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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-05_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" style="">
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Problem loading figure sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8024/ses-01/func/sub-8024_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>faa28a009a3b63f60b4e6344b219e911</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>12:04:21.652500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.990031, -0.0283668, 0.137965, 0.0207381, 0.998192, 0.0564206]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0506296</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1780, -9115, 4430, 504, -89, -74, 28, 29]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
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<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
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|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
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|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>245.896</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.373823642730713, 0.04972442239522934, 0.3343591094017029, 101.50154113769531], [0.06801580637693405, 2.3933913707733154, 0.12719270586967468, -92.10521697998047], [0.33080318570137024, -0.13528114557266235, 2.3731889724731445, -67.49132537841797], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
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|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
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<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['120421.652500', '120422.852500', '120424.052500', '120425.252500', '120426.452500', '120427.652500', '120428.852500', '120430.052500', '120431.252500', '120432.452500', '120433.652500', '120434.852500', '120436.052500', '120437.252500', '120438.452500', '120439.652500', '120440.852500', '120442.052500', '120443.252500', '120444.452500', '120445.652500', '120446.852500', '120448.052500', '120449.252500', '120450.452500', '120451.652500', '120452.852500', '120454.052500', '120455.252500', '120456.452500', '120457.652500', '120458.852500', '120500.052500', '120501.252500', '120502.452500', '120503.652500', '120504.852500', '120506.052500', '120507.252500', '120508.452500', '120509.652500', '120510.852500', '120512.052500', '120513.252500', '120514.452500', '120515.652500', '120516.852500', '120518.052500', '120519.252500', '120520.452500', '120521.652500', '120522.852500', '120524.052500', '120525.252500', '120526.452500', '120527.652500', '120528.852500', '120530.052500', '120531.252500', '120532.452500', '120533.652500', '120534.852500', '120536.052500', '120537.252500', '120538.452500', '120539.652500', '120540.852500', '120542.052500', '120543.252500', '120544.452500', '120545.652500', '120546.852500', '120548.052500', '120549.252500', '120550.452500', '120551.652500', '120552.852500', '120554.052500', '120555.252500', '120556.452500', '120557.652500', '120558.852500', '120600.052500', '120601.252500', '120602.452500', '120603.652500', '120604.852500', '120606.052500', '120607.252500', '120608.452500', '120609.652500', '120610.852500', '120612.052500', '120613.252500', '120614.452500', '120615.652500', '120616.852500', '120618.052500', '120619.252500', '120620.452500', '120621.652500', '120622.852500', '120624.052500', '120625.252500', '120626.452500', '120627.652500', '120628.852500', '120630.052500', '120631.252500', '120632.452500', '120633.652500', '120634.852500', '120636.052500', '120637.252500', '120638.452500', '120639.652500', '120640.852500', '120642.052500', '120643.252500', '120644.452500', '120645.652500', '120646.852500', '120648.052500', '120649.252500', '120650.452500'], 'ContentTime': ['120457.977000', '120457.980000', '120457.983000', '120457.986000', '120457.989000', '120457.991000', '120458.004000', '120458.006000', '120458.009000', '120458.011000', '120458.014000', '120458.017000', '120458.019000', '120458.022000', '120458.025000', '120458.027000', '120458.030000', '120458.032000', '120458.035000', '120458.037000', '120458.040000', '120458.042000', '120458.045000', '120458.048000', '120458.050000', '120458.053000', '120458.056000', '120458.058000', '120458.061000', '120537.973000', '120537.975000', '120537.978000', '120537.981000', '120537.983000', '120537.986000', '120537.988000', '120537.991000', '120537.994000', '120537.996000', '120538.000000', '120538.004000', '120538.007000', '120538.010000', '120538.012000', '120538.015000', '120538.018000', '120538.020000', '120538.023000', '120538.025000', '120538.028000', '120538.030000', '120538.033000', '120538.036000', '120538.038000', '120538.041000', '120538.043000', '120538.046000', '120538.049000', '120538.051000', '120538.054000', '120538.058000', '120538.060000', '120538.063000', '120617.973000', '120617.976000', '120617.993000', '120617.996000', '120617.998000', '120618.001000', '120618.004000', '120618.006000', '120618.018000', '120618.021000', '120618.023000', '120618.026000', '120618.028000', '120618.031000', '120618.033000', '120618.036000', '120618.039000', '120618.041000', '120618.044000', '120618.047000', '120618.049000', '120618.052000', '120618.054000', '120618.057000', '120618.060000', '120618.062000', '120618.065000', '120618.067000', '120618.070000', '120618.073000', '120618.075000', '120618.078000', '120618.080000', '120652.204000', '120652.207000', '120652.209000', '120652.212000', '120652.215000', '120652.217000', '120652.220000', '120652.222000', '120652.225000', '120652.228000', '120652.230000', '120652.233000', '120652.235000', '120652.238000', '120652.240000', '120652.243000', '120652.246000', '120652.248000', '120652.251000', '120652.254000', '120652.256000', '120652.259000', '120652.262000', '120652.264000', '120652.267000', '120652.269000', '120652.272000', '120652.275000', '120652.277000'], 'InstanceCreationTime': ['120457.977000', '120457.980000', '120457.983000', '120457.986000', '120457.989000', '120457.991000', '120458.004000', '120458.006000', '120458.009000', '120458.011000', '120458.014000', '120458.017000', '120458.019000', '120458.022000', '120458.025000', '120458.027000', '120458.030000', '120458.032000', '120458.035000', '120458.037000', '120458.040000', '120458.042000', '120458.045000', '120458.048000', '120458.050000', '120458.053000', '120458.056000', '120458.058000', '120458.061000', '120537.973000', '120537.975000', '120537.978000', '120537.981000', '120537.983000', '120537.986000', '120537.988000', '120537.991000', '120537.994000', '120537.996000', '120538.000000', '120538.004000', '120538.007000', '120538.010000', '120538.012000', '120538.015000', '120538.018000', '120538.020000', '120538.023000', '120538.025000', '120538.028000', '120538.030000', '120538.033000', '120538.036000', '120538.038000', '120538.041000', '120538.043000', '120538.046000', '120538.049000', '120538.051000', '120538.054000', '120538.058000', '120538.060000', '120538.063000', '120617.973000', '120617.976000', '120617.993000', '120617.996000', '120617.998000', '120618.001000', '120618.004000', '120618.006000', '120618.018000', '120618.021000', '120618.023000', '120618.026000', '120618.028000', '120618.031000', '120618.033000', '120618.036000', '120618.039000', '120618.041000', '120618.044000', '120618.047000', '120618.049000', '120618.052000', '120618.054000', '120618.057000', '120618.060000', '120618.062000', '120618.065000', '120618.067000', '120618.070000', '120618.073000', '120618.075000', '120618.078000', '120618.080000', '120652.204000', '120652.207000', '120652.209000', '120652.212000', '120652.215000', '120652.217000', '120652.220000', '120652.222000', '120652.225000', '120652.228000', '120652.230000', '120652.233000', '120652.235000', '120652.238000', '120652.240000', '120652.243000', '120652.246000', '120652.248000', '120652.251000', '120652.254000', '120652.256000', '120652.259000', '120652.262000', '120652.264000', '120652.267000', '120652.269000', '120652.272000', '120652.275000', '120652.277000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2828, 2696, 2661, 2641, 2629, 2633, 2609, 2585, 2608, 2601, 2584, 2620, 2576, 2595, 2623, 2585, 2607, 2603, 2624, 2583, 2609, 2583, 2606, 2603, 2607, 2597, 2590, 2597, 2591, 2594, 2604, 2600, 2606, 2594, 2582, 2598, 2600, 2584, 2577, 2609, 2592, 2591, 2605, 2612, 2609, 2612, 2620, 2606, 2622, 2617, 2598, 2593, 2607, 2565, 2581, 2564, 2569, 2579, 2582, 2604, 2572, 2583, 2574, 2572, 2576, 2549, 2577, 2574, 2579, 2610, 2592, 2633, 2611, 2614, 2588, 2624, 2610, 2615, 2596, 2638, 2616, 2601, 2628, 2608, 2620, 2630, 2608, 2593, 2592, 2620, 2598, 2618, 2607, 2606, 2595, 2606, 2605, 2601, 2588, 2614, 2607, 2597, 2598, 2591, 2584, 2601, 2606, 2592, 2604, 2592, 2588, 2599, 2588, 2613, 2606, 2616, 2623, 2633, 2619, 2605, 2606, 2597, 2592, 2610, 2606], 'WindowCenter': [645.0, 643.0, 643.0, 642.0, 641.0, 640.0, 639.0, 638.0, 639.0, 639.0, 639.0, 640.0, 639.0, 639.0, 639.0, 639.0, 639.0, 640.0, 641.0, 641.0, 641.0, 640.0, 640.0, 640.0, 640.0, 640.0, 639.0, 639.0, 639.0, 640.0, 640.0, 640.0, 640.0, 641.0, 640.0, 640.0, 640.0, 639.0, 639.0, 639.0, 640.0, 640.0, 640.0, 640.0, 640.0, 640.0, 640.0, 639.0, 640.0, 641.0, 640.0, 640.0, 639.0, 639.0, 639.0, 640.0, 640.0, 640.0, 640.0, 639.0, 639.0, 640.0, 640.0, 641.0, 641.0, 640.0, 641.0, 641.0, 642.0, 642.0, 642.0, 642.0, 642.0, 642.0, 642.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 640.0, 640.0, 640.0, 641.0, 640.0, 640.0, 641.0, 640.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 640.0, 641.0, 640.0, 640.0, 641.0, 642.0, 643.0, 642.0, 642.0, 641.0, 640.0, 640.0, 640.0, 640.0, 640.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 641.0, 642.0, 642.0, 642.0, 641.0, 641.0], 'WindowWidth': [1373.0, 1367.0, 1366.0, 1364.0, 1362.0, 1360.0, 1358.0, 1356.0, 1357.0, 1357.0, 1358.0, 1359.0, 1358.0, 1358.0, 1357.0, 1357.0, 1357.0, 1359.0, 1361.0, 1363.0, 1362.0, 1361.0, 1360.0, 1359.0, 1359.0, 1360.0, 1358.0, 1357.0, 1358.0, 1359.0, 1359.0, 1359.0, 1359.0, 1361.0, 1360.0, 1360.0, 1359.0, 1358.0, 1358.0, 1358.0, 1359.0, 1359.0, 1359.0, 1359.0, 1359.0, 1361.0, 1359.0, 1359.0, 1360.0, 1361.0, 1360.0, 1359.0, 1358.0, 1358.0, 1359.0, 1359.0, 1361.0, 1361.0, 1360.0, 1359.0, 1358.0, 1359.0, 1360.0, 1361.0, 1362.0, 1361.0, 1362.0, 1364.0, 1365.0, 1366.0, 1364.0, 1364.0, 1365.0, 1365.0, 1364.0, 1362.0, 1362.0, 1362.0, 1362.0, 1363.0, 1362.0, 1363.0, 1362.0, 1361.0, 1361.0, 1361.0, 1362.0, 1361.0, 1361.0, 1362.0, 1361.0, 1361.0, 1363.0, 1363.0, 1362.0, 1362.0, 1362.0, 1362.0, 1361.0, 1361.0, 1360.0, 1361.0, 1362.0, 1364.0, 1366.0, 1365.0, 1363.0, 1361.0, 1361.0, 1361.0, 1360.0, 1361.0, 1361.0, 1362.0, 1362.0, 1362.0, 1362.0, 1361.0, 1362.0, 1362.0, 1366.0, 1366.0, 1364.0, 1363.0, 1362.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0008455833333333334</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0034193446666666663</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>5</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>30.308010678403363</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1061434185714287</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9942645162184871</td></tr>
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<tr><td colspan=3>efc</td><td>0.5766</td></tr>
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<tr><td colspan=3>fber</td><td>367.3941</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.09798123891407069</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>1</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>0.8333333333333334</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3326167199394114</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.0749911178439815</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.569255008567837</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.353604033406415</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00609747</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.014818370342254639</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.16203592717647552</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>120</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.0188453694359674</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>18.4167</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>18.063</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>86.7085</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>29.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>347600.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>14.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>387.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>141.8591</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.9206</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>254.4207</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>588.494</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>557.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>117040.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>167.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1084.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>275.8991</td></tr>
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<tr><td colspan=3>tsnr</td><td>55.15389095572755</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |