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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-06_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-background_bold.svg</a></small>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg</a></small>
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_run-06_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" style="width: 100%" />
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8017/ses-01/func/sub-8017_ses-01_task-RDMmotion_run-06_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>fefe5fd3a5813c96a18156f9c8dc1b26</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>11:53:23.940000</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.99137, -0.0233719, -0.128997, 0.0263063, 0.999431, 0.0210909]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-06</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0544656</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-06</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>17</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1723, -9117, 4435, 490, 22, -188, -99, -23]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>215.627</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3770337104797363, 0.06307527422904968, -0.30823373794555664, 104.931396484375], [0.056039370596408844, 2.3963639736175537, 0.058325450867414474, -107.56715393066406], [-0.30929961800575256, -0.05057014152407646, 2.3794095516204834, -30.331119537353516], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['115323.940000', '115325.140000', '115326.340000', '115327.540000', '115328.740000', '115329.940000', '115331.140000', '115332.340000', '115333.540000', '115334.740000', '115335.940000', '115337.140000', '115338.340000', '115339.540000', '115340.740000', '115341.940000', '115343.140000', '115344.340000', '115345.540000', '115346.740000', '115347.940000', '115349.140000', '115350.340000', 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'115501.140000', '115502.340000', '115503.540000', '115504.740000', '115505.940000', '115507.140000', '115508.340000', '115509.540000', '115510.740000', '115511.940000', '115513.140000', '115514.340000', '115515.540000', '115516.740000', '115517.940000', '115519.140000', '115520.340000', '115521.540000', '115522.740000', '115523.940000', '115525.140000', '115526.340000', '115527.540000', '115528.740000', '115529.940000', '115531.140000', '115532.340000', '115533.540000', '115534.740000', '115535.940000', '115537.140000', '115538.340000', '115539.540000', '115540.740000', '115541.940000', '115543.140000', '115544.340000', '115545.540000', '115546.740000', '115547.940000', '115549.140000', '115550.340000', '115551.540000', '115552.740000'], 'ContentTime': ['115357.769000', '115357.772000', '115357.775000', '115357.777000', '115357.780000', '115357.783000', '115357.785000', '115357.788000', '115357.790000', '115357.793000', '115357.803000', '115357.806000', '115357.808000', '115357.811000', '115357.813000', '115357.816000', '115357.819000', '115357.827000', '115357.830000', '115357.833000', '115357.835000', '115357.838000', '115357.840000', '115357.843000', '115357.845000', '115357.848000', '115357.851000', '115357.854000', '115437.765000', '115437.767000', '115437.770000', '115437.773000', '115437.775000', '115437.778000', '115437.781000', '115437.783000', '115437.786000', '115437.788000', '115437.791000', '115437.794000', '115437.796000', '115437.799000', '115437.801000', '115437.804000', '115437.806000', '115437.809000', '115437.812000', '115437.814000', '115437.817000', '115437.819000', '115437.822000', '115437.824000', '115437.827000', '115437.838000', '115437.841000', '115437.843000', '115437.846000', '115437.849000', '115437.851000', '115437.854000', '115437.856000', '115517.764000', '115517.767000', '115517.770000', '115517.772000', '115517.775000', '115517.778000', '115517.780000', '115517.783000', '115517.785000', '115517.788000', '115517.791000', '115517.793000', '115517.796000', '115517.798000', '115517.801000', '115517.804000', '115517.806000', '115517.809000', '115517.811000', '115517.814000', '115517.817000', '115517.819000', '115517.822000', '115517.824000', '115517.827000', '115517.830000', '115517.833000', '115517.835000', '115517.838000', '115517.840000', '115517.851000', '115517.854000', '115517.856000', '115554.103000', '115554.106000', '115554.109000', '115554.112000', '115554.115000', '115554.117000', '115554.120000', '115554.123000', '115554.125000', '115554.128000', '115554.131000', '115554.133000', '115554.136000', '115554.139000', '115554.141000', '115554.144000', '115554.146000', '115554.149000', '115554.152000', '115554.154000', '115554.157000', '115554.159000', '115554.162000', '115554.165000', '115554.167000', '115554.170000', '115554.172000', '115554.175000', '115554.177000', '115554.180000', '115554.183000'], 'InstanceCreationTime': ['115357.769000', '115357.772000', '115357.775000', '115357.777000', '115357.780000', '115357.783000', '115357.785000', '115357.788000', '115357.790000', '115357.793000', '115357.803000', '115357.806000', '115357.808000', '115357.811000', '115357.813000', '115357.816000', '115357.819000', '115357.827000', '115357.830000', '115357.833000', '115357.835000', '115357.838000', '115357.840000', '115357.843000', '115357.845000', '115357.848000', '115357.851000', '115357.854000', '115437.765000', '115437.767000', '115437.770000', '115437.773000', '115437.775000', '115437.778000', '115437.781000', '115437.783000', '115437.786000', '115437.788000', '115437.791000', '115437.794000', '115437.796000', '115437.799000', '115437.801000', '115437.804000', '115437.806000', '115437.809000', '115437.812000', '115437.814000', '115437.817000', '115437.819000', '115437.822000', '115437.824000', '115437.827000', '115437.838000', '115437.841000', '115437.843000', '115437.846000', '115437.849000', '115437.851000', '115437.854000', '115437.856000', '115517.764000', '115517.767000', '115517.770000', '115517.772000', '115517.775000', '115517.778000', '115517.780000', '115517.783000', '115517.785000', '115517.788000', '115517.791000', '115517.793000', '115517.796000', '115517.798000', '115517.801000', '115517.804000', '115517.806000', '115517.809000', '115517.811000', '115517.814000', '115517.817000', '115517.819000', '115517.822000', '115517.824000', '115517.827000', '115517.830000', '115517.833000', '115517.835000', '115517.838000', '115517.840000', '115517.851000', '115517.854000', '115517.856000', '115554.103000', '115554.106000', '115554.109000', '115554.112000', '115554.115000', '115554.117000', '115554.120000', '115554.123000', '115554.125000', '115554.128000', '115554.131000', '115554.133000', '115554.136000', '115554.139000', '115554.141000', '115554.144000', '115554.146000', '115554.149000', '115554.152000', '115554.154000', '115554.157000', '115554.159000', '115554.162000', '115554.165000', '115554.167000', '115554.170000', '115554.172000', '115554.175000', '115554.177000', '115554.180000', '115554.183000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2529, 2448, 2419, 2390, 2389, 2367, 2383, 2355, 2368, 2363, 2366, 2376, 2372, 2370, 2379, 2376, 2394, 2376, 2382, 2373, 2375, 2364, 2366, 2394, 2377, 2380, 2385, 2398, 2377, 2384, 2393, 2400, 2386, 2387, 2398, 2370, 2405, 2386, 2379, 2387, 2378, 2388, 2390, 2385, 2377, 2376, 2383, 2386, 2383, 2383, 2382, 2398, 2395, 2396, 2382, 2373, 2382, 2377, 2369, 2376, 2372, 2372, 2375, 2381, 2379, 2388, 2389, 2378, 2391, 2374, 2379, 2380, 2387, 2389, 2377, 2370, 2293, 2300, 2286, 2424, 2383, 2373, 2384, 2403, 2373, 2384, 2384, 2363, 2390, 2370, 2401, 2386, 2384, 2405, 2391, 2389, 2379, 2389, 2388, 2389, 2370, 2398, 2373, 2368, 2254, 2301, 2371, 2324, 2388, 2375, 2405, 2386, 2380, 2391, 2362, 2370, 2404, 2369, 2391, 2359, 2372, 2371, 2353, 2357, 2353], 'WindowCenter': [600.0, 597.0, 596.0, 595.0, 595.0, 595.0, 595.0, 595.0, 595.0, 595.0, 595.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 595.0, 594.0, 595.0, 595.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 595.0, 595.0, 596.0, 596.0, 596.0, 596.0, 596.0, 595.0, 595.0, 595.0, 595.0, 595.0, 595.0, 595.0, 595.0, 594.0, 594.0, 594.0, 595.0, 595.0, 595.0, 594.0, 594.0, 594.0, 594.0, 593.0, 593.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0, 592.0, 593.0, 593.0, 593.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 592.0, 591.0, 592.0, 592.0, 593.0, 591.0, 590.0, 591.0, 591.0, 591.0, 591.0, 592.0, 592.0, 593.0, 593.0, 593.0, 592.0, 591.0, 591.0, 590.0, 590.0, 590.0, 590.0, 590.0, 591.0, 593.0, 592.0, 591.0, 590.0, 589.0, 590.0, 592.0, 592.0, 593.0, 593.0, 593.0, 592.0, 591.0, 592.0, 591.0, 591.0, 591.0, 591.0, 590.0, 590.0, 591.0, 590.0, 590.0, 590.0, 591.0], 'WindowWidth': [1284.0, 1279.0, 1276.0, 1274.0, 1273.0, 1273.0, 1273.0, 1273.0, 1273.0, 1274.0, 1273.0, 1272.0, 1271.0, 1271.0, 1270.0, 1271.0, 1272.0, 1271.0, 1272.0, 1271.0, 1273.0, 1273.0, 1271.0, 1272.0, 1270.0, 1270.0, 1272.0, 1272.0, 1273.0, 1273.0, 1274.0, 1275.0, 1276.0, 1275.0, 1275.0, 1274.0, 1273.0, 1272.0, 1272.0, 1273.0, 1273.0, 1273.0, 1273.0, 1270.0, 1270.0, 1272.0, 1274.0, 1274.0, 1273.0, 1272.0, 1270.0, 1271.0, 1270.0, 1269.0, 1269.0, 1271.0, 1271.0, 1270.0, 1269.0, 1269.0, 1268.0, 1267.0, 1267.0, 1268.0, 1269.0, 1268.0, 1267.0, 1266.0, 1265.0, 1265.0, 1266.0, 1266.0, 1266.0, 1266.0, 1265.0, 1265.0, 1264.0, 1266.0, 1265.0, 1267.0, 1263.0, 1262.0, 1264.0, 1264.0, 1263.0, 1264.0, 1266.0, 1266.0, 1269.0, 1268.0, 1267.0, 1265.0, 1262.0, 1262.0, 1262.0, 1261.0, 1261.0, 1262.0, 1261.0, 1264.0, 1267.0, 1266.0, 1265.0, 1262.0, 1261.0, 1262.0, 1265.0, 1266.0, 1268.0, 1269.0, 1269.0, 1267.0, 1265.0, 1266.0, 1264.0, 1263.0, 1264.0, 1263.0, 1262.0, 1261.0, 1262.0, 1261.0, 1261.0, 1261.0, 1264.0]}, 'slices': {}}</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.002363577235772358</td></tr>
<tr><td colspan=3>aqi</td><td>0.006049211382113822</td></tr>
<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>32.68504783770493</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.152608441803279</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.007880270245902</td></tr>
<tr><td colspan=3>efc</td><td>0.5134</td></tr>
<tr><td colspan=3>fber</td><td>731.5623</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.13715295237597908</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>15</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>12.195121951219512</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.192630609240103</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.174902398367989</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.1525437251800947</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.250445704172226</td></tr>
<tr><td colspan=3>gcor</td><td>0.0206183</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.0021726044360548258</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.08146172761917114</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>123</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.1360458709259067</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>26.9933</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>9.8599</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>53.6587</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>20.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>366504.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>228.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>91.7242</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>1.274</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>211.3552</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>582.9899</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>552.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>98136.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>180.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1073.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>258.4201</td></tr>
<tr><td colspan=3>tsnr</td><td>48.2177115988452</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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Record specific artifacts
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<fieldset id="qcartifacts-group" class="form-group">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>