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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-04_session-01_subject-8021_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" style="width: 100%" />
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg</a></small>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8021/ses-01/func/sub-8021_ses-01_task-RDMmotion_run-04_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>1c3280a8ad5bd5d7599c74d5c7d41c7f</td></tr>
</table>
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>13:28:1.187500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.992185, 0.116564, 0.0445073, -0.104633, 0.971625, -0.212124]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-04</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0437109</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-04</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>13</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1753, -9105, 4379, 399, -75, -372, -126, -1]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>218.152</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3789901733398438, -0.25088149309158325, 0.16312886774539948, 113.1288833618164], [-0.2794884443283081, 2.3296921253204346, -0.4939415156841278, -67.01716613769531], [0.10671635717153549, 0.5086144208908081, 2.342949151992798, -94.04196166992188], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['132801.187500', '132802.387500', '132803.587500', '132804.787500', '132805.987500', '132807.187500', '132808.387500', '132809.587500', '132810.787500', '132811.987500', '132813.187500', '132814.387500', '132815.587500', '132816.787500', '132817.987500', '132819.187500', '132820.387500', '132821.587500', '132822.787500', '132823.987500', '132825.187500', '132826.387500', '132827.587500', 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'132938.387500', '132939.587500', '132940.787500', '132941.987500', '132943.187500', '132944.387500', '132945.587500', '132946.787500', '132947.987500', '132949.187500', '132950.387500', '132951.587500', '132952.787500', '132953.987500', '132955.187500', '132956.387500', '132957.587500', '132958.787500', '132959.987500', '133001.187500', '133002.387500', '133003.587500', '133004.787500', '133005.987500', '133007.187500', '133008.387500', '133009.587500', '133010.787500', '133011.987500', '133013.187500', '133014.387500', '133015.587500', '133016.787500', '133017.987500', '133019.187500', '133020.387500', '133021.587500', '133022.787500', '133023.987500', '133025.187500', '133026.387500', '133027.587500', '133028.787500', '133029.987500'], 'ContentTime': ['132827.975000', '132827.978000', '132827.980000', '132827.998000', '132828.002000', '132828.004000', '132828.007000', '132828.009000', '132828.012000', '132828.019000', '132828.021000', '132828.024000', '132828.033000', 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'132948.014000', '132948.017000', '132948.019000', '132948.022000', '132948.024000', '132948.027000', '132948.029000', '132948.032000', '132948.035000', '132948.037000', '132948.040000', '132948.042000', '132948.045000', '132948.047000', '132948.050000', '132948.052000', '132948.055000', '133027.970000', '133027.973000', '133027.976000', '133027.978000', '133027.981000', '133027.990000', '133027.992000', '133027.995000', '133027.998000', '133028.001000', '133028.004000', '133028.006000', '133028.009000', '133028.011000', '133028.014000', '133028.017000', '133028.019000', '133028.022000', '133028.024000', '133028.027000', '133028.030000', '133028.032000', '133028.035000', '133028.037000', '133028.040000', '133028.042000', '133028.045000', '133028.048000', '133028.050000', '133028.053000', '133028.055000', '133028.058000', '133028.060000', '133031.870000', '133031.873000', '133031.876000', '133031.878000'], 'InstanceCreationTime': ['132827.975000', '132827.978000', '132827.980000', '132827.998000', '132828.002000', '132828.004000', '132828.007000', '132828.009000', '132828.012000', '132828.019000', '132828.021000', '132828.024000', '132828.033000', '132828.036000', '132828.038000', '132828.041000', '132828.044000', '132828.046000', '132828.049000', '132828.051000', '132828.054000', '132907.971000', '132907.973000', '132907.976000', '132907.979000', '132907.981000', '132907.984000', '132907.987000', '132907.989000', '132907.992000', '132907.994000', '132907.997000', '132908.000000', '132908.003000', '132908.005000', '132908.008000', '132908.010000', '132908.013000', '132908.016000', '132908.018000', '132908.021000', '132908.023000', '132908.026000', '132908.028000', '132908.031000', '132908.034000', '132908.036000', '132908.039000', '132908.041000', '132908.044000', '132908.047000', '132908.049000', '132908.052000', '132908.054000', '132908.065000', '132947.972000', '132947.974000', '132947.977000', '132947.980000', '132947.982000', '132947.985000', '132947.988000', '132947.990000', '132947.993000', '132947.995000', '132947.998000', '132948.001000', '132948.004000', '132948.006000', '132948.009000', '132948.011000', '132948.014000', '132948.017000', '132948.019000', '132948.022000', '132948.024000', '132948.027000', '132948.029000', '132948.032000', '132948.035000', '132948.037000', '132948.040000', '132948.042000', '132948.045000', '132948.047000', '132948.050000', '132948.052000', '132948.055000', '133027.970000', '133027.973000', '133027.976000', '133027.978000', '133027.981000', '133027.990000', '133027.992000', '133027.995000', '133027.998000', '133028.001000', '133028.004000', '133028.006000', '133028.009000', '133028.011000', '133028.014000', '133028.017000', '133028.019000', '133028.022000', '133028.024000', '133028.027000', '133028.030000', '133028.032000', '133028.035000', '133028.037000', '133028.040000', '133028.042000', '133028.045000', '133028.048000', '133028.050000', '133028.053000', '133028.055000', '133028.058000', '133028.060000', '133031.870000', '133031.873000', '133031.876000', '133031.878000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2184, 2125, 2079, 2070, 2039, 2041, 2044, 2030, 2018, 2054, 2018, 2057, 2060, 2038, 2056, 2064, 2026, 2054, 2047, 2030, 2048, 2029, 2037, 2058, 2037, 2038, 2053, 2027, 2054, 2050, 2031, 2035, 2031, 2033, 2051, 2053, 2058, 2046, 2044, 2030, 2046, 2035, 2048, 2052, 2032, 2044, 2040, 2056, 2039, 2046, 2074, 2038, 2048, 2064, 2042, 2048, 2042, 2044, 2065, 2032, 2053, 2055, 2023, 2037, 2037, 2038, 2055, 2043, 2036, 2053, 2039, 2028, 2040, 2032, 2034, 2049, 2026, 2039, 2049, 2035, 2026, 2018, 2036, 2015, 2032, 2040, 2019, 2028, 2040, 2028, 2042, 2040, 2031, 2032, 2020, 2040, 2054, 2049, 2021, 2041, 2055, 2047, 2015, 2041, 2044, 2035, 2035, 2043, 2017, 2043, 2045, 2034, 2037, 2067, 2065, 2037, 2048, 2051, 2021, 2042, 2050, 2033, 2027, 2043, 2049], 'WindowCenter': [604.0, 601.0, 600.0, 599.0, 599.0, 599.0, 599.0, 599.0, 598.0, 599.0, 598.0, 599.0, 599.0, 599.0, 599.0, 599.0, 598.0, 599.0, 599.0, 599.0, 599.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 600.0, 601.0, 600.0, 599.0, 600.0, 599.0, 598.0, 599.0, 600.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 598.0, 598.0, 597.0, 597.0, 598.0, 597.0, 598.0, 599.0, 600.0, 599.0, 600.0, 600.0, 599.0, 599.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 600.0, 599.0, 598.0, 599.0, 599.0, 600.0, 600.0, 600.0, 600.0, 600.0, 599.0, 599.0, 601.0, 602.0, 603.0, 603.0, 602.0, 601.0, 600.0, 599.0, 598.0, 598.0, 597.0, 597.0, 596.0, 596.0, 596.0, 597.0, 598.0, 599.0, 600.0, 600.0, 599.0, 599.0, 600.0, 599.0, 598.0, 598.0, 598.0, 598.0, 597.0, 598.0, 599.0, 598.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0], 'WindowWidth': [1287.0, 1280.0, 1276.0, 1275.0, 1273.0, 1274.0, 1274.0, 1274.0, 1272.0, 1273.0, 1271.0, 1273.0, 1274.0, 1273.0, 1274.0, 1273.0, 1272.0, 1274.0, 1273.0, 1274.0, 1273.0, 1271.0, 1271.0, 1272.0, 1271.0, 1271.0, 1272.0, 1271.0, 1273.0, 1274.0, 1273.0, 1273.0, 1273.0, 1274.0, 1276.0, 1277.0, 1275.0, 1274.0, 1275.0, 1274.0, 1273.0, 1273.0, 1276.0, 1274.0, 1273.0, 1274.0, 1273.0, 1273.0, 1274.0, 1273.0, 1272.0, 1270.0, 1269.0, 1270.0, 1271.0, 1270.0, 1272.0, 1274.0, 1275.0, 1274.0, 1275.0, 1275.0, 1273.0, 1275.0, 1277.0, 1277.0, 1277.0, 1277.0, 1277.0, 1277.0, 1276.0, 1277.0, 1277.0, 1275.0, 1276.0, 1276.0, 1274.0, 1273.0, 1273.0, 1275.0, 1275.0, 1276.0, 1277.0, 1276.0, 1276.0, 1275.0, 1275.0, 1279.0, 1282.0, 1283.0, 1284.0, 1282.0, 1279.0, 1276.0, 1273.0, 1271.0, 1271.0, 1270.0, 1268.0, 1267.0, 1266.0, 1267.0, 1269.0, 1272.0, 1274.0, 1276.0, 1275.0, 1274.0, 1273.0, 1275.0, 1274.0, 1273.0, 1272.0, 1272.0, 1270.0, 1270.0, 1271.0, 1272.0, 1273.0, 1274.0, 1274.0, 1273.0, 1274.0, 1275.0, 1275.0]}, 'slices': {}}</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0010692682926829271</td></tr>
<tr><td colspan=3>aqi</td><td>0.0034818891056910563</td></tr>
<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>31.25940705934428</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.1736537011475408</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.010019173442623</td></tr>
<tr><td colspan=3>efc</td><td>0.5409</td></tr>
<tr><td colspan=3>fber</td><td>501.0205</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.12232763830419119</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>10</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>8.130081300813009</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3870404859866152</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.286020124490929</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.3851223054815565</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.4899790279873595</td></tr>
<tr><td colspan=3>gcor</td><td>0.0162495</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>0.008841712959110737</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.053475745022296906</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>123</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.2622758006121115</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>51.1321</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>13.5242</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>58.9701</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>356295.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>222.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>101.2412</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>0.6356</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>215.3751</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>570.5228</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>547.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>108345.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>180.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1003.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>241.7908</td></tr>
<tr><td colspan=3>tsnr</td><td>56.30613103159703</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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<div class="card-header m-0">
Rating widget
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<h2 class="accordion-header" id="qcslider-head">
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
</h2>
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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<h2 class="accordion-header" id="qcartifacts-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
Record specific artifacts
</button>
</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>