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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-04_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" style="width: 100%" />
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8022/ses-01/func/sub-8022_ses-01_task-RDMmotion_run-04_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>aeb870fadb341c8c3f66e2d40ba61002</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>15:31:48.747500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.991057, 0.0969248, 0.0917156, -0.0828731, 0.98577, -0.146252]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-04</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0508446</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-04</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>13</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1772, -9082, 4374, 419, -100, -83, 116, 0]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>242.525</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.376284122467041, -0.1987069845199585, 0.2510063946247101, 108.60192108154297], [-0.23239925503730774, 2.363607406616211, -0.32962509989738464, -75.3448486328125], [0.21990905702114105, 0.3506736159324646, 2.3639676570892334, -94.71685791015625], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['153148.747500', '153149.947500', '153151.147500', '153152.347500', '153153.547500', '153154.747500', '153155.947500', '153157.147500', '153158.347500', '153159.547500', '153200.747500', '153201.947500', '153203.147500', '153204.347500', '153205.547500', '153206.747500', '153207.947500', '153209.147500', '153210.347500', '153211.547500', '153212.747500', '153213.947500', '153215.147500', '153216.347500', '153217.547500', '153218.747500', '153219.947500', '153221.147500', '153222.347500', '153223.547500', '153224.747500', '153225.947500', '153227.147500', '153228.347500', '153229.547500', '153230.747500', '153231.947500', '153233.147500', '153234.347500', '153235.547500', '153236.747500', '153237.947500', '153239.147500', '153240.347500', '153241.547500', '153242.747500', '153243.947500', '153245.147500', '153246.347500', '153247.547500', '153248.747500', '153249.947500', '153251.147500', '153252.347500', '153253.547500', '153254.747500', '153255.947500', '153257.147500', '153258.347500', '153259.547500', '153300.747500', '153301.947500', '153303.147500', '153304.347500', '153305.547500', '153306.747500', '153307.947500', '153309.147500', '153310.347500', '153311.547500', '153312.747500', '153313.947500', '153315.147500', '153316.347500', '153317.547500', '153318.747500', '153319.947500', '153321.147500', '153322.347500', '153323.547500', '153324.747500', '153325.947500', '153327.147500', '153328.347500', '153329.547500', '153330.747500', '153331.947500', '153333.147500', '153334.347500', '153335.547500', '153336.747500', '153337.947500', '153339.147500', '153340.347500', '153341.547500', '153342.747500', '153343.947500', '153345.147500', '153346.347500', '153347.547500', '153348.747500', '153349.947500', '153351.147500', '153352.347500', '153353.547500', '153354.747500', '153355.947500', '153357.147500', '153358.347500', '153359.547500', '153400.747500', '153401.947500', '153403.147500', '153404.347500', '153405.547500', '153406.747500', '153407.947500', '153409.147500', '153410.347500', '153411.547500', '153412.747500', '153413.947500', '153415.147500', '153416.347500', '153417.547500'], 'ContentTime': ['153151.877000', '153151.880000', '153231.874000', '153231.876000', '153231.879000', '153231.882000', '153231.884000', '153231.887000', '153231.890000', '153231.892000', '153231.895000', '153231.898000', '153231.900000', '153231.903000', '153231.915000', '153231.918000', '153231.921000', '153231.923000', '153231.926000', '153231.928000', '153231.931000', '153231.934000', '153231.936000', '153231.939000', '153231.941000', '153231.944000', '153231.947000', '153231.951000', '153231.953000', '153231.956000', '153231.958000', '153231.961000', '153231.964000', '153231.966000', '153231.969000', '153311.873000', '153311.876000', '153311.879000', '153311.882000', '153311.884000', '153311.887000', '153311.889000', '153311.892000', '153311.895000', '153311.897000', '153311.900000', '153311.902000', '153311.905000', '153311.908000', '153311.910000', '153311.913000', '153311.915000', '153311.918000', '153311.921000', '153311.923000', '153311.926000', '153311.928000', '153311.931000', '153311.933000', '153311.936000', '153311.938000', '153311.941000', '153311.943000', '153311.946000', '153311.948000', '153311.951000', '153311.954000', '153311.956000', '153351.873000', '153351.876000', '153351.879000', '153351.881000', '153351.884000', '153351.886000', '153351.889000', '153351.892000', '153351.894000', '153351.897000', '153351.899000', '153351.902000', '153351.904000', '153351.907000', '153351.910000', '153351.912000', '153351.915000', '153351.917000', '153351.920000', '153351.922000', '153351.925000', '153351.928000', '153351.930000', '153351.933000', '153351.935000', '153351.938000', '153351.941000', '153351.943000', '153351.946000', '153351.948000', '153351.955000', '153351.957000', '153351.960000', '153351.962000', '153419.363000', '153419.366000', '153419.369000', '153419.372000', '153419.374000', '153419.377000', '153419.380000', '153419.382000', '153419.385000', '153419.388000', '153419.390000', '153419.393000', '153419.395000', '153419.398000', '153419.400000', '153419.403000', '153419.406000', '153419.408000', '153419.411000', '153419.414000', '153419.416000', '153419.419000', '153419.422000'], 'InstanceCreationTime': ['153151.877000', '153151.880000', '153231.874000', '153231.876000', '153231.879000', '153231.882000', '153231.884000', '153231.887000', '153231.890000', '153231.892000', '153231.895000', '153231.898000', '153231.900000', '153231.903000', '153231.915000', '153231.918000', '153231.921000', '153231.923000', '153231.926000', '153231.928000', '153231.931000', '153231.934000', '153231.936000', '153231.939000', '153231.941000', '153231.944000', '153231.947000', '153231.951000', '153231.953000', '153231.956000', '153231.958000', '153231.961000', '153231.964000', '153231.966000', '153231.969000', '153311.873000', '153311.876000', '153311.879000', '153311.882000', '153311.884000', '153311.887000', '153311.889000', '153311.892000', '153311.895000', '153311.897000', '153311.900000', '153311.902000', '153311.905000', '153311.908000', '153311.910000', '153311.913000', '153311.915000', '153311.918000', '153311.921000', '153311.923000', '153311.926000', '153311.928000', '153311.931000', '153311.933000', '153311.936000', '153311.938000', '153311.941000', '153311.943000', '153311.946000', '153311.948000', '153311.951000', '153311.954000', '153311.956000', '153351.873000', '153351.876000', '153351.879000', '153351.881000', '153351.884000', '153351.886000', '153351.889000', '153351.892000', '153351.894000', '153351.897000', '153351.899000', '153351.902000', '153351.904000', '153351.907000', '153351.910000', '153351.912000', '153351.915000', '153351.917000', '153351.920000', '153351.922000', '153351.925000', '153351.928000', '153351.930000', '153351.933000', '153351.935000', '153351.938000', '153351.941000', '153351.943000', '153351.946000', '153351.948000', '153351.955000', '153351.957000', '153351.960000', '153351.962000', '153419.363000', '153419.366000', '153419.369000', '153419.372000', '153419.374000', '153419.377000', '153419.380000', '153419.382000', '153419.385000', '153419.388000', '153419.390000', '153419.393000', '153419.395000', '153419.398000', '153419.400000', '153419.403000', '153419.406000', '153419.408000', '153419.411000', '153419.414000', '153419.416000', '153419.419000', '153419.422000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2462, 2188, 2142, 2108, 2115, 2094, 2111, 2110, 2122, 2058, 2043, 2121, 2085, 2099, 2106, 2086, 2092, 2132, 2074, 2094, 2098, 2108, 2094, 2078, 2082, 2090, 2131, 2087, 2109, 2161, 2142, 2126, 2136, 2130, 2121, 2112, 2190, 2175, 2156, 2153, 2122, 2123, 2138, 2119, 2147, 2119, 2144, 2139, 2121, 2116, 2112, 2155, 2169, 2107, 2130, 2164, 2133, 2164, 2163, 2120, 2100, 2135, 2122, 2168, 2141, 2117, 2151, 2108, 2122, 2147, 2108, 2146, 2113, 2105, 2156, 2115, 2120, 2130, 2164, 2246, 2120, 2194, 2160, 2139, 2239, 2186, 2131, 2245, 2171, 2150, 2190, 2200, 2160, 2128, 2210, 2202, 2147, 2221, 2217, 2143, 2240, 2195, 2154, 2202, 2140, 2196, 2197, 2155, 2206, 2137, 2204, 2136, 2163, 2272, 2221, 2215, 2208, 2252, 2168, 2159, 2228, 2160, 2164, 2208, 2186], 'WindowCenter': [590.0, 585.0, 582.0, 581.0, 580.0, 580.0, 580.0, 579.0, 578.0, 577.0, 576.0, 577.0, 577.0, 579.0, 579.0, 579.0, 580.0, 581.0, 580.0, 581.0, 580.0, 581.0, 581.0, 580.0, 580.0, 581.0, 582.0, 581.0, 583.0, 585.0, 585.0, 585.0, 584.0, 584.0, 584.0, 585.0, 586.0, 586.0, 585.0, 584.0, 584.0, 584.0, 583.0, 583.0, 584.0, 584.0, 584.0, 584.0, 583.0, 584.0, 584.0, 585.0, 584.0, 583.0, 584.0, 584.0, 585.0, 586.0, 585.0, 584.0, 584.0, 584.0, 585.0, 586.0, 585.0, 584.0, 583.0, 582.0, 582.0, 583.0, 583.0, 584.0, 583.0, 583.0, 583.0, 582.0, 583.0, 583.0, 582.0, 584.0, 582.0, 583.0, 583.0, 583.0, 583.0, 583.0, 583.0, 583.0, 583.0, 583.0, 584.0, 583.0, 581.0, 579.0, 581.0, 580.0, 580.0, 582.0, 582.0, 582.0, 583.0, 583.0, 583.0, 583.0, 582.0, 583.0, 583.0, 582.0, 582.0, 582.0, 583.0, 581.0, 582.0, 585.0, 584.0, 584.0, 584.0, 583.0, 581.0, 581.0, 583.0, 583.0, 583.0, 583.0, 583.0], 'WindowWidth': [1259.0, 1248.0, 1242.0, 1238.0, 1236.0, 1237.0, 1237.0, 1235.0, 1232.0, 1229.0, 1228.0, 1231.0, 1230.0, 1234.0, 1234.0, 1235.0, 1236.0, 1238.0, 1238.0, 1239.0, 1238.0, 1238.0, 1238.0, 1237.0, 1238.0, 1238.0, 1240.0, 1240.0, 1242.0, 1247.0, 1247.0, 1248.0, 1246.0, 1246.0, 1246.0, 1248.0, 1250.0, 1249.0, 1248.0, 1245.0, 1244.0, 1244.0, 1243.0, 1244.0, 1245.0, 1245.0, 1246.0, 1245.0, 1243.0, 1244.0, 1245.0, 1247.0, 1246.0, 1243.0, 1245.0, 1246.0, 1247.0, 1249.0, 1247.0, 1245.0, 1245.0, 1245.0, 1248.0, 1250.0, 1248.0, 1245.0, 1243.0, 1242.0, 1242.0, 1243.0, 1243.0, 1245.0, 1244.0, 1243.0, 1242.0, 1241.0, 1242.0, 1242.0, 1241.0, 1244.0, 1241.0, 1243.0, 1243.0, 1244.0, 1243.0, 1243.0, 1242.0, 1243.0, 1243.0, 1243.0, 1245.0, 1242.0, 1239.0, 1234.0, 1237.0, 1236.0, 1235.0, 1239.0, 1239.0, 1241.0, 1242.0, 1242.0, 1242.0, 1242.0, 1241.0, 1242.0, 1241.0, 1240.0, 1241.0, 1240.0, 1241.0, 1238.0, 1241.0, 1246.0, 1244.0, 1243.0, 1243.0, 1243.0, 1238.0, 1238.0, 1242.0, 1241.0, 1241.0, 1242.0, 1242.0]}, 'slices': {}}</td></tr>
</table>
</div>
</div>
</div>
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<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.008669600000000003</td></tr>
<tr><td colspan=3>aqi</td><td>0.006497051919999999</td></tr>
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>34.74990535580645</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.2211838852419354</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.073673200725806</td></tr>
<tr><td colspan=3>efc</td><td>0.5507</td></tr>
<tr><td colspan=3>fber</td><td>472.0891</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.15454389498905755</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>27</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>21.6</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.1976597446393566</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.0993600280168727</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.179590170922213</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.3140290349789843</td></tr>
<tr><td colspan=3>gcor</td><td>0.0225809</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.03177352994680405</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.11494973301887512</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>125</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.0756855035893795</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>27.6312</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>12.9639</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>67.2897</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>358672.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>14.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>290.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>110.8999</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>1.0494</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>221.5423</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>545.0612</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>516.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>105968.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>173.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1001.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>248.5914</td></tr>
<tr><td colspan=3>tsnr</td><td>45.957763755111955</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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Record specific artifacts
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<fieldset id="qcartifacts-group" class="form-group">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>