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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-06_session-01_subject-8025_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-background_bold.svg</a></small>
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<div id="datatype-figures_desc-zoomed_run-06_session-01_subject-8025_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg</a></small>
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_run-06_session-01_subject-8025_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg</a></small>
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<div id="datatype-figures_desc-norm_run-06_session-01_subject-8025_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" target="_blank">sub-8025/figures/sub-8025_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8025/ses-01/func/sub-8025_ses-01_task-RDMmotion_run-06_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>772a1e2226ae73d6074942db1e207607</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>13:56:33.987500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.998953, 0.0386617, -0.0244382, -0.039249, 0.99894, -0.0240308]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-06</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0486004</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-06</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>17</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1753, -9128, 4445, 707, -67, -187, 31, -1]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>219.091</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3952178955078125, -0.09410848468542099, -0.056359704583883286, 112.23524475097656], [-0.09270010888576508, 2.39518666267395, -0.05991552397608757, -89.46002960205078], [-0.05859607085585594, 0.05761924386024475, 2.398589849472046, -56.61228942871094], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['135633.987500', '135635.187500', '135636.387500', '135637.587500', '135638.787500', '135639.987500', '135641.187500', '135642.387500', '135643.587500', '135644.787500', '135645.987500', '135647.187500', '135648.387500', '135649.587500', '135650.787500', '135651.987500', '135653.187500', '135654.387500', '135655.587500', '135656.787500', '135657.987500', '135659.187500', '135700.387500', 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'135811.187500', '135812.387500', '135813.587500', '135814.787500', '135815.987500', '135817.187500', '135818.387500', '135819.587500', '135820.787500', '135821.987500', '135823.187500', '135824.387500', '135825.587500', '135826.787500', '135827.987500', '135829.187500', '135830.387500', '135831.587500', '135832.787500', '135833.987500', '135835.187500', '135836.387500', '135837.587500', '135838.787500', '135839.987500', '135841.187500', '135842.387500', '135843.587500', '135844.787500', '135845.987500', '135847.187500', '135848.387500', '135849.587500', '135850.787500', '135851.987500', '135853.187500', '135854.387500', '135855.587500', '135856.787500', '135857.987500', '135859.187500', '135900.387500', '135901.587500', '135902.787500'], 'ContentTime': ['135718.001000', '135718.005000', '135718.011000', '135718.013000', '135718.016000', '135718.019000', '135718.021000', '135718.024000', '135718.027000', '135718.029000', '135718.032000', '135718.034000', '135718.037000', 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'135837.983000', '135837.986000', '135837.988000', '135837.991000', '135837.993000', '135837.996000', '135837.998000', '135838.002000', '135838.005000', '135838.007000', '135838.010000', '135838.012000', '135838.015000', '135838.018000', '135838.020000', '135838.025000', '135838.028000', '135838.031000', '135838.033000', '135838.036000', '135838.039000', '135838.041000', '135838.044000', '135838.047000', '135838.050000', '135838.053000', '135838.055000', '135838.058000', '135838.061000', '135838.063000', '135838.066000', '135838.068000', '135904.103000', '135904.106000', '135904.109000', '135904.112000', '135904.114000', '135904.118000', '135904.121000', '135904.123000', '135904.126000', '135904.129000', '135904.131000', '135904.134000', '135904.137000', '135904.139000', '135904.142000', '135904.145000', '135904.148000', '135904.150000', '135904.153000', '135904.156000', '135904.158000', '135904.161000'], 'InstanceCreationTime': ['135718.001000', '135718.005000', '135718.011000', '135718.013000', '135718.016000', '135718.019000', '135718.021000', '135718.024000', '135718.027000', '135718.029000', '135718.032000', '135718.034000', '135718.037000', '135718.040000', '135718.042000', '135718.045000', '135718.047000', '135718.050000', '135718.053000', '135718.056000', '135718.058000', '135718.061000', '135718.064000', '135718.066000', '135718.069000', '135718.072000', '135718.074000', '135718.077000', '135718.079000', '135718.082000', '135718.085000', '135718.087000', '135718.090000', '135718.094000', '135718.096000', '135718.099000', '135757.973000', '135757.976000', '135757.978000', '135757.981000', '135757.983000', '135757.986000', '135757.989000', '135757.991000', '135757.994000', '135757.996000', '135758.000000', '135758.003000', '135758.005000', '135758.008000', '135758.011000', '135758.019000', '135758.022000', '135758.025000', '135758.027000', '135758.030000', '135758.032000', '135758.035000', '135758.037000', '135758.040000', '135758.043000', '135758.046000', '135758.049000', '135758.052000', '135758.055000', '135758.059000', '135758.062000', '135758.064000', '135758.067000', '135837.972000', '135837.975000', '135837.983000', '135837.986000', '135837.988000', '135837.991000', '135837.993000', '135837.996000', '135837.998000', '135838.002000', '135838.005000', '135838.007000', '135838.010000', '135838.012000', '135838.015000', '135838.018000', '135838.020000', '135838.025000', '135838.028000', '135838.031000', '135838.033000', '135838.036000', '135838.039000', '135838.041000', '135838.044000', '135838.047000', '135838.050000', '135838.053000', '135838.055000', '135838.058000', '135838.061000', '135838.063000', '135838.066000', '135838.068000', '135904.103000', '135904.106000', '135904.109000', '135904.112000', '135904.114000', '135904.118000', '135904.121000', '135904.123000', '135904.126000', '135904.129000', '135904.131000', '135904.134000', '135904.137000', '135904.139000', '135904.142000', '135904.145000', '135904.148000', '135904.150000', '135904.153000', '135904.156000', '135904.158000', '135904.161000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2367, 2302, 2268, 2266, 2239, 2228, 2238, 2250, 2248, 2237, 2243, 2245, 2241, 2244, 2233, 2255, 2251, 2238, 2219, 2214, 2209, 2223, 2211, 2209, 2180, 2184, 2186, 2181, 2177, 2189, 2187, 2173, 2192, 2180, 2200, 2193, 2204, 2188, 2212, 2216, 2210, 2205, 2213, 2183, 2187, 2186, 2183, 2185, 2198, 2187, 2188, 2186, 2185, 2198, 2169, 2178, 2178, 2174, 2158, 2177, 2174, 2193, 2183, 2160, 2162, 2163, 2152, 2163, 2147, 2159, 2125, 2139, 2129, 2167, 2142, 2135, 2140, 2125, 2133, 2144, 2140, 2139, 2148, 2154, 2149, 2140, 2165, 2169, 2150, 2159, 2137, 2142, 2130, 2139, 2150, 2147, 2182, 2172, 2166, 2149, 2146, 2123, 2109, 2098, 2099, 2095, 2104, 2100, 2125, 2124, 2115, 2122, 2101, 2110, 2113, 2115, 2126, 2146, 2146, 2138, 2131, 2133, 2140, 2158, 2162], 'WindowCenter': [614.0, 609.0, 607.0, 606.0, 606.0, 606.0, 606.0, 608.0, 607.0, 607.0, 608.0, 608.0, 607.0, 608.0, 608.0, 608.0, 608.0, 607.0, 607.0, 606.0, 606.0, 606.0, 605.0, 605.0, 604.0, 604.0, 605.0, 604.0, 605.0, 605.0, 605.0, 605.0, 606.0, 606.0, 606.0, 606.0, 607.0, 606.0, 607.0, 607.0, 606.0, 605.0, 606.0, 605.0, 606.0, 606.0, 606.0, 606.0, 606.0, 605.0, 605.0, 604.0, 604.0, 605.0, 604.0, 604.0, 604.0, 604.0, 604.0, 605.0, 605.0, 605.0, 605.0, 604.0, 605.0, 604.0, 605.0, 605.0, 606.0, 606.0, 606.0, 605.0, 606.0, 606.0, 606.0, 605.0, 605.0, 605.0, 606.0, 605.0, 606.0, 606.0, 605.0, 606.0, 606.0, 606.0, 606.0, 606.0, 605.0, 606.0, 605.0, 605.0, 605.0, 605.0, 605.0, 604.0, 605.0, 606.0, 606.0, 605.0, 604.0, 603.0, 603.0, 604.0, 604.0, 605.0, 605.0, 605.0, 605.0, 605.0, 605.0, 605.0, 604.0, 605.0, 604.0, 604.0, 604.0, 604.0, 604.0, 604.0, 605.0, 605.0, 605.0, 605.0, 605.0], 'WindowWidth': [1311.0, 1299.0, 1294.0, 1291.0, 1292.0, 1291.0, 1292.0, 1294.0, 1294.0, 1294.0, 1295.0, 1295.0, 1294.0, 1295.0, 1295.0, 1296.0, 1296.0, 1293.0, 1292.0, 1291.0, 1290.0, 1291.0, 1289.0, 1289.0, 1287.0, 1287.0, 1287.0, 1287.0, 1288.0, 1287.0, 1288.0, 1289.0, 1291.0, 1291.0, 1292.0, 1292.0, 1293.0, 1292.0, 1292.0, 1292.0, 1291.0, 1290.0, 1291.0, 1289.0, 1290.0, 1291.0, 1291.0, 1291.0, 1291.0, 1290.0, 1288.0, 1287.0, 1287.0, 1288.0, 1286.0, 1287.0, 1287.0, 1287.0, 1287.0, 1288.0, 1288.0, 1288.0, 1288.0, 1288.0, 1288.0, 1288.0, 1290.0, 1290.0, 1291.0, 1291.0, 1291.0, 1289.0, 1290.0, 1291.0, 1290.0, 1289.0, 1290.0, 1288.0, 1290.0, 1290.0, 1290.0, 1290.0, 1289.0, 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</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0011823387096774193</td></tr>
<tr><td colspan=3>aqi</td><td>0.004095483306451614</td></tr>
<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>34.16420440357724</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.1645165716260155</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9904322912195118</td></tr>
<tr><td colspan=3>efc</td><td>0.5274</td></tr>
<tr><td colspan=3>fber</td><td>723.973</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.16821370073380093</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>45</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>36.29032258064516</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.1478624820090055</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>2.902106566518147</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.279914342445214</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.2615665370636564</td></tr>
<tr><td colspan=3>gcor</td><td>0.0044258</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.024112697690725327</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.06863522529602051</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.2384767793233555</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>68.3739</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>9.1826</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>51.2622</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>20.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>353302.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>203.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>96.1291</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>0.9446</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>217.2072</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>574.1208</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>547.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>111338.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>205.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1018.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>244.3615</td></tr>
<tr><td colspan=3>tsnr</td><td>51.75173345254734</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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Record specific artifacts
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<fieldset id="qcartifacts-group" class="form-group">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>