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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-02_session-01_subject-8021_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-background_bold.svg</a></small>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" target="_blank">sub-8021/figures/sub-8021_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8021/ses-01/func/sub-8021_ses-01_task-RDMmotion_run-02_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>ec7608defb2a8193a1293e7e188ee4a8</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>13:03:52.545000</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.992185, 0.116564, 0.0445073, -0.104633, 0.971625, -0.212124]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-02</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0437109</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-02</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>9</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1753, -9105, 4379, 399, -75, -372, -126, -1]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>218.152</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3789901733398438, -0.25088149309158325, 0.16312886774539948, 113.1288833618164], [-0.2794884443283081, 2.3296921253204346, -0.4939415156841278, -67.01716613769531], [0.10671635717153549, 0.5086144208908081, 2.342949151992798, -94.04196166992188], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['130352.545000', '130353.745000', '130354.945000', '130356.145000', '130357.345000', '130358.545000', '130359.745000', '130400.945000', '130402.145000', '130403.345000', '130404.545000', '130405.745000', '130406.945000', '130408.145000', '130409.345000', '130410.545000', '130411.745000', '130412.945000', '130414.145000', '130415.345000', '130416.545000', '130417.745000', '130418.945000', 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'130529.745000', '130530.945000', '130532.145000', '130533.345000', '130534.545000', '130535.745000', '130536.945000', '130538.145000', '130539.345000', '130540.545000', '130541.745000', '130542.945000', '130544.145000', '130545.345000', '130546.545000', '130547.745000', '130548.945000', '130550.145000', '130551.345000', '130552.545000', '130553.745000', '130554.945000', '130556.145000', '130557.345000', '130558.545000', '130559.745000', '130600.945000', '130602.145000', '130603.345000', '130604.545000', '130605.745000', '130606.945000', '130608.145000', '130609.345000', '130610.545000', '130611.745000', '130612.945000', '130614.145000', '130615.345000', '130616.545000', '130617.745000', '130618.945000', '130620.145000', '130621.345000'], 'ContentTime': ['130425.796000', '130425.799000', '130425.803000', '130425.810000', '130425.821000', '130425.824000', '130425.832000', '130425.834000', '130425.837000', '130425.839000', '130425.842000', '130425.845000', '130425.847000', '130425.850000', '130425.853000', '130425.855000', '130425.858000', '130425.860000', '130425.863000', '130425.865000', '130425.868000', '130425.870000', '130425.873000', '130425.876000', '130425.887000', '130425.890000', '130425.893000', '130505.792000', '130505.794000', '130505.797000', '130505.799000', '130505.802000', '130505.805000', '130505.807000', '130505.810000', '130505.813000', '130505.815000', '130505.818000', '130505.820000', '130505.823000', '130505.826000', '130505.845000', '130505.847000', '130505.850000', '130505.853000', '130505.855000', '130505.858000', '130505.861000', '130505.863000', '130505.866000', '130505.868000', '130505.871000', '130505.874000', '130505.876000', '130505.879000', '130505.881000', '130505.884000', '130505.886000', '130505.889000', '130505.892000', '130545.791000', '130545.794000', '130545.797000', '130545.800000', '130545.802000', '130545.805000', '130545.807000', '130545.810000', '130545.813000', '130545.815000', '130545.818000', '130545.821000', '130545.823000', '130545.826000', '130545.828000', '130545.831000', '130545.833000', '130545.836000', '130545.839000', '130545.841000', '130545.844000', '130545.846000', '130545.849000', '130545.852000', '130545.854000', '130545.857000', '130545.860000', '130545.862000', '130545.865000', '130545.867000', '130545.878000', '130545.880000', '130545.883000', '130623.170000', '130623.172000', '130623.175000', '130623.178000', '130623.182000', '130623.185000', '130623.188000', '130623.190000', '130623.193000', '130623.196000', '130623.198000', '130623.201000', '130623.204000', '130623.206000', '130623.209000', '130623.212000', '130623.215000', '130623.218000', '130623.220000', '130623.223000', '130623.226000', '130623.228000', '130623.231000', '130623.233000', '130623.254000', '130623.257000', '130623.259000', '130623.262000', '130623.270000', '130623.272000', '130623.275000', '130623.278000'], 'InstanceCreationTime': ['130425.796000', '130425.799000', '130425.803000', '130425.810000', '130425.821000', '130425.824000', '130425.832000', '130425.834000', '130425.837000', '130425.839000', '130425.842000', '130425.845000', '130425.847000', '130425.850000', '130425.853000', '130425.855000', '130425.858000', '130425.860000', '130425.863000', '130425.865000', '130425.868000', '130425.870000', '130425.873000', '130425.876000', '130425.887000', '130425.890000', '130425.893000', '130505.792000', '130505.794000', '130505.797000', '130505.799000', '130505.802000', '130505.805000', '130505.807000', '130505.810000', '130505.813000', '130505.815000', '130505.818000', '130505.820000', '130505.823000', '130505.826000', '130505.845000', '130505.847000', '130505.850000', '130505.853000', '130505.855000', '130505.858000', '130505.861000', '130505.863000', '130505.866000', '130505.868000', '130505.871000', '130505.874000', '130505.876000', '130505.879000', '130505.881000', '130505.884000', '130505.886000', '130505.889000', '130505.892000', '130545.791000', '130545.794000', '130545.797000', '130545.800000', '130545.802000', '130545.805000', '130545.807000', '130545.810000', '130545.813000', '130545.815000', '130545.818000', '130545.821000', '130545.823000', '130545.826000', '130545.828000', '130545.831000', '130545.833000', '130545.836000', '130545.839000', '130545.841000', '130545.844000', '130545.846000', '130545.849000', '130545.852000', '130545.854000', '130545.857000', '130545.860000', '130545.862000', '130545.865000', '130545.867000', '130545.878000', '130545.880000', '130545.883000', '130623.170000', '130623.172000', '130623.175000', '130623.178000', '130623.182000', '130623.185000', '130623.188000', '130623.190000', '130623.193000', '130623.196000', '130623.198000', '130623.201000', '130623.204000', '130623.206000', '130623.209000', '130623.212000', '130623.215000', '130623.218000', '130623.220000', '130623.223000', '130623.226000', '130623.228000', '130623.231000', '130623.233000', '130623.254000', '130623.257000', '130623.259000', '130623.262000', '130623.270000', '130623.272000', '130623.275000', '130623.278000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2148, 2074, 2055, 2021, 2019, 2018, 2013, 2013, 1997, 1997, 2008, 2010, 2004, 2017, 2008, 2013, 2008, 2007, 1996, 1996, 2018, 2005, 2008, 1997, 2006, 2001, 2014, 1995, 2012, 2006, 2014, 2021, 2012, 2009, 2000, 2017, 2008, 2016, 2007, 2006, 2007, 2016, 2017, 2012, 2031, 2010, 1999, 2010, 2005, 2014, 2012, 1994, 1998, 2016, 2000, 1995, 2015, 2009, 1984, 1989, 2003, 1999, 2001, 2000, 2010, 1998, 1995, 2002, 2014, 2022, 2007, 1993, 2005, 1996, 1987, 1997, 2001, 2001, 2004, 2014, 2027, 2003, 2016, 1983, 1989, 1999, 1993, 1997, 1997, 2009, 2002, 1996, 2014, 2013, 1996, 2004, 2000, 2007, 1984, 1989, 2016, 2006, 1999, 2010, 2004, 1997, 1992, 2020, 2018, 1989, 1997, 2020, 2005, 2007, 2026, 2026, 2008, 2015, 1979, 2013, 1999, 2024, 2008, 1995, 1994], 'WindowCenter': [606.0, 603.0, 602.0, 601.0, 601.0, 601.0, 600.0, 600.0, 600.0, 600.0, 600.0, 601.0, 600.0, 601.0, 600.0, 600.0, 600.0, 599.0, 599.0, 599.0, 600.0, 599.0, 600.0, 599.0, 599.0, 599.0, 599.0, 600.0, 599.0, 599.0, 598.0, 598.0, 598.0, 598.0, 599.0, 599.0, 600.0, 601.0, 600.0, 599.0, 599.0, 599.0, 599.0, 599.0, 600.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 598.0, 599.0, 600.0, 600.0, 600.0, 599.0, 598.0, 598.0, 598.0, 598.0, 598.0, 597.0, 597.0, 598.0, 598.0, 598.0, 599.0, 600.0, 601.0, 601.0, 600.0, 599.0, 598.0, 598.0, 598.0, 598.0, 598.0, 599.0, 600.0, 601.0, 601.0, 600.0, 599.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 598.0, 599.0, 599.0, 600.0, 599.0, 599.0, 598.0, 598.0, 598.0, 598.0, 599.0, 599.0, 600.0, 600.0, 600.0, 599.0, 600.0, 600.0, 599.0, 598.0, 599.0, 599.0, 598.0, 598.0, 598.0, 599.0, 599.0, 599.0, 598.0, 599.0, 598.0, 598.0, 598.0, 598.0, 599.0], 'WindowWidth': [1292.0, 1283.0, 1280.0, 1278.0, 1278.0, 1278.0, 1277.0, 1277.0, 1277.0, 1277.0, 1278.0, 1279.0, 1278.0, 1278.0, 1277.0, 1277.0, 1276.0, 1275.0, 1274.0, 1275.0, 1275.0, 1275.0, 1275.0, 1274.0, 1274.0, 1274.0, 1275.0, 1275.0, 1275.0, 1274.0, 1273.0, 1272.0, 1271.0, 1272.0, 1273.0, 1275.0, 1276.0, 1278.0, 1276.0, 1275.0, 1275.0, 1275.0, 1275.0, 1275.0, 1276.0, 1275.0, 1274.0, 1274.0, 1274.0, 1274.0, 1273.0, 1272.0, 1274.0, 1277.0, 1277.0, 1276.0, 1275.0, 1273.0, 1272.0, 1272.0, 1272.0, 1272.0, 1270.0, 1270.0, 1272.0, 1271.0, 1272.0, 1274.0, 1276.0, 1279.0, 1279.0, 1277.0, 1275.0, 1273.0, 1271.0, 1271.0, 1272.0, 1273.0, 1274.0, 1277.0, 1279.0, 1279.0, 1276.0, 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</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0008432258064516128</td></tr>
<tr><td colspan=3>aqi</td><td>0.0035773812096774197</td></tr>
<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>30.580803692520345</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.1403215807317066</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9924538939837401</td></tr>
<tr><td colspan=3>efc</td><td>0.5397</td></tr>
<tr><td colspan=3>fber</td><td>507.9322</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.11450416480900462</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>5</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>4.032258064516129</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3778698648391905</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.28302145147804</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.3799924476152796</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.470595695424251</td></tr>
<tr><td colspan=3>gcor</td><td>0.00811841</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>0.007741450797766447</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.054618481546640396</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.2634215660124477</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>50.7804</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>13.5467</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>58.6031</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>356606.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>219.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>101.2669</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>0.648</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>215.3719</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>571.7809</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>547.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>108034.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>183.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1004.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>241.6684</td></tr>
<tr><td colspan=3>tsnr</td><td>57.597641360946</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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Record specific artifacts
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<fieldset id="qcartifacts-group" class="form-group">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>