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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8015_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8015/figures/sub-8015_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8015/ses-01/func/sub-8015_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>f01393584965db58ad8639368700b2ab</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>17:26:37.272500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.99636, -0.0332566, 0.0784873, 0.0347937, 0.999227, -0.0182979]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0465768</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1761, -9051, 4189, 364, -95, -156, 33, -30]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>245.597</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.389000177383423, 0.08342572301626205, 0.18676340579986572, 101.08338928222656], [0.07974020391702652, 2.395873785018921, -0.05030921474099159, -101.17401123046875], [0.18819110095500946, 0.04387340322136879, 2.392193078994751, -105.59710693359375], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['172637.272500', '172638.472500', '172639.672500', '172640.872500', '172642.072500', '172643.272500', '172644.472500', '172645.672500', '172646.872500', '172648.072500', '172649.272500', '172650.472500', '172651.672500', '172652.872500', '172654.072500', '172655.272500', '172656.472500', '172657.672500', '172658.872500', '172700.072500', '172701.272500', '172702.472500', '172703.672500', '172704.872500', '172706.072500', '172707.272500', '172708.472500', '172709.672500', '172710.872500', '172712.072500', '172713.272500', '172714.472500', '172715.672500', '172716.872500', '172718.072500', '172719.272500', '172720.472500', '172721.672500', '172722.872500', '172724.072500', '172725.272500', '172726.472500', '172727.672500', '172728.872500', '172730.072500', '172731.272500', '172732.472500', '172733.672500', '172734.872500', '172736.072500', '172737.272500', '172738.472500', '172739.672500', '172740.872500', '172742.072500', '172743.272500', '172744.472500', '172745.672500', '172746.872500', '172748.072500', '172749.272500', '172750.472500', '172751.672500', '172752.872500', '172754.072500', '172755.272500', '172756.472500', '172757.672500', '172758.872500', '172800.072500', '172801.272500', '172802.472500', '172803.672500', '172804.872500', '172806.072500', '172807.272500', '172808.472500', '172809.672500', '172810.872500', '172812.072500', '172813.272500', '172814.472500', '172815.672500', '172816.872500', '172818.072500', '172819.272500', '172820.472500', '172821.672500', '172822.872500', '172824.072500', '172825.272500', '172826.472500', '172827.672500', '172828.872500', '172830.072500', '172831.272500', '172832.472500', '172833.672500', '172834.872500', '172836.072500', '172837.272500', '172838.472500', '172839.672500', '172840.872500', '172842.072500', '172843.272500', '172844.472500', '172845.672500', '172846.872500', '172848.072500', '172849.272500', '172850.472500', '172851.672500', '172852.872500', '172854.072500', '172855.272500', '172856.472500', '172857.672500', '172858.872500', '172900.072500', '172901.272500', '172902.472500', '172903.672500', '172904.872500', '172906.072500'], 'ContentTime': ['172717.649000', '172717.652000', '172717.655000', '172717.658000', '172717.660000', '172717.663000', '172717.666000', '172717.668000', '172717.671000', '172717.674000', '172717.676000', '172717.679000', '172717.681000', '172717.684000', '172717.687000', '172717.689000', '172717.692000', '172717.694000', '172717.697000', '172717.704000', '172717.707000', '172717.709000', '172717.712000', '172717.714000', '172717.717000', '172717.719000', '172717.722000', '172717.725000', '172717.727000', '172717.730000', '172717.732000', '172717.735000', '172717.737000', '172757.645000', '172757.655000', '172757.657000', '172757.660000', '172757.662000', '172757.665000', '172757.668000', '172757.670000', '172757.673000', '172757.675000', '172757.678000', '172757.681000', '172757.683000', '172757.686000', '172757.689000', '172757.691000', '172757.694000', '172757.696000', '172757.699000', '172757.701000', '172757.704000', '172757.707000', '172757.709000', '172757.712000', '172757.715000', '172757.717000', '172757.720000', '172757.722000', '172757.725000', '172757.728000', '172757.730000', '172757.733000', '172757.735000', '172837.644000', '172837.647000', '172837.650000', '172837.653000', '172837.655000', '172837.658000', '172837.660000', '172837.663000', '172837.665000', '172837.668000', '172837.670000', '172837.673000', '172837.676000', '172837.678000', '172837.681000', '172837.684000', '172837.686000', '172837.689000', '172837.691000', '172837.694000', '172837.697000', '172837.699000', '172837.702000', '172837.704000', '172837.707000', '172837.710000', '172837.712000', '172837.715000', '172837.717000', '172837.720000', '172837.723000', '172837.725000', '172837.728000', '172907.718000', '172907.721000', '172907.724000', '172907.727000', '172907.730000', '172907.733000', '172907.736000', '172907.739000', '172907.741000', '172907.744000', '172907.747000', '172907.750000', '172907.752000', '172907.755000', '172907.757000', '172907.760000', '172907.763000', '172907.765000', '172907.785000', '172907.787000', '172907.790000', '172907.793000', '172907.805000', '172907.807000', '172907.810000', '172907.812000'], 'InstanceCreationTime': ['172717.649000', '172717.652000', '172717.655000', '172717.658000', '172717.660000', '172717.663000', '172717.666000', '172717.668000', '172717.671000', '172717.674000', '172717.676000', '172717.679000', '172717.681000', '172717.684000', '172717.687000', '172717.689000', '172717.692000', '172717.694000', '172717.697000', '172717.704000', '172717.707000', '172717.709000', '172717.712000', '172717.714000', '172717.717000', '172717.719000', '172717.722000', '172717.725000', '172717.727000', '172717.730000', '172717.732000', '172717.735000', '172717.737000', '172757.645000', '172757.655000', '172757.657000', '172757.660000', '172757.662000', '172757.665000', '172757.668000', '172757.670000', '172757.673000', '172757.675000', '172757.678000', '172757.681000', '172757.683000', '172757.686000', '172757.689000', '172757.691000', '172757.694000', '172757.696000', '172757.699000', '172757.701000', '172757.704000', '172757.707000', '172757.709000', '172757.712000', '172757.715000', '172757.717000', '172757.720000', '172757.722000', '172757.725000', '172757.728000', '172757.730000', '172757.733000', '172757.735000', '172837.644000', '172837.647000', '172837.650000', '172837.653000', '172837.655000', '172837.658000', '172837.660000', '172837.663000', '172837.665000', '172837.668000', '172837.670000', '172837.673000', '172837.676000', '172837.678000', '172837.681000', '172837.684000', '172837.686000', '172837.689000', '172837.691000', '172837.694000', '172837.697000', '172837.699000', '172837.702000', '172837.704000', '172837.707000', '172837.710000', '172837.712000', '172837.715000', '172837.717000', '172837.720000', '172837.723000', '172837.725000', '172837.728000', '172907.718000', '172907.721000', '172907.724000', '172907.727000', '172907.730000', '172907.733000', '172907.736000', '172907.739000', '172907.741000', '172907.744000', '172907.747000', '172907.750000', '172907.752000', '172907.755000', '172907.757000', '172907.760000', '172907.763000', '172907.765000', '172907.785000', '172907.787000', '172907.790000', '172907.793000', '172907.805000', '172907.807000', '172907.810000', '172907.812000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2061, 1969, 1939, 1933, 1920, 1921, 1903, 1912, 1908, 1930, 1912, 1917, 1908, 1933, 1927, 1910, 1926, 1932, 1917, 1926, 1899, 1910, 1912, 1921, 1919, 1916, 1904, 1907, 1916, 1908, 1898, 1894, 1906, 1916, 1906, 1893, 1912, 1903, 1901, 1926, 1909, 1897, 1900, 1900, 1908, 1908, 1897, 1891, 1900, 1896, 1890, 1926, 1895, 1891, 1896, 1900, 1911, 1926, 1907, 1911, 1913, 1925, 1919, 1909, 1918, 1909, 1910, 1894, 1916, 1897, 1906, 1903, 1910, 1902, 1906, 1912, 1911, 1925, 1909, 1919, 1892, 1918, 1904, 1923, 1905, 1901, 1902, 1904, 1889, 1924, 1896, 1918, 1881, 1898, 1888, 1901, 1896, 1896, 1902, 1889, 1904, 1882, 1908, 1884, 1891, 1884, 1884, 1878, 1891, 1885, 1903, 1892, 1892, 1909, 1895, 1904, 1881, 1884, 1896, 1887, 1906, 1904, 1900, 1888, 1912], 'WindowCenter': [568.0, 564.0, 562.0, 561.0, 560.0, 560.0, 560.0, 560.0, 560.0, 561.0, 561.0, 561.0, 560.0, 562.0, 562.0, 561.0, 561.0, 560.0, 560.0, 560.0, 560.0, 560.0, 560.0, 561.0, 561.0, 561.0, 560.0, 559.0, 558.0, 558.0, 559.0, 559.0, 559.0, 559.0, 560.0, 560.0, 561.0, 560.0, 560.0, 560.0, 560.0, 559.0, 558.0, 557.0, 556.0, 556.0, 556.0, 557.0, 558.0, 559.0, 559.0, 559.0, 559.0, 560.0, 560.0, 561.0, 563.0, 563.0, 564.0, 563.0, 562.0, 561.0, 561.0, 560.0, 561.0, 561.0, 562.0, 562.0, 562.0, 562.0, 561.0, 560.0, 561.0, 561.0, 562.0, 562.0, 562.0, 562.0, 561.0, 561.0, 560.0, 561.0, 560.0, 561.0, 561.0, 560.0, 560.0, 560.0, 559.0, 559.0, 559.0, 559.0, 559.0, 559.0, 559.0, 559.0, 559.0, 558.0, 558.0, 558.0, 558.0, 559.0, 559.0, 558.0, 558.0, 558.0, 558.0, 558.0, 558.0, 558.0, 559.0, 560.0, 560.0, 560.0, 560.0, 559.0, 558.0, 558.0, 558.0, 558.0, 559.0, 560.0, 560.0, 560.0, 561.0], 'WindowWidth': [1211.0, 1201.0, 1197.0, 1194.0, 1192.0, 1193.0, 1192.0, 1194.0, 1192.0, 1195.0, 1194.0, 1194.0, 1194.0, 1196.0, 1196.0, 1195.0, 1194.0, 1192.0, 1192.0, 1192.0, 1192.0, 1193.0, 1193.0, 1195.0, 1195.0, 1194.0, 1192.0, 1191.0, 1189.0, 1189.0, 1189.0, 1190.0, 1191.0, 1191.0, 1192.0, 1192.0, 1194.0, 1193.0, 1192.0, 1193.0, 1192.0, 1191.0, 1189.0, 1186.0, 1184.0, 1183.0, 1184.0, 1187.0, 1189.0, 1190.0, 1191.0, 1191.0, 1191.0, 1193.0, 1193.0, 1195.0, 1198.0, 1200.0, 1201.0, 1199.0, 1198.0, 1195.0, 1194.0, 1193.0, 1194.0, 1195.0, 1197.0, 1197.0, 1197.0, 1197.0, 1195.0, 1194.0, 1195.0, 1196.0, 1198.0, 1198.0, 1198.0, 1197.0, 1195.0, 1194.0, 1193.0, 1194.0, 1193.0, 1194.0, 1194.0, 1193.0, 1193.0, 1193.0, 1191.0, 1191.0, 1190.0, 1191.0, 1190.0, 1191.0, 1190.0, 1191.0, 1190.0, 1189.0, 1188.0, 1189.0, 1189.0, 1190.0, 1190.0, 1189.0, 1189.0, 1188.0, 1189.0, 1188.0, 1189.0, 1189.0, 1190.0, 1192.0, 1192.0, 1193.0, 1192.0, 1190.0, 1189.0, 1188.0, 1188.0, 1189.0, 1191.0, 1193.0, 1193.0, 1193.0, 1193.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0014268548387096774</td></tr>
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<tr><td colspan=3>aqi</td><td>0.005244933064516128</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>34.040295810081304</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.127278990081301</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.994753036260163</td></tr>
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<tr><td colspan=3>efc</td><td>0.4955</td></tr>
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<tr><td colspan=3>fber</td><td>733.5051</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.19417312024929292</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>57</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>45.96774193548387</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.005097850461636</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>2.8713774667143026</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.0527617337567814</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.0911543509138237</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0174925</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.018461327999830246</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.05311864987015724</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.228062860064651</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.3999998569488525</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>47.2395</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>9.6489</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>45.964</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>20.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>375379.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>177.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>77.6542</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.821</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>205.0893</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>549.5504</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>532.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>89261.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>147.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>974.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>238.7711</td></tr>
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<tr><td colspan=3>tsnr</td><td>48.869939079741016</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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</h2>
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<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
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<div class="accordion-body">
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<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
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<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
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<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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</ul>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcartifacts-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
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Record specific artifacts
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</button>
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</h2>
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<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
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<div class="accordion-body">
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<fieldset id="qcartifacts-group" class="form-group">
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
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<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
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<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
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<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
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<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
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<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
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<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
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<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
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<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
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<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
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<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
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<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
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</div>
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</fieldset>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcextra-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
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Extra details
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</button>
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</h2>
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<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
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<div class="accordion-body">
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<div class="input-group">
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<span class="input-group-text">Comments</span>
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<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
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</div>
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<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
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<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
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<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
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</ul>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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</div>
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<div style="margin-top: 10px">
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<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
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<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
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</div>
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<script type="text/javascript">
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var MINIMUM_RATING_TIME = 10
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$('#qcslider').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 1.5 ) {
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$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
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} else if ( $(this).val() > 3.5 ) {
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$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
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} else if ( $(this).val() < 2.5 ) {
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$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-confidence').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 2.0 ) {
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$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-comments').bind('input propertychange', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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});
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$( '#btn-post' ).click( function() {
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var payload = read_form();
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var md5sum = "unspecified";
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var params = {
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'rating': payload['rating'],
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'md5sum': md5sum,
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'name': "",
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'comment': JSON.stringify(payload['artifacts'])
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};
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// disable development releases
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var authorization = $(this).val();
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var ratingReq = new XMLHttpRequest();
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ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
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ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
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ratingReq.setRequestHeader("Authorization", authorization);
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ratingReq.onload = function () {
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status = ratingReq.status;
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$('#btn-post').removeClass('btn-primary');
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$('#btn-post').attr('disabled', true);
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$('#btn-post').attr('aria-disabled', true);
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$('#btn-post').prop('disabled');
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$('#btn-post').addClass('disabled');
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$('#btn-post').removeClass('active');
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if (status === "201") {
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$('#btn-post').addClass('btn-success');
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$('#btn-post').html('Posted!');
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} else {
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$('#btn-post').addClass('btn-danger');
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$('#btn-post').html('Failed');
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};
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};
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ratingReq.send(JSON.stringify(params));
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});
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$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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var payload = read_form();
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});
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$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
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toggle_rating();
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});
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</script>
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</div>
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<script type="text/javascript">
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function toggle(id) {
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var element = document.getElementById(id);
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if(element.style.display == 'block')
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element.style.display = 'none';
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else
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element.style.display = 'block';
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}
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</script>
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</body>
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</html> |