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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8024_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8024/figures/sub-8024_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8024/ses-01/func/sub-8024_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>5feb445c058712f811174a771c729d5f</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>11:40:52.782500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.990031, -0.0283668, 0.137965, 0.0207381, 0.998192, 0.0564206]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0506296</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1780, -9115, 4430, 504, -89, -74, 28, 29]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
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<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
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|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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<tr><td colspan=2>TxRefAmp</td><td>245.896</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.373823642730713, 0.04972442239522934, 0.3343591094017029, 101.50154113769531], [0.06801580637693405, 2.3933913707733154, 0.12719270586967468, -92.10521697998047], [0.33080318570137024, -0.13528114557266235, 2.3731889724731445, -67.49132537841797], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['114052.782500', '114053.982500', '114055.182500', '114056.382500', '114057.582500', '114058.782500', '114059.982500', '114101.182500', '114102.382500', '114103.582500', '114104.782500', '114105.982500', '114107.182500', '114108.382500', '114109.582500', '114110.782500', '114111.982500', '114113.182500', '114114.382500', '114115.582500', '114116.782500', '114117.982500', '114119.182500', '114120.382500', '114121.582500', '114122.782500', '114123.982500', '114125.182500', '114126.382500', '114127.582500', '114128.782500', '114129.982500', '114131.182500', '114132.382500', '114133.582500', '114134.782500', '114135.982500', '114137.182500', '114138.382500', '114139.582500', '114140.782500', '114141.982500', '114143.182500', '114144.382500', '114145.582500', '114146.782500', '114147.982500', '114149.182500', '114150.382500', '114151.582500', '114152.782500', '114153.982500', '114155.182500', '114156.382500', '114157.582500', '114158.782500', '114159.982500', '114201.182500', '114202.382500', '114203.582500', '114204.782500', '114205.982500', '114207.182500', '114208.382500', '114209.582500', '114210.782500', '114211.982500', '114213.182500', '114214.382500', '114215.582500', '114216.782500', '114217.982500', '114219.182500', '114220.382500', '114221.582500', '114222.782500', '114223.982500', '114225.182500', '114226.382500', '114227.582500', '114228.782500', '114229.982500', '114231.182500', '114232.382500', '114233.582500', '114234.782500', '114235.982500', '114237.182500', '114238.382500', '114239.582500', '114240.782500', '114241.982500', '114243.182500', '114244.382500', '114245.582500', '114246.782500', '114247.982500', '114249.182500', '114250.382500', '114251.582500', '114252.782500', '114253.982500', '114255.182500', '114256.382500', '114257.582500', '114258.782500', '114259.982500', '114301.182500', '114302.382500', '114303.582500', '114304.782500', '114305.982500', '114307.182500', '114308.382500', '114309.582500', '114310.782500', '114311.982500', '114313.182500', '114314.382500', '114315.582500', '114316.782500', '114317.982500', '114319.182500', '114320.382500', '114321.582500'], 'ContentTime': ['114126.875000', '114126.878000', '114126.880000', '114126.883000', '114126.886000', '114126.899000', '114126.902000', '114126.904000', '114126.907000', '114126.909000', '114126.912000', '114126.914000', '114126.917000', '114126.920000', '114126.922000', '114126.925000', '114126.927000', '114126.930000', '114126.932000', '114126.935000', '114126.938000', '114126.940000', '114126.943000', '114126.945000', '114126.948000', '114126.950000', '114126.953000', '114126.955000', '114146.872000', '114146.875000', '114146.877000', '114146.880000', '114146.882000', '114146.885000', '114146.887000', '114146.890000', '114146.892000', '114146.895000', '114146.897000', '114146.900000', '114146.902000', '114146.905000', '114146.908000', '114146.910000', '114146.913000', '114226.872000', '114226.874000', '114226.877000', '114226.879000', '114226.882000', '114226.884000', '114226.887000', '114226.890000', '114226.892000', '114226.895000', '114226.897000', '114226.900000', '114226.902000', '114226.905000', '114226.907000', '114226.910000', '114226.912000', '114226.915000', '114226.917000', '114226.920000', '114226.923000', '114226.925000', '114226.928000', '114226.930000', '114226.933000', '114226.935000', '114226.938000', '114226.940000', '114226.943000', '114226.945000', '114226.948000', '114226.950000', '114226.953000', '114306.872000', '114306.874000', '114306.877000', '114306.879000', '114306.882000', '114306.885000', '114306.887000', '114306.890000', '114306.892000', '114306.895000', '114306.897000', '114306.900000', '114306.902000', '114306.905000', '114306.908000', '114306.910000', '114306.913000', '114306.915000', '114306.918000', '114306.920000', '114306.923000', '114306.926000', '114306.928000', '114306.931000', '114306.933000', '114306.936000', '114306.938000', '114306.941000', '114306.944000', '114306.946000', '114306.949000', '114306.951000', '114306.954000', '114322.768000', '114322.771000', '114322.773000', '114322.782000', '114322.784000', '114322.787000', '114322.789000', '114322.792000', '114322.795000', '114322.797000', '114322.800000', '114322.803000', '114322.805000', '114322.808000'], 'InstanceCreationTime': ['114126.875000', '114126.878000', '114126.880000', '114126.883000', '114126.886000', '114126.899000', '114126.902000', '114126.904000', '114126.907000', '114126.909000', '114126.912000', '114126.914000', '114126.917000', '114126.920000', '114126.922000', '114126.925000', '114126.927000', '114126.930000', '114126.932000', '114126.935000', '114126.938000', '114126.940000', '114126.943000', '114126.945000', '114126.948000', '114126.950000', '114126.953000', '114126.955000', '114146.872000', '114146.875000', '114146.877000', '114146.880000', '114146.882000', '114146.885000', '114146.887000', '114146.890000', '114146.892000', '114146.895000', '114146.897000', '114146.900000', '114146.902000', '114146.905000', '114146.908000', '114146.910000', '114146.913000', '114226.872000', '114226.874000', '114226.877000', '114226.879000', '114226.882000', '114226.884000', '114226.887000', '114226.890000', '114226.892000', '114226.895000', '114226.897000', '114226.900000', '114226.902000', '114226.905000', '114226.907000', '114226.910000', '114226.912000', '114226.915000', '114226.917000', '114226.920000', '114226.923000', '114226.925000', '114226.928000', '114226.930000', '114226.933000', '114226.935000', '114226.938000', '114226.940000', '114226.943000', '114226.945000', '114226.948000', '114226.950000', '114226.953000', '114306.872000', '114306.874000', '114306.877000', '114306.879000', '114306.882000', '114306.885000', '114306.887000', '114306.890000', '114306.892000', '114306.895000', '114306.897000', '114306.900000', '114306.902000', '114306.905000', '114306.908000', '114306.910000', '114306.913000', '114306.915000', '114306.918000', '114306.920000', '114306.923000', '114306.926000', '114306.928000', '114306.931000', '114306.933000', '114306.936000', '114306.938000', '114306.941000', '114306.944000', '114306.946000', '114306.949000', '114306.951000', '114306.954000', '114322.768000', '114322.771000', '114322.773000', '114322.782000', '114322.784000', '114322.787000', '114322.789000', '114322.792000', '114322.795000', '114322.797000', '114322.800000', '114322.803000', '114322.805000', '114322.808000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2946, 2808, 2713, 2642, 2647, 2664, 2672, 2612, 2644, 2619, 2644, 2665, 2654, 2688, 2711, 2713, 2696, 2717, 2726, 2701, 2699, 2681, 2639, 2671, 2674, 2671, 2695, 2700, 2668, 2662, 2693, 2695, 2663, 2692, 2710, 2700, 2716, 2740, 2691, 2713, 2685, 2689, 2657, 2691, 2684, 2671, 2669, 2663, 2708, 2679, 2696, 2682, 2691, 2653, 2705, 2705, 2710, 2674, 2717, 2712, 2702, 2715, 2725, 2683, 2669, 2666, 2649, 2690, 2733, 2749, 2709, 2707, 2691, 2694, 2726, 2709, 2714, 2728, 2756, 2722, 2708, 2719, 2728, 2717, 2703, 2758, 2702, 2689, 2691, 2724, 2698, 2682, 2711, 2689, 2637, 2684, 2677, 2644, 2668, 2671, 2696, 2661, 2681, 2647, 2666, 2662, 2693, 2664, 2679, 2655, 2678, 2685, 2692, 2674, 2697, 2661, 2701, 2700, 2701, 2676, 2702, 2703, 2688, 2693, 2707], 'WindowCenter': [651.0, 648.0, 647.0, 646.0, 646.0, 646.0, 645.0, 644.0, 644.0, 644.0, 644.0, 645.0, 645.0, 645.0, 646.0, 646.0, 647.0, 647.0, 646.0, 646.0, 647.0, 646.0, 646.0, 646.0, 645.0, 645.0, 645.0, 645.0, 645.0, 645.0, 646.0, 646.0, 645.0, 645.0, 645.0, 645.0, 646.0, 646.0, 646.0, 646.0, 645.0, 644.0, 644.0, 645.0, 645.0, 646.0, 646.0, 645.0, 645.0, 645.0, 645.0, 644.0, 645.0, 644.0, 644.0, 644.0, 645.0, 645.0, 646.0, 646.0, 645.0, 645.0, 645.0, 645.0, 645.0, 645.0, 645.0, 646.0, 646.0, 646.0, 645.0, 645.0, 645.0, 645.0, 645.0, 645.0, 646.0, 646.0, 647.0, 646.0, 645.0, 646.0, 645.0, 645.0, 645.0, 646.0, 645.0, 645.0, 644.0, 645.0, 644.0, 645.0, 645.0, 645.0, 645.0, 646.0, 646.0, 645.0, 645.0, 645.0, 645.0, 644.0, 645.0, 644.0, 644.0, 644.0, 645.0, 644.0, 645.0, 644.0, 644.0, 644.0, 644.0, 644.0, 645.0, 644.0, 645.0, 645.0, 644.0, 644.0, 644.0, 645.0, 646.0, 647.0, 646.0], 'WindowWidth': [1387.0, 1379.0, 1376.0, 1375.0, 1375.0, 1374.0, 1373.0, 1370.0, 1370.0, 1370.0, 1369.0, 1371.0, 1372.0, 1372.0, 1373.0, 1375.0, 1376.0, 1375.0, 1375.0, 1374.0, 1375.0, 1375.0, 1374.0, 1374.0, 1372.0, 1371.0, 1372.0, 1371.0, 1371.0, 1372.0, 1373.0, 1373.0, 1371.0, 1372.0, 1372.0, 1372.0, 1373.0, 1374.0, 1373.0, 1374.0, 1372.0, 1370.0, 1371.0, 1372.0, 1372.0, 1373.0, 1374.0, 1372.0, 1373.0, 1372.0, 1371.0, 1370.0, 1370.0, 1369.0, 1369.0, 1368.0, 1370.0, 1371.0, 1375.0, 1374.0, 1373.0, 1372.0, 1372.0, 1372.0, 1371.0, 1372.0, 1371.0, 1373.0, 1375.0, 1374.0, 1372.0, 1372.0, 1372.0, 1372.0, 1372.0, 1372.0, 1374.0, 1374.0, 1375.0, 1373.0, 1372.0, 1373.0, 1372.0, 1372.0, 1372.0, 1373.0, 1372.0, 1370.0, 1370.0, 1370.0, 1370.0, 1370.0, 1372.0, 1370.0, 1372.0, 1374.0, 1374.0, 1372.0, 1371.0, 1371.0, 1372.0, 1370.0, 1371.0, 1369.0, 1370.0, 1369.0, 1370.0, 1370.0, 1371.0, 1370.0, 1370.0, 1369.0, 1369.0, 1370.0, 1371.0, 1370.0, 1371.0, 1370.0, 1368.0, 1368.0, 1370.0, 1372.0, 1373.0, 1376.0, 1375.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0007929032258064517</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0035215892741935484</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>30.99300505487805</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1231267394308946</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.992826639186992</td></tr>
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<tr><td colspan=3>efc</td><td>0.5754</td></tr>
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<tr><td colspan=3>fber</td><td>374.8234</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.09828729736946151</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>0</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>0.0</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.348454864920409</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.106604388271932</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.5704853403325134</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.368274866156782</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00701828</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.01568887196481228</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.15982815623283386</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>1.9976533170782216</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>17.207</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>18.0304</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>86.025</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>29.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>347053.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>14.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>384.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>139.3905</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>1.007</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>258.8217</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>594.0574</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>562.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>117587.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>162.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1097.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>281.3289</td></tr>
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<tr><td colspan=3>tsnr</td><td>55.02897565672174</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |