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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8017_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8017/figures/sub-8017_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8017/ses-01/func/sub-8017_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>b5470dff9b482c9629d1f146e5aa21b3</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>11:17:52.435000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.99137, -0.0233719, -0.128997, 0.0263063, 0.999431, 0.0210909]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0544656</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1723, -9117, 4435, 490, 22, -188, -99, -23]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
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|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>215.627</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3770337104797363, 0.06307527422904968, -0.30823373794555664, 104.931396484375], [0.056039370596408844, 2.3963639736175537, 0.058325450867414474, -107.56715393066406], [-0.30929961800575256, -0.05057014152407646, 2.3794095516204834, -30.331119537353516], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
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|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['111752.435000', '111753.635000', '111754.835000', '111756.035000', '111757.235000', '111758.435000', '111759.635000', '111800.835000', '111802.035000', '111803.235000', '111804.435000', '111805.635000', '111806.835000', '111808.035000', '111809.235000', '111810.435000', '111811.635000', '111812.835000', '111814.035000', '111815.235000', '111816.435000', '111817.635000', '111818.835000', '111820.035000', '111821.235000', '111822.435000', '111823.635000', '111824.835000', '111826.035000', '111827.235000', '111828.435000', '111829.635000', '111830.835000', '111832.035000', '111833.235000', '111834.435000', '111835.635000', '111836.835000', '111838.035000', '111839.235000', '111840.435000', '111841.635000', '111842.835000', '111844.035000', '111845.235000', '111846.435000', '111847.635000', '111848.835000', '111850.035000', '111851.235000', '111852.435000', '111853.635000', '111854.835000', '111856.035000', '111857.235000', '111858.435000', '111859.635000', '111900.835000', '111902.035000', '111903.235000', '111904.435000', '111905.635000', '111906.835000', '111908.035000', '111909.235000', '111910.435000', '111911.635000', '111912.835000', '111914.035000', '111915.235000', '111916.435000', '111917.635000', '111918.835000', '111920.035000', '111921.235000', '111922.435000', '111923.635000', '111924.835000', '111926.035000', '111927.235000', '111928.435000', '111929.635000', '111930.835000', '111932.035000', '111933.235000', '111934.435000', '111935.635000', '111936.835000', '111938.035000', '111939.235000', '111940.435000', '111941.635000', '111942.835000', '111944.035000', '111945.235000', '111946.435000', '111947.635000', '111948.835000', '111950.035000', '111951.235000', '111952.435000', '111953.635000', '111954.835000', '111956.035000', '111957.235000', '111958.435000', '111959.635000', '112000.835000', '112002.035000', '112003.235000', '112004.435000', '112005.635000', '112006.835000', '112008.035000', '112009.235000', '112010.435000', '112011.635000', '112012.835000', '112014.035000', '112015.235000', '112016.435000', '112017.635000', '112018.835000', '112020.035000', '112021.235000'], 'ContentTime': ['111817.769000', '111817.773000', '111817.775000', '111817.778000', '111817.780000', '111817.788000', '111817.790000', '111817.793000', '111817.796000', '111817.798000', '111817.801000', '111817.803000', '111817.806000', '111817.809000', '111817.811000', '111817.814000', '111817.816000', '111817.819000', '111817.821000', '111817.824000', '111817.827000', '111857.764000', '111857.767000', '111857.770000', '111857.772000', '111857.775000', '111857.778000', '111857.780000', '111857.783000', '111857.785000', '111857.788000', '111857.791000', '111857.793000', '111857.796000', '111857.799000', '111857.802000', '111857.804000', '111857.807000', '111857.809000', '111857.812000', '111857.815000', '111857.817000', '111857.820000', '111857.822000', '111857.825000', '111857.827000', '111857.830000', '111857.833000', '111857.835000', '111857.838000', '111857.840000', '111857.843000', '111857.846000', '111857.848000', '111937.765000', '111937.768000', '111937.771000', '111937.773000', '111937.776000', '111937.779000', '111937.781000', '111937.784000', '111937.786000', '111937.789000', '111937.792000', '111937.794000', '111937.797000', '111937.800000', '111937.802000', '111937.805000', '111937.807000', '111937.810000', '111937.812000', '111937.815000', '111937.818000', '111937.820000', '111937.823000', '111937.826000', '111937.828000', '111937.831000', '111937.833000', '111937.836000', '111937.839000', '111937.841000', '111937.844000', '111937.846000', '111937.849000', '112017.764000', '112017.767000', '112017.770000', '112017.773000', '112017.775000', '112017.778000', '112017.781000', '112017.783000', '112017.786000', '112017.789000', '112017.791000', '112017.794000', '112017.797000', '112017.799000', '112017.802000', '112017.804000', '112017.807000', '112017.810000', '112017.812000', '112017.815000', '112017.817000', '112017.820000', '112017.823000', '112017.825000', '112017.828000', '112017.830000', '112017.833000', '112017.836000', '112017.838000', '112017.841000', '112017.844000', '112017.846000', '112017.849000', '112017.851000', '112022.502000', '112022.505000', '112022.508000', '112022.510000'], 'InstanceCreationTime': ['111817.769000', '111817.773000', '111817.775000', '111817.778000', '111817.780000', '111817.788000', '111817.790000', '111817.793000', '111817.796000', '111817.798000', '111817.801000', '111817.803000', '111817.806000', '111817.809000', '111817.811000', '111817.814000', '111817.816000', '111817.819000', '111817.821000', '111817.824000', '111817.827000', '111857.764000', '111857.767000', '111857.770000', '111857.772000', '111857.775000', '111857.778000', '111857.780000', '111857.783000', '111857.785000', '111857.788000', '111857.791000', '111857.793000', '111857.796000', '111857.799000', '111857.802000', '111857.804000', '111857.807000', '111857.809000', '111857.812000', '111857.815000', '111857.817000', '111857.820000', '111857.822000', '111857.825000', '111857.827000', '111857.830000', '111857.833000', '111857.835000', '111857.838000', '111857.840000', '111857.843000', '111857.846000', '111857.848000', '111937.765000', '111937.768000', '111937.771000', '111937.773000', '111937.776000', '111937.779000', '111937.781000', '111937.784000', '111937.786000', '111937.789000', '111937.792000', '111937.794000', '111937.797000', '111937.800000', '111937.802000', '111937.805000', '111937.807000', '111937.810000', '111937.812000', '111937.815000', '111937.818000', '111937.820000', '111937.823000', '111937.826000', '111937.828000', '111937.831000', '111937.833000', '111937.836000', '111937.839000', '111937.841000', '111937.844000', '111937.846000', '111937.849000', '112017.764000', '112017.767000', '112017.770000', '112017.773000', '112017.775000', '112017.778000', '112017.781000', '112017.783000', '112017.786000', '112017.789000', '112017.791000', '112017.794000', '112017.797000', '112017.799000', '112017.802000', '112017.804000', '112017.807000', '112017.810000', '112017.812000', '112017.815000', '112017.817000', '112017.820000', '112017.823000', '112017.825000', '112017.828000', '112017.830000', '112017.833000', '112017.836000', '112017.838000', '112017.841000', '112017.844000', '112017.846000', '112017.849000', '112017.851000', '112022.502000', '112022.505000', '112022.508000', '112022.510000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2586, 2493, 2450, 2437, 2393, 2369, 2366, 2368, 2380, 2394, 2387, 2380, 2384, 2338, 2364, 2365, 2348, 2382, 2369, 2380, 2344, 2367, 2335, 2368, 2340, 2361, 2343, 2355, 2306, 2335, 2314, 2305, 2334, 2309, 2316, 2296, 2322, 2308, 2280, 2297, 2265, 2269, 2211, 2199, 2191, 2258, 2199, 2222, 2143, 2136, 2099, 2096, 2197, 2152, 2147, 2139, 2099, 2109, 2072, 2087, 2085, 2082, 2094, 2094, 2094, 2089, 2090, 2100, 2089, 2085, 2099, 2100, 2079, 2101, 2101, 2101, 2081, 2099, 2087, 2108, 2090, 2091, 2107, 2114, 2110, 2116, 2123, 2102, 2096, 2109, 2120, 2125, 2109, 2119, 2112, 2123, 2120, 2114, 2123, 2115, 2103, 2091, 2113, 2102, 2126, 2096, 2128, 2142, 2145, 2164, 2145, 2181, 2182, 2191, 2212, 2188, 2156, 2110, 2132, 2104, 2110, 2095, 2110, 2104, 2096], 'WindowCenter': [602.0, 599.0, 598.0, 597.0, 596.0, 595.0, 595.0, 595.0, 595.0, 596.0, 596.0, 596.0, 595.0, 595.0, 595.0, 596.0, 596.0, 597.0, 597.0, 597.0, 596.0, 596.0, 595.0, 596.0, 596.0, 596.0, 597.0, 597.0, 596.0, 596.0, 596.0, 595.0, 595.0, 595.0, 596.0, 596.0, 596.0, 596.0, 595.0, 596.0, 596.0, 596.0, 595.0, 594.0, 594.0, 594.0, 594.0, 594.0, 592.0, 592.0, 591.0, 591.0, 593.0, 593.0, 592.0, 592.0, 591.0, 591.0, 591.0, 591.0, 591.0, 591.0, 591.0, 590.0, 590.0, 590.0, 590.0, 591.0, 591.0, 591.0, 591.0, 591.0, 590.0, 590.0, 591.0, 591.0, 591.0, 592.0, 592.0, 592.0, 592.0, 592.0, 593.0, 593.0, 594.0, 594.0, 594.0, 593.0, 594.0, 594.0, 594.0, 595.0, 594.0, 594.0, 595.0, 594.0, 594.0, 594.0, 594.0, 594.0, 593.0, 592.0, 592.0, 591.0, 592.0, 592.0, 592.0, 593.0, 592.0, 593.0, 593.0, 594.0, 595.0, 596.0, 596.0, 595.0, 595.0, 594.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0], 'WindowWidth': [1288.0, 1283.0, 1279.0, 1276.0, 1274.0, 1273.0, 1272.0, 1272.0, 1274.0, 1275.0, 1275.0, 1274.0, 1273.0, 1272.0, 1272.0, 1274.0, 1276.0, 1278.0, 1278.0, 1277.0, 1275.0, 1275.0, 1274.0, 1274.0, 1275.0, 1276.0, 1277.0, 1279.0, 1276.0, 1276.0, 1275.0, 1273.0, 1274.0, 1274.0, 1275.0, 1276.0, 1276.0, 1275.0, 1274.0, 1276.0, 1276.0, 1275.0, 1273.0, 1271.0, 1271.0, 1272.0, 1271.0, 1271.0, 1269.0, 1267.0, 1265.0, 1265.0, 1269.0, 1269.0, 1268.0, 1268.0, 1266.0, 1266.0, 1265.0, 1265.0, 1266.0, 1265.0, 1264.0, 1263.0, 1263.0, 1263.0, 1263.0, 1265.0, 1266.0, 1266.0, 1265.0, 1265.0, 1263.0, 1264.0, 1265.0, 1266.0, 1266.0, 1268.0, 1267.0, 1267.0, 1267.0, 1268.0, 1270.0, 1271.0, 1272.0, 1272.0, 1271.0, 1270.0, 1271.0, 1272.0, 1273.0, 1274.0, 1273.0, 1273.0, 1274.0, 1273.0, 1272.0, 1272.0, 1273.0, 1272.0, 1271.0, 1268.0, 1267.0, 1266.0, 1267.0, 1267.0, 1269.0, 1270.0, 1269.0, 1270.0, 1271.0, 1273.0, 1274.0, 1276.0, 1276.0, 1274.0, 1275.0, 1273.0, 1272.0, 1272.0, 1272.0, 1271.0, 1271.0, 1271.0, 1270.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.001092016129032258</td></tr>
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<tr><td colspan=3>aqi</td><td>0.008824769435483869</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>31.76598113121953</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.0627469170731705</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9454562486991871</td></tr>
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<tr><td colspan=3>efc</td><td>0.5128</td></tr>
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<tr><td colspan=3>fber</td><td>741.077</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.13389853184367342</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>12</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>9.67741935483871</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.2610506187277295</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.2141478963530834</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.2162915930549256</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.35271236677518</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00826985</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.0022683595307171345</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.07996367663145065</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.14075669865298</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>30.5021</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>9.8282</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>53.9392</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>20.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>366644.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>227.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>93.3097</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>1.2255</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>213.6024</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>586.1129</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>555.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>97996.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>180.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1078.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>259.2528</td></tr>
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<tr><td colspan=3>tsnr</td><td>43.860123419435695</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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</h2>
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<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
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<div class="accordion-body">
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<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
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<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
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<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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</ul>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcartifacts-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
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Record specific artifacts
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</button>
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</h2>
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<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
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<div class="accordion-body">
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<fieldset id="qcartifacts-group" class="form-group">
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
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<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
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<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
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<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
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<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
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<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
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<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
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<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
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<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
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<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
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<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
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<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
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</div>
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</fieldset>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcextra-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
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Extra details
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</button>
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</h2>
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<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
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<div class="accordion-body">
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<div class="input-group">
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<span class="input-group-text">Comments</span>
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<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
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</div>
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<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
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<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
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<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
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</ul>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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</div>
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<div style="margin-top: 10px">
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<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
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<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
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</div>
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<script type="text/javascript">
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var MINIMUM_RATING_TIME = 10
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$('#qcslider').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 1.5 ) {
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$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
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} else if ( $(this).val() > 3.5 ) {
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$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
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} else if ( $(this).val() < 2.5 ) {
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$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-confidence').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 2.0 ) {
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$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-comments').bind('input propertychange', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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});
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$( '#btn-post' ).click( function() {
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var payload = read_form();
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var md5sum = "unspecified";
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var params = {
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'rating': payload['rating'],
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'md5sum': md5sum,
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'name': "",
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'comment': JSON.stringify(payload['artifacts'])
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};
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// disable development releases
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var authorization = $(this).val();
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var ratingReq = new XMLHttpRequest();
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ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
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ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
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ratingReq.setRequestHeader("Authorization", authorization);
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ratingReq.onload = function () {
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status = ratingReq.status;
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$('#btn-post').removeClass('btn-primary');
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$('#btn-post').attr('disabled', true);
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$('#btn-post').attr('aria-disabled', true);
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$('#btn-post').prop('disabled');
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$('#btn-post').addClass('disabled');
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$('#btn-post').removeClass('active');
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if (status === "201") {
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$('#btn-post').addClass('btn-success');
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$('#btn-post').html('Posted!');
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} else {
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$('#btn-post').addClass('btn-danger');
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$('#btn-post').html('Failed');
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};
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};
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ratingReq.send(JSON.stringify(params));
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});
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$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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var payload = read_form();
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});
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$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
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toggle_rating();
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});
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</script>
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</div>
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<script type="text/javascript">
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function toggle(id) {
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var element = document.getElementById(id);
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if(element.style.display == 'block')
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element.style.display = 'none';
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else
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element.style.display = 'block';
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}
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</script>
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</body>
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</html> |