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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-background_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-04_session-01_subject-8018_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" style="">
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Problem loading figure sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" target="_blank">sub-8018/figures/sub-8018_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8018/ses-01/func/sub-8018_ses-01_task-RDMmotion_run-04_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>87f64df972de2840e501ac6031d8dc2e</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>09:42:40.485000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.998696, 0.00263815, 0.0509839, -0.00505487, 0.998866, 0.0473311]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-04</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0557043</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-04</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>13</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1748, -9121, 4431, 338, -71, -222, 97, -19]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.155, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.155, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.155, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.155, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
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|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
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|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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<tr><td colspan=2>TxRefAmp</td><td>237.206</td></tr>
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<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3946006298065186, -0.012120209634304047, 0.12192308157682419, 104.74176025390625], [-0.006325559224933386, 2.3950092792510986, 0.11406498402357101, -97.3941421508789], [0.12224558740854263, -0.11348702013492584, 2.3941855430603027, -61.20684814453125], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['094240.485000', '094241.685000', '094242.885000', '094244.085000', '094245.285000', '094246.485000', '094247.685000', '094248.885000', '094250.085000', '094251.285000', '094252.485000', '094253.685000', '094254.885000', '094256.085000', '094257.285000', '094258.485000', '094259.685000', '094300.885000', '094302.085000', '094303.285000', '094304.485000', '094305.685000', '094306.885000', '094308.085000', '094309.285000', '094310.485000', '094311.685000', '094312.885000', '094314.085000', '094315.285000', '094316.485000', '094317.685000', '094318.885000', '094320.085000', '094321.285000', '094322.485000', '094323.685000', '094324.885000', '094326.085000', '094327.285000', '094328.485000', '094329.685000', '094330.885000', '094332.085000', '094333.285000', '094334.485000', '094335.685000', '094336.885000', '094338.085000', '094339.285000', '094340.485000', '094341.685000', '094342.885000', '094344.085000', '094345.285000', '094346.485000', '094347.685000', '094348.885000', '094350.085000', '094351.285000', '094352.485000', '094353.685000', '094354.885000', '094356.085000', '094357.285000', '094358.485000', '094359.685000', '094400.885000', '094402.085000', '094403.285000', '094404.485000', '094405.685000', '094406.885000', '094408.085000', '094409.285000', '094410.485000', '094411.685000', '094412.885000', '094414.085000', '094415.285000', '094416.485000', '094417.685000', '094418.885000', '094420.085000', '094421.285000', '094422.485000', '094423.685000', '094424.885000', '094426.085000', '094427.285000', '094428.485000', '094429.685000', '094430.885000', '094432.085000', '094433.285000', '094434.485000', '094435.685000', '094436.885000', '094438.085000', '094439.285000', '094440.485000', '094441.685000', '094442.885000', '094444.085000', '094445.285000', '094446.485000', '094447.685000', '094448.885000', '094450.085000', '094451.285000', '094452.485000', '094453.685000', '094454.885000', '094456.085000', '094457.285000', '094458.485000', '094459.685000', '094500.885000', '094502.085000', '094503.285000', '094504.485000', '094505.685000', '094506.885000', '094508.085000', '094509.285000'], 'ContentTime': ['094323.802000', '094323.805000', '094323.808000', '094323.811000', '094323.813000', '094323.816000', '094323.819000', '094323.821000', '094323.824000', '094323.826000', '094323.829000', '094323.832000', '094323.834000', '094323.837000', '094323.840000', '094323.848000', '094323.851000', '094323.853000', '094323.856000', '094323.859000', '094323.861000', '094323.864000', '094323.867000', '094323.870000', '094323.873000', '094323.876000', '094323.879000', '094323.890000', '094323.892000', '094323.895000', '094323.898000', '094323.900000', '094323.903000', '094323.906000', '094323.908000', '094403.797000', '094403.800000', '094403.803000', '094403.806000', '094403.808000', '094403.811000', '094403.814000', '094403.816000', '094403.819000', '094403.821000', '094403.824000', '094403.827000', '094403.829000', '094403.832000', '094403.834000', '094403.837000', '094403.839000', '094403.863000', '094403.865000', '094403.868000', '094403.870000', '094403.873000', '094403.876000', '094403.878000', '094403.881000', '094403.883000', '094403.886000', '094403.888000', '094403.891000', '094403.894000', '094403.896000', '094403.899000', '094403.901000', '094403.904000', '094443.799000', '094443.802000', '094443.804000', '094443.807000', '094443.809000', '094443.812000', '094443.815000', '094443.817000', '094443.820000', '094443.823000', '094443.825000', '094443.828000', '094443.830000', '094443.833000', '094443.836000', '094443.839000', '094443.841000', '094443.844000', '094443.847000', '094443.862000', '094443.865000', '094443.868000', '094443.871000', '094443.873000', '094443.876000', '094443.878000', '094443.881000', '094443.883000', '094443.886000', '094443.888000', '094443.891000', '094443.894000', '094443.896000', '094510.699000', '094510.702000', '094510.704000', '094510.707000', '094510.710000', '094510.712000', '094510.715000', '094510.717000', '094510.720000', '094510.723000', '094510.725000', '094510.728000', '094510.730000', '094510.733000', '094510.736000', '094510.738000', '094510.741000', '094510.744000', '094510.746000', '094510.749000', '094510.751000', '094510.754000', '094510.757000'], 'InstanceCreationTime': ['094323.802000', '094323.805000', '094323.808000', '094323.811000', '094323.813000', '094323.816000', '094323.819000', '094323.821000', '094323.824000', '094323.826000', '094323.829000', '094323.832000', '094323.834000', '094323.837000', '094323.840000', '094323.848000', '094323.851000', '094323.853000', '094323.856000', '094323.859000', '094323.861000', '094323.864000', '094323.867000', '094323.870000', '094323.873000', '094323.876000', '094323.879000', '094323.890000', '094323.892000', '094323.895000', '094323.898000', '094323.900000', '094323.903000', '094323.906000', '094323.908000', '094403.797000', '094403.800000', '094403.803000', '094403.806000', '094403.808000', '094403.811000', '094403.814000', '094403.816000', '094403.819000', '094403.821000', '094403.824000', '094403.827000', '094403.829000', '094403.832000', '094403.834000', '094403.837000', '094403.839000', '094403.863000', '094403.865000', '094403.868000', '094403.870000', '094403.873000', '094403.876000', '094403.878000', '094403.881000', '094403.883000', '094403.886000', '094403.888000', '094403.891000', '094403.894000', '094403.896000', '094403.899000', '094403.901000', '094403.904000', '094443.799000', '094443.802000', '094443.804000', '094443.807000', '094443.809000', '094443.812000', '094443.815000', '094443.817000', '094443.820000', '094443.823000', '094443.825000', '094443.828000', '094443.830000', '094443.833000', '094443.836000', '094443.839000', '094443.841000', '094443.844000', '094443.847000', '094443.862000', '094443.865000', '094443.868000', '094443.871000', '094443.873000', '094443.876000', '094443.878000', '094443.881000', '094443.883000', '094443.886000', '094443.888000', '094443.891000', '094443.894000', '094443.896000', '094510.699000', '094510.702000', '094510.704000', '094510.707000', '094510.710000', '094510.712000', '094510.715000', '094510.717000', '094510.720000', '094510.723000', '094510.725000', '094510.728000', '094510.730000', '094510.733000', '094510.736000', '094510.738000', '094510.741000', '094510.744000', '094510.746000', '094510.749000', '094510.751000', '094510.754000', '094510.757000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1811, 1738, 1701, 1688, 1683, 1684, 1678, 1677, 1694, 1684, 1686, 1698, 1693, 1722, 1681, 1686, 1677, 1676, 1684, 1681, 1677, 1671, 1670, 1691, 1689, 1684, 1669, 1674, 1665, 1676, 1665, 1669, 1671, 1669, 1669, 1662, 1652, 1656, 1667, 1647, 1659, 1670, 1660, 1684, 1669, 1661, 1663, 1667, 1663, 1684, 1664, 1684, 1669, 1664, 1669, 1659, 1661, 1647, 1661, 1661, 1670, 1669, 1679, 1670, 1681, 1660, 1669, 1681, 1669, 1663, 1681, 1682, 1669, 1691, 1695, 1686, 1680, 1689, 1703, 1689, 1674, 1674, 1662, 1665, 1664, 1662, 1657, 1671, 1672, 1660, 1661, 1675, 1677, 1648, 1668, 1658, 1655, 1667, 1670, 1659, 1658, 1677, 1663, 1672, 1660, 1659, 1674, 1663, 1673, 1664, 1666, 1681, 1664, 1675, 1657, 1655, 1687, 1684, 1672, 1690, 1698, 1675, 1660, 1645, 1657], 'WindowCenter': [555.0, 551.0, 549.0, 549.0, 550.0, 550.0, 550.0, 549.0, 549.0, 549.0, 550.0, 550.0, 550.0, 549.0, 548.0, 549.0, 549.0, 549.0, 548.0, 548.0, 548.0, 548.0, 549.0, 550.0, 549.0, 549.0, 548.0, 548.0, 548.0, 549.0, 549.0, 549.0, 550.0, 549.0, 548.0, 548.0, 547.0, 548.0, 548.0, 548.0, 548.0, 548.0, 549.0, 548.0, 548.0, 549.0, 550.0, 551.0, 550.0, 550.0, 549.0, 549.0, 548.0, 549.0, 549.0, 549.0, 549.0, 548.0, 548.0, 548.0, 549.0, 549.0, 550.0, 550.0, 549.0, 548.0, 548.0, 548.0, 548.0, 549.0, 549.0, 550.0, 550.0, 551.0, 551.0, 551.0, 550.0, 551.0, 551.0, 551.0, 551.0, 550.0, 549.0, 548.0, 548.0, 547.0, 547.0, 548.0, 549.0, 549.0, 549.0, 549.0, 549.0, 548.0, 549.0, 550.0, 549.0, 549.0, 549.0, 549.0, 550.0, 550.0, 550.0, 551.0, 550.0, 551.0, 551.0, 551.0, 551.0, 551.0, 552.0, 552.0, 550.0, 550.0, 549.0, 549.0, 551.0, 551.0, 551.0, 551.0, 550.0, 548.0, 548.0, 547.0, 547.0], 'WindowWidth': [1179.0, 1170.0, 1165.0, 1166.0, 1167.0, 1168.0, 1167.0, 1166.0, 1165.0, 1166.0, 1168.0, 1168.0, 1168.0, 1166.0, 1163.0, 1165.0, 1165.0, 1165.0, 1164.0, 1163.0, 1163.0, 1164.0, 1166.0, 1167.0, 1166.0, 1166.0, 1163.0, 1163.0, 1164.0, 1165.0, 1166.0, 1166.0, 1167.0, 1165.0, 1163.0, 1163.0, 1162.0, 1163.0, 1164.0, 1164.0, 1164.0, 1164.0, 1165.0, 1164.0, 1164.0, 1166.0, 1168.0, 1169.0, 1168.0, 1168.0, 1166.0, 1165.0, 1164.0, 1165.0, 1165.0, 1166.0, 1166.0, 1164.0, 1164.0, 1164.0, 1165.0, 1167.0, 1168.0, 1168.0, 1165.0, 1163.0, 1163.0, 1164.0, 1164.0, 1166.0, 1167.0, 1168.0, 1168.0, 1169.0, 1169.0, 1169.0, 1169.0, 1170.0, 1171.0, 1171.0, 1170.0, 1168.0, 1165.0, 1164.0, 1162.0, 1162.0, 1162.0, 1164.0, 1165.0, 1165.0, 1165.0, 1166.0, 1165.0, 1165.0, 1167.0, 1167.0, 1167.0, 1166.0, 1166.0, 1166.0, 1168.0, 1168.0, 1169.0, 1169.0, 1168.0, 1170.0, 1170.0, 1170.0, 1170.0, 1171.0, 1173.0, 1172.0, 1169.0, 1168.0, 1166.0, 1166.0, 1169.0, 1171.0, 1170.0, 1169.0, 1167.0, 1162.0, 1162.0, 1160.0, 1161.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.001223951612903226</td></tr>
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<tr><td colspan=3>aqi</td><td>0.006664687338709677</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>35.10909382845531</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1331699028455282</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9897550128455281</td></tr>
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<tr><td colspan=3>efc</td><td>0.5517</td></tr>
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<tr><td colspan=3>fber</td><td>480.0572</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.14184892016692036</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>24</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>19.35483870967742</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>2.897002932936972</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>2.73611604369065</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.037242871057256</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>2.9176498840630103</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00885616</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.0005658780573867261</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.08764276653528214</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.259275268257803</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>15.748</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>12.7336</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>59.4063</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>23.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>359664.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>249.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>91.5944</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.5031</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>195.2372</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>516.4471</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>497.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>104976.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>155.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>915.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>219.981</td></tr>
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<tr><td colspan=3>tsnr</td><td>45.841639457736164</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |