.0, 1276.0, 1273.0, 1270.0, 1269.0, 1268.0, 1268.0, 1270.0, 1270.0, 1270.0, 1270.0, 1271.0, 1272.0, 1274.0, 1277.0, 1280.0, 1281.0, 1282.0, 1282.0, 1281.0, 1280.0, 1280.0, 1277.0, 1277.0, 1277.0, 1275.0, 1274.0, 1275.0, 1276.0, 1276.0, 1276.0, 1276.0, 1277.0, 1275.0, 1275.0, 1274.0, 1273.0, 1274.0, 1276.0, 1276.0, 1278.0, 1277.0, 1278.0, 1279.0, 1280.0, 1280.0, 1281.0, 1282.0, 1283.0, 1283.0, 1283.0, 1284.0, 1281.0, 1282.0, 1283.0, 1284.0, 1285.0, 1283.0, 1280.0, 1280.0, 1277.0, 1280.0, 1279.0, 1281.0, 1283.0, 1281.0, 1279.0, 1277.0, 1276.0, 1276.0, 1276.0, 1275.0, 1275.0, 1273.0, 1274.0, 1274.0, 1274.0, 1275.0, 1275.0, 1275.0, 1275.0, 1275.0, 1275.0, 1273.0, 1274.0, 1275.0, 1276.0, 1277.0, 1277.0, 1276.0, 1276.0, 1276.0, 1278.0, 1278.0, 1279.0, 1280.0, 1280.0, 1280.0, 1278.0, 1278.0, 1277.0, 1278.0, 1277.0, 1277.0, 1278.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0007837903225806452</td></tr>
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<tr><td colspan=3>aqi</td><td>0.005067517580645161</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>29.869508386585366</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.0832928768292678</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9689412226829269</td></tr>
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<tr><td colspan=3>efc</td><td>0.5241</td></tr>
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<tr><td colspan=3>fber</td><td>565.3026</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.09189287471473667</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>2</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>1.6129032258064515</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3508468681423142</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.3232387030264205</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.412114533213706</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.3171873681868167</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0200605</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>0.019212553277611732</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.06905744969844818</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.148821518130234</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>51.4315</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>12.4706</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>55.8483</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>23.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>361037.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>210.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>100.764</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.6284</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>227.2208</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>571.7543</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>544.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>103603.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>165.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1025.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>253.1608</td></tr>
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<tr><td colspan=3>tsnr</td><td>50.511312891263515</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |