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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-02_session-01_subject-8022_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" style="">
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Problem loading figure sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" target="_blank">sub-8022/figures/sub-8022_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8022/ses-01/func/sub-8022_ses-01_task-RDMmotion_run-02_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>baaa4a6a2e2c856697b826886d5d30a1</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>15:08:2.262500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.991057, 0.0969248, 0.0917156, -0.0828731, 0.98577, -0.146252]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-02</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0508446</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-02</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>9</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1772, -9082, 4374, 419, -100, -83, 116, 0]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>242.525</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.376284122467041, -0.1987069845199585, 0.2510063946247101, 108.60192108154297], [-0.23239925503730774, 2.363607406616211, -0.32962509989738464, -75.3448486328125], [0.21990905702114105, 0.3506736159324646, 2.3639676570892334, -94.71685791015625], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['150802.262500', '150803.462500', '150804.662500', '150805.862500', '150807.062500', '150808.262500', '150809.462500', '150810.662500', '150811.862500', '150813.062500', '150814.262500', '150815.462500', '150816.662500', '150817.862500', '150819.062500', '150820.262500', '150821.462500', '150822.662500', '150823.862500', '150825.062500', '150826.262500', '150827.462500', '150828.662500', '150829.862500', '150831.062500', '150832.262500', '150833.462500', '150834.662500', '150835.862500', '150837.062500', '150838.262500', '150839.462500', '150840.662500', '150841.862500', '150843.062500', '150844.262500', '150845.462500', '150846.662500', '150847.862500', '150849.062500', '150850.262500', '150851.462500', '150852.662500', '150853.862500', '150855.062500', '150856.262500', '150857.462500', '150858.662500', '150859.862500', '150901.062500', '150902.262500', '150903.462500', '150904.662500', '150905.862500', '150907.062500', '150908.262500', '150909.462500', '150910.662500', '150911.862500', '150913.062500', '150914.262500', '150915.462500', '150916.662500', '150917.862500', '150919.062500', '150920.262500', '150921.462500', '150922.662500', '150923.862500', '150925.062500', '150926.262500', '150927.462500', '150928.662500', '150929.862500', '150931.062500', '150932.262500', '150933.462500', '150934.662500', '150935.862500', '150937.062500', '150938.262500', '150939.462500', '150940.662500', '150941.862500', '150943.062500', '150944.262500', '150945.462500', '150946.662500', '150947.862500', '150949.062500', '150950.262500', '150951.462500', '150952.662500', '150953.862500', '150955.062500', '150956.262500', '150957.462500', '150958.662500', '150959.862500', '151001.062500', '151002.262500', '151003.462500', '151004.662500', '151005.862500', '151007.062500', '151008.262500', '151009.462500', '151010.662500', '151011.862500', '151013.062500', '151014.262500', '151015.462500', '151016.662500', '151017.862500', '151019.062500', '151020.262500', '151021.462500', '151022.662500', '151023.862500', '151025.062500', '151026.262500', '151027.462500', '151028.662500', '151029.862500', '151031.062500'], 'ContentTime': ['150843.878000', '150843.882000', '150843.884000', '150843.887000', '150843.898000', '150843.900000', '150843.902000', '150843.905000', '150843.908000', '150843.910000', '150843.913000', '150843.915000', '150843.918000', '150843.920000', '150843.923000', '150843.925000', '150843.928000', '150843.930000', '150843.933000', '150843.935000', '150843.938000', '150843.945000', '150843.947000', '150843.950000', '150843.952000', '150843.955000', '150843.958000', '150843.960000', '150843.963000', '150843.965000', '150843.968000', '150843.971000', '150843.973000', '150843.976000', '150923.873000', '150923.876000', '150923.889000', '150923.892000', '150923.894000', '150923.897000', '150923.900000', '150923.902000', '150923.905000', '150923.907000', '150923.910000', '150923.912000', '150923.915000', '150923.918000', '150923.920000', '150923.923000', '150923.925000', '150923.928000', '150923.930000', '150923.933000', '150923.935000', '150923.938000', '150923.940000', '150923.943000', '150923.946000', '150923.948000', '150923.951000', '150923.954000', '150923.956000', '150923.959000', '150923.961000', '150923.964000', '150923.966000', '151003.874000', '151003.877000', '151003.880000', '151003.882000', '151003.885000', '151003.887000', '151003.890000', '151003.892000', '151003.895000', '151003.898000', '151003.900000', '151003.903000', '151003.905000', '151003.908000', '151003.910000', '151003.913000', '151003.915000', '151003.918000', '151003.921000', '151003.923000', '151003.926000', '151003.935000', '151003.937000', '151003.940000', '151003.958000', '151003.960000', '151003.967000', '151003.970000', '151003.973000', '151003.975000', '151003.978000', '151003.980000', '151003.983000', '151003.986000', '151032.454000', '151032.457000', '151032.460000', '151032.462000', '151032.465000', '151032.468000', '151032.470000', '151032.473000', '151032.475000', '151032.478000', '151032.480000', '151032.483000', '151032.486000', '151032.488000', '151032.491000', '151032.493000', '151032.496000', '151032.498000', '151032.501000', '151032.503000', '151032.506000', '151032.509000', '151032.511000', '151032.514000'], 'InstanceCreationTime': ['150843.878000', '150843.882000', '150843.884000', '150843.887000', '150843.898000', '150843.900000', '150843.902000', '150843.905000', '150843.908000', '150843.910000', '150843.913000', '150843.915000', '150843.918000', '150843.920000', '150843.923000', '150843.925000', '150843.928000', '150843.930000', '150843.933000', '150843.935000', '150843.938000', '150843.945000', '150843.947000', '150843.950000', '150843.952000', '150843.955000', '150843.958000', '150843.960000', '150843.963000', '150843.965000', '150843.968000', '150843.971000', '150843.973000', '150843.976000', '150923.873000', '150923.876000', '150923.889000', '150923.892000', '150923.894000', '150923.897000', '150923.900000', '150923.902000', '150923.905000', '150923.907000', '150923.910000', '150923.912000', '150923.915000', '150923.918000', '150923.920000', '150923.923000', '150923.925000', '150923.928000', '150923.930000', '150923.933000', '150923.935000', '150923.938000', '150923.940000', '150923.943000', '150923.946000', '150923.948000', '150923.951000', '150923.954000', '150923.956000', '150923.959000', '150923.961000', '150923.964000', '150923.966000', '151003.874000', '151003.877000', '151003.880000', '151003.882000', '151003.885000', '151003.887000', '151003.890000', '151003.892000', '151003.895000', '151003.898000', '151003.900000', '151003.903000', '151003.905000', '151003.908000', '151003.910000', '151003.913000', '151003.915000', '151003.918000', '151003.921000', '151003.923000', '151003.926000', '151003.935000', '151003.937000', '151003.940000', '151003.958000', '151003.960000', '151003.967000', '151003.970000', '151003.973000', '151003.975000', '151003.978000', '151003.980000', '151003.983000', '151003.986000', '151032.454000', '151032.457000', '151032.460000', '151032.462000', '151032.465000', '151032.468000', '151032.470000', '151032.473000', '151032.475000', '151032.478000', '151032.480000', '151032.483000', '151032.486000', '151032.488000', '151032.491000', '151032.493000', '151032.496000', '151032.498000', '151032.501000', '151032.503000', '151032.506000', '151032.509000', '151032.511000', '151032.514000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2140, 2145, 2048, 2025, 2002, 2001, 1997, 2007, 2063, 2096, 2033, 2057, 2056, 2037, 2048, 2053, 2021, 2042, 2034, 2029, 2047, 2025, 2022, 2032, 2038, 2027, 2037, 2038, 2026, 2048, 2037, 2035, 2078, 2123, 2091, 2080, 2067, 2061, 2079, 2066, 2081, 2088, 2061, 2073, 2051, 2056, 2055, 2061, 2038, 2054, 2036, 2064, 2132, 2190, 2080, 2072, 2053, 2053, 2047, 2042, 2057, 2063, 2060, 2061, 2049, 2060, 2047, 2051, 2056, 2065, 2055, 2050, 2058, 2057, 2064, 2056, 2051, 2064, 2060, 2051, 2058, 2042, 2056, 2063, 2053, 2060, 2050, 2054, 2050, 2043, 2050, 2052, 2046, 2050, 2046, 2063, 2069, 2065, 2060, 2046, 2059, 2056, 2058, 2056, 2052, 2037, 2064, 2056, 2058, 2052, 2054, 2050, 2051, 2043, 2058, 2049, 2052, 2064, 2058, 2068, 2071, 2065, 2066, 2095, 2064], 'WindowCenter': [587.0, 586.0, 584.0, 581.0, 579.0, 580.0, 580.0, 579.0, 581.0, 582.0, 581.0, 581.0, 582.0, 582.0, 582.0, 582.0, 582.0, 581.0, 581.0, 581.0, 581.0, 581.0, 582.0, 582.0, 582.0, 582.0, 582.0, 582.0, 582.0, 583.0, 583.0, 583.0, 584.0, 584.0, 584.0, 584.0, 584.0, 585.0, 585.0, 584.0, 584.0, 584.0, 584.0, 584.0, 584.0, 584.0, 583.0, 583.0, 583.0, 583.0, 583.0, 584.0, 582.0, 588.0, 586.0, 586.0, 585.0, 585.0, 585.0, 585.0, 584.0, 584.0, 584.0, 584.0, 585.0, 584.0, 583.0, 584.0, 584.0, 585.0, 585.0, 586.0, 585.0, 583.0, 583.0, 583.0, 583.0, 584.0, 585.0, 586.0, 585.0, 585.0, 584.0, 584.0, 584.0, 584.0, 585.0, 585.0, 584.0, 584.0, 584.0, 584.0, 584.0, 584.0, 584.0, 584.0, 585.0, 584.0, 585.0, 584.0, 584.0, 584.0, 583.0, 583.0, 583.0, 583.0, 583.0, 583.0, 584.0, 584.0, 583.0, 583.0, 583.0, 583.0, 583.0, 583.0, 584.0, 584.0, 584.0, 586.0, 585.0, 586.0, 585.0, 586.0, 585.0], 'WindowWidth': [1254.0, 1251.0, 1245.0, 1240.0, 1235.0, 1237.0, 1237.0, 1235.0, 1240.0, 1240.0, 1238.0, 1240.0, 1240.0, 1241.0, 1240.0, 1241.0, 1240.0, 1239.0, 1239.0, 1238.0, 1239.0, 1239.0, 1240.0, 1241.0, 1242.0, 1241.0, 1240.0, 1241.0, 1240.0, 1242.0, 1243.0, 1244.0, 1245.0, 1245.0, 1246.0, 1245.0, 1246.0, 1247.0, 1246.0, 1246.0, 1245.0, 1246.0, 1245.0, 1245.0, 1245.0, 1244.0, 1243.0, 1243.0, 1243.0, 1243.0, 1243.0, 1245.0, 1241.0, 1255.0, 1250.0, 1250.0, 1248.0, 1248.0, 1247.0, 1247.0, 1246.0, 1247.0, 1247.0, 1247.0, 1247.0, 1246.0, 1244.0, 1245.0, 1246.0, 1248.0, 1249.0, 1249.0, 1248.0, 1244.0, 1244.0, 1244.0, 1244.0, 1246.0, 1248.0, 1249.0, 1248.0, 1246.0, 1245.0, 1244.0, 1245.0, 1246.0, 1247.0, 1247.0, 1246.0, 1245.0, 1245.0, 1246.0, 1245.0, 1246.0, 1246.0, 1246.0, 1247.0, 1247.0, 1247.0, 1246.0, 1245.0, 1244.0, 1243.0, 1243.0, 1243.0, 1243.0, 1244.0, 1244.0, 1245.0, 1245.0, 1244.0, 1244.0, 1244.0, 1243.0, 1243.0, 1243.0, 1244.0, 1246.0, 1247.0, 1249.0, 1248.0, 1249.0, 1248.0, 1250.0, 1248.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.004785200000000001</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0118945632</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>34.84601719169355</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.0404389645161292</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9490326210483871</td></tr>
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<tr><td colspan=3>efc</td><td>0.5498</td></tr>
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<tr><td colspan=3>fber</td><td>474.2278</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.15013025058349222</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>21</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>16.8</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.2127210544518268</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.120988843378264</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.189391118878108</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.3277832010991095</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00683003</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.03230283781886101</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.11311598122119904</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>125</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.0835919758898345</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>27.7097</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>13.0943</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>66.8567</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>358733.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>287.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>110.0778</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.9679</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>223.1732</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>547.6881</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>519.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>105907.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>173.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1004.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>249.0879</td></tr>
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<tr><td colspan=3>tsnr</td><td>40.04439180716872</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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|
|
<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
|
|
<div class="card-header m-0">
|
|
Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |