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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-05_session-01_subject-8023_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" style="">
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Problem loading figure sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" target="_blank">sub-8023/figures/sub-8023_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8023/ses-01/func/sub-8023_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>5866a095b2f30f251bf9a3b28fc8b0b7</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>17:30:46.355000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999325, -0.0254469, 0.0265036, 0.0223288, 0.993464, 0.111941]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0470063</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1761, -9114, 4397, 535, -68, -271, 87, 24]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>215.534</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3961081504821777, 0.05353832617402077, 0.07002954185009003, 104.16842651367188], [0.06101468205451965, 2.3820555210113525, 0.26705774664878845, -105.55689239501953], [0.0635485127568245, -0.268405020236969, 2.3840672969818115, -57.11881637573242], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['173046.355000', '173047.555000', '173048.755000', '173049.955000', '173051.155000', '173052.355000', '173053.555000', '173054.755000', '173055.955000', '173057.155000', '173058.355000', '173059.555000', '173100.755000', '173101.955000', '173103.155000', '173104.355000', '173105.555000', '173106.755000', '173107.955000', '173109.155000', '173110.355000', '173111.555000', '173112.755000', '173113.955000', '173115.155000', '173116.355000', '173117.555000', '173118.755000', '173119.955000', '173121.155000', '173122.355000', '173123.555000', '173124.755000', '173125.955000', '173127.155000', '173128.355000', '173129.555000', '173130.755000', '173131.955000', '173133.155000', '173134.355000', '173135.555000', '173136.755000', '173137.955000', '173139.155000', '173140.355000', '173141.555000', '173142.755000', '173143.955000', '173145.155000', '173146.355000', '173147.555000', '173148.755000', '173149.955000', '173151.155000', '173152.355000', '173153.555000', '173154.755000', '173155.955000', '173157.155000', '173158.355000', '173159.555000', '173200.755000', '173201.955000', '173203.155000', '173204.355000', '173205.555000', '173206.755000', '173207.955000', '173209.155000', '173210.355000', '173211.555000', '173212.755000', '173213.955000', '173215.155000', '173216.355000', '173217.555000', '173218.755000', '173219.955000', '173221.155000', '173222.355000', '173223.555000', '173224.755000', '173225.955000', '173227.155000', '173228.355000', '173229.555000', '173230.755000', '173231.955000', '173233.155000', '173234.355000', '173235.555000', '173236.755000', '173237.955000', '173239.155000', '173240.355000', '173241.555000', '173242.755000', '173243.955000', '173245.155000', '173246.355000', '173247.555000', '173248.755000', '173249.955000', '173251.155000', '173252.355000', '173253.555000', '173254.755000', '173255.955000', '173257.155000', '173258.355000', '173259.555000', '173300.755000', '173301.955000', '173303.155000', '173304.355000', '173305.555000', '173306.755000', '173307.955000', '173309.155000', '173310.355000', '173311.555000', '173312.755000', '173313.955000', '173315.155000'], 'ContentTime': ['173122.890000', '173122.893000', '173122.896000', '173122.898000', '173122.911000', '173122.913000', '173122.916000', '173122.918000', '173122.921000', '173122.923000', '173122.926000', '173122.928000', '173122.931000', '173122.947000', '173122.949000', '173122.952000', '173122.954000', '173122.957000', '173122.959000', '173122.962000', '173122.964000', '173122.967000', '173122.976000', '173122.979000', '173122.981000', '173122.984000', '173122.986000', '173122.989000', '173122.991000', '173122.994000', '173142.885000', '173142.888000', '173142.891000', '173142.893000', '173142.896000', '173142.898000', '173142.905000', '173142.907000', '173142.910000', '173142.912000', '173142.915000', '173142.918000', '173142.920000', '173142.923000', '173142.925000', '173142.928000', '173142.930000', '173222.885000', '173222.888000', '173222.891000', '173222.893000', '173222.896000', '173222.898000', '173222.901000', '173222.904000', '173222.906000', '173222.909000', '173222.911000', '173222.914000', '173222.917000', '173222.919000', '173222.922000', '173222.924000', '173222.927000', '173222.930000', '173222.932000', '173222.935000', '173222.937000', '173222.940000', '173222.942000', '173222.945000', '173222.947000', '173222.950000', '173222.952000', '173222.955000', '173222.957000', '173222.960000', '173222.963000', '173222.965000', '173222.968000', '173302.886000', '173302.888000', '173302.891000', '173302.894000', '173302.896000', '173302.899000', '173302.901000', '173302.904000', '173302.906000', '173302.909000', '173302.911000', '173302.914000', '173302.917000', '173302.919000', '173302.922000', '173302.924000', '173302.927000', '173302.929000', '173302.932000', '173302.934000', '173302.937000', '173302.939000', '173302.942000', '173302.945000', '173302.947000', '173302.950000', '173302.952000', '173302.955000', '173302.957000', '173302.960000', '173302.962000', '173302.965000', '173302.967000', '173316.373000', '173316.376000', '173316.379000', '173316.381000', '173316.384000', '173316.386000', '173316.389000', '173316.392000', '173316.394000', '173316.397000', '173316.399000', '173316.402000'], 'InstanceCreationTime': ['173122.890000', '173122.893000', '173122.896000', '173122.898000', '173122.911000', '173122.913000', '173122.916000', '173122.918000', '173122.921000', '173122.923000', '173122.926000', '173122.928000', '173122.931000', '173122.947000', '173122.949000', '173122.952000', '173122.954000', '173122.957000', '173122.959000', '173122.962000', '173122.964000', '173122.967000', '173122.976000', '173122.979000', '173122.981000', '173122.984000', '173122.986000', '173122.989000', '173122.991000', '173122.994000', '173142.885000', '173142.888000', '173142.891000', '173142.893000', '173142.896000', '173142.898000', '173142.905000', '173142.907000', '173142.910000', '173142.912000', '173142.915000', '173142.918000', '173142.920000', '173142.923000', '173142.925000', '173142.928000', '173142.930000', '173222.885000', '173222.888000', '173222.891000', '173222.893000', '173222.896000', '173222.898000', '173222.901000', '173222.904000', '173222.906000', '173222.909000', '173222.911000', '173222.914000', '173222.917000', '173222.919000', '173222.922000', '173222.924000', '173222.927000', '173222.930000', '173222.932000', '173222.935000', '173222.937000', '173222.940000', '173222.942000', '173222.945000', '173222.947000', '173222.950000', '173222.952000', '173222.955000', '173222.957000', '173222.960000', '173222.963000', '173222.965000', '173222.968000', '173302.886000', '173302.888000', '173302.891000', '173302.894000', '173302.896000', '173302.899000', '173302.901000', '173302.904000', '173302.906000', '173302.909000', '173302.911000', '173302.914000', '173302.917000', '173302.919000', '173302.922000', '173302.924000', '173302.927000', '173302.929000', '173302.932000', '173302.934000', '173302.937000', '173302.939000', '173302.942000', '173302.945000', '173302.947000', '173302.950000', '173302.952000', '173302.955000', '173302.957000', '173302.960000', '173302.962000', '173302.965000', '173302.967000', '173316.373000', '173316.376000', '173316.379000', '173316.381000', '173316.384000', '173316.386000', '173316.389000', '173316.392000', '173316.394000', '173316.397000', '173316.399000', '173316.402000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1563, 1616, 1519, 1672, 1587, 1811, 1739, 1771, 1915, 2049, 1664, 2003, 1705, 1553, 1601, 1599, 1762, 1539, 1608, 1529, 1532, 1509, 1530, 1712, 1525, 1539, 1537, 1544, 1565, 1529, 1585, 1692, 1516, 1714, 1547, 1529, 1540, 1555, 1545, 1546, 1809, 1577, 1553, 1875, 1601, 1531, 1645, 1520, 1557, 1601, 1645, 1687, 1764, 1626, 1592, 1618, 1731, 1561, 1521, 1509, 1517, 1505, 1555, 1515, 1528, 1537, 1544, 1660, 1574, 1528, 1667, 1505, 1608, 1723, 1882, 1636, 1535, 1606, 1759, 1697, 1719, 1570, 1719, 1602, 1674, 1718, 1534, 1521, 1667, 1517, 1757, 1589, 1543, 1570, 1762, 1851, 1549, 1602, 1554, 1522, 1563, 1509, 1522, 1504, 1501, 1499, 1510, 1510, 1504, 1515, 1517, 1517, 1528, 1653, 1800, 1854, 1692, 1606, 1723, 1521, 1675, 2002, 1649, 1822, 1889], 'WindowCenter': [540.0, 539.0, 536.0, 539.0, 538.0, 542.0, 542.0, 543.0, 545.0, 546.0, 541.0, 546.0, 541.0, 539.0, 539.0, 538.0, 540.0, 537.0, 538.0, 537.0, 537.0, 537.0, 537.0, 540.0, 537.0, 537.0, 537.0, 537.0, 537.0, 537.0, 538.0, 540.0, 537.0, 540.0, 538.0, 537.0, 538.0, 539.0, 538.0, 538.0, 543.0, 539.0, 538.0, 544.0, 540.0, 538.0, 539.0, 536.0, 537.0, 538.0, 539.0, 539.0, 541.0, 538.0, 538.0, 540.0, 542.0, 538.0, 537.0, 537.0, 537.0, 536.0, 538.0, 537.0, 537.0, 537.0, 537.0, 540.0, 539.0, 537.0, 539.0, 536.0, 538.0, 542.0, 544.0, 541.0, 538.0, 540.0, 542.0, 541.0, 543.0, 541.0, 542.0, 539.0, 539.0, 540.0, 537.0, 537.0, 540.0, 537.0, 541.0, 539.0, 538.0, 539.0, 543.0, 544.0, 538.0, 539.0, 538.0, 537.0, 536.0, 534.0, 533.0, 531.0, 532.0, 532.0, 533.0, 533.0, 533.0, 533.0, 534.0, 536.0, 537.0, 539.0, 542.0, 544.0, 541.0, 539.0, 541.0, 538.0, 542.0, 546.0, 542.0, 545.0, 545.0], 'WindowWidth': [1144.0, 1141.0, 1136.0, 1140.0, 1139.0, 1147.0, 1147.0, 1148.0, 1152.0, 1153.0, 1146.0, 1153.0, 1146.0, 1141.0, 1140.0, 1140.0, 1142.0, 1137.0, 1139.0, 1137.0, 1138.0, 1137.0, 1138.0, 1142.0, 1136.0, 1137.0, 1137.0, 1137.0, 1138.0, 1137.0, 1140.0, 1142.0, 1138.0, 1143.0, 1139.0, 1138.0, 1139.0, 1141.0, 1140.0, 1141.0, 1147.0, 1141.0, 1140.0, 1149.0, 1143.0, 1139.0, 1141.0, 1136.0, 1136.0, 1139.0, 1140.0, 1141.0, 1144.0, 1140.0, 1140.0, 1143.0, 1145.0, 1140.0, 1137.0, 1137.0, 1136.0, 1135.0, 1138.0, 1137.0, 1137.0, 1138.0, 1137.0, 1142.0, 1140.0, 1138.0, 1140.0, 1135.0, 1140.0, 1145.0, 1150.0, 1144.0, 1140.0, 1142.0, 1145.0, 1145.0, 1148.0, 1145.0, 1146.0, 1141.0, 1140.0, 1142.0, 1138.0, 1138.0, 1142.0, 1137.0, 1143.0, 1140.0, 1139.0, 1141.0, 1148.0, 1149.0, 1140.0, 1141.0, 1139.0, 1137.0, 1135.0, 1130.0, 1127.0, 1125.0, 1126.0, 1127.0, 1129.0, 1128.0, 1129.0, 1129.0, 1132.0, 1134.0, 1137.0, 1141.0, 1146.0, 1150.0, 1145.0, 1142.0, 1145.0, 1140.0, 1146.0, 1154.0, 1146.0, 1151.0, 1151.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.001953951612903226</td></tr>
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<tr><td colspan=3>aqi</td><td>0.005750261774193549</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>39.401069920569114</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.315989572520326</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0220323869918697</td></tr>
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<tr><td colspan=3>efc</td><td>0.5013</td></tr>
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<tr><td colspan=3>fber</td><td>822.5984</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.11754136011791792</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>6</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>4.838709677419355</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>2.7359026741835497</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>2.5716102602130677</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>2.844527039931302</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>2.7915707224062793</td></tr>
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<tr><td colspan=3>gcor</td><td>0.027078</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.009120664559304714</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.05997983366250992</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.418388510916139</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>24.474</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>7.4011</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>40.7642</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>18.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>370747.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>157.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>65.6908</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.4411</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>181.6547</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>518.0138</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>512.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>93893.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>133.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>882.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>211.7101</td></tr>
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<tr><td colspan=3>tsnr</td><td>52.012088901828974</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |