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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-05_session-01_subject-8014_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" style="">
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Problem loading figure sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" target="_blank">sub-8014/figures/sub-8014_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8014/ses-01/func/sub-8014_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>8de018a84e180b604834755b7c10a798</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>16:10:52.897500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.996601, 0.014862, 0.081029, -0.0114805, 0.99905, -0.0420397]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0501663</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1777, -9075, 4423, 477, -157, -280, 45, 0]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.47, 1.1]</td></tr>
|
|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>236.972</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3895771503448486, -0.027527064085006714, 0.195784330368042, 102.752685546875], [-0.03563505411148071, 2.39544939994812, -0.09831973165273666, -92.75927734375], [0.19428542256355286, 0.10079973936080933, 2.389979362487793, -86.37842559814453], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['161052.897500', '161054.097500', '161055.297500', '161056.497500', '161057.697500', '161058.897500', '161100.097500', '161101.297500', '161102.497500', '161103.697500', '161104.897500', '161106.097500', '161107.297500', '161108.497500', '161109.697500', '161110.897500', '161112.097500', '161113.297500', '161114.497500', '161115.697500', '161116.897500', '161118.097500', '161119.297500', '161120.497500', '161121.697500', '161122.897500', '161124.097500', '161125.297500', '161126.497500', '161127.697500', '161128.897500', '161130.097500', '161131.297500', '161132.497500', '161133.697500', '161134.897500', '161136.097500', '161137.297500', '161138.497500', '161139.697500', '161140.897500', '161142.097500', '161143.297500', '161144.497500', '161145.697500', '161146.897500', '161148.097500', '161149.297500', '161150.497500', '161151.697500', '161152.897500', '161154.097500', '161155.297500', '161156.497500', '161157.697500', '161158.897500', '161200.097500', '161201.297500', '161202.497500', '161203.697500', '161204.897500', '161206.097500', '161207.297500', '161208.497500', '161209.697500', '161210.897500', '161212.097500', '161213.297500', '161214.497500', '161215.697500', '161216.897500', '161218.097500', '161219.297500', '161220.497500', '161221.697500', '161222.897500', '161224.097500', '161225.297500', '161226.497500', '161227.697500', '161228.897500', '161230.097500', '161231.297500', '161232.497500', '161233.697500', '161234.897500', '161236.097500', '161237.297500', '161238.497500', '161239.697500', '161240.897500', '161242.097500', '161243.297500', '161244.497500', '161245.697500', '161246.897500', '161248.097500', '161249.297500', '161250.497500', '161251.697500', '161252.897500', '161254.097500', '161255.297500', '161256.497500', '161257.697500', '161258.897500', '161300.097500', '161301.297500', '161302.497500', '161303.697500', '161304.897500', '161306.097500', '161307.297500', '161308.497500', '161309.697500', '161310.897500', '161312.097500', '161313.297500', '161314.497500', '161315.697500', '161316.897500', '161318.097500', '161319.297500', '161320.497500', '161321.697500'], 'ContentTime': ['161124.415000', '161124.425000', '161124.428000', '161124.430000', '161124.446000', '161124.449000', '161124.451000', '161124.454000', '161124.457000', '161124.459000', '161124.462000', '161124.464000', '161124.467000', '161124.469000', '161124.472000', '161124.474000', '161124.477000', '161124.488000', '161124.490000', '161124.493000', '161124.500000', '161124.503000', '161124.505000', '161124.508000', '161124.510000', '161124.513000', '161204.412000', '161204.414000', '161204.417000', '161204.420000', '161204.422000', '161204.425000', '161204.427000', '161204.430000', '161204.433000', '161204.435000', '161204.438000', '161204.441000', '161204.443000', '161204.446000', '161204.448000', '161204.451000', '161204.454000', '161204.456000', '161204.459000', '161204.469000', '161204.471000', '161204.474000', '161204.476000', '161204.479000', '161204.482000', '161204.485000', '161204.487000', '161204.490000', '161204.492000', '161204.495000', '161204.498000', '161204.500000', '161204.503000', '161244.411000', '161244.414000', '161244.417000', '161244.420000', '161244.422000', '161244.425000', '161244.427000', '161244.430000', '161244.433000', '161244.435000', '161244.438000', '161244.440000', '161244.443000', '161244.446000', '161244.448000', '161244.451000', '161244.453000', '161244.456000', '161244.458000', '161244.461000', '161244.464000', '161244.466000', '161244.469000', '161244.472000', '161244.475000', '161244.478000', '161244.481000', '161244.484000', '161244.486000', '161244.489000', '161244.492000', '161244.494000', '161244.497000', '161322.966000', '161322.969000', '161322.972000', '161322.975000', '161322.977000', '161322.980000', '161322.982000', '161322.985000', '161322.987000', '161322.990000', '161322.992000', '161322.995000', '161322.998000', '161323.001000', '161323.004000', '161323.012000', '161323.014000', '161323.017000', '161323.020000', '161323.022000', '161323.025000', '161323.027000', '161323.030000', '161323.033000', '161323.035000', '161323.038000', '161323.041000', '161323.043000', '161323.046000', '161323.049000', '161323.051000', '161323.054000', '161323.056000'], 'InstanceCreationTime': ['161124.415000', '161124.425000', '161124.428000', '161124.430000', '161124.446000', '161124.449000', '161124.451000', '161124.454000', '161124.457000', '161124.459000', '161124.462000', '161124.464000', '161124.467000', '161124.469000', '161124.472000', '161124.474000', '161124.477000', '161124.488000', '161124.490000', '161124.493000', '161124.500000', '161124.503000', '161124.505000', '161124.508000', '161124.510000', '161124.513000', '161204.412000', '161204.414000', '161204.417000', '161204.420000', '161204.422000', '161204.425000', '161204.427000', '161204.430000', '161204.433000', '161204.435000', '161204.438000', '161204.441000', '161204.443000', '161204.446000', '161204.448000', '161204.451000', '161204.454000', '161204.456000', '161204.459000', '161204.469000', '161204.471000', '161204.474000', '161204.476000', '161204.479000', '161204.482000', '161204.485000', '161204.487000', '161204.490000', '161204.492000', '161204.495000', '161204.498000', '161204.500000', '161204.503000', '161244.411000', '161244.414000', '161244.417000', '161244.420000', '161244.422000', '161244.425000', '161244.427000', '161244.430000', '161244.433000', '161244.435000', '161244.438000', '161244.440000', '161244.443000', '161244.446000', '161244.448000', '161244.451000', '161244.453000', '161244.456000', '161244.458000', '161244.461000', '161244.464000', '161244.466000', '161244.469000', '161244.472000', '161244.475000', '161244.478000', '161244.481000', '161244.484000', '161244.486000', '161244.489000', '161244.492000', '161244.494000', '161244.497000', '161322.966000', '161322.969000', '161322.972000', '161322.975000', '161322.977000', '161322.980000', '161322.982000', '161322.985000', '161322.987000', '161322.990000', '161322.992000', '161322.995000', '161322.998000', '161323.001000', '161323.004000', '161323.012000', '161323.014000', '161323.017000', '161323.020000', '161323.022000', '161323.025000', '161323.027000', '161323.030000', '161323.033000', '161323.035000', '161323.038000', '161323.041000', '161323.043000', '161323.046000', '161323.049000', '161323.051000', '161323.054000', '161323.056000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2466, 2323, 2309, 2287, 2261, 2264, 2247, 2261, 2221, 2259, 2218, 2247, 2237, 2237, 2251, 2234, 2244, 2251, 2245, 2263, 2236, 2248, 2288, 2260, 2283, 2260, 2278, 2281, 2278, 2275, 2265, 2308, 2268, 2263, 2252, 2263, 2256, 2238, 2236, 2250, 2239, 2251, 2264, 2259, 2266, 2258, 2256, 2245, 2252, 2274, 2258, 2276, 2273, 2248, 2274, 2247, 2255, 2280, 2286, 2258, 2269, 2286, 2264, 2272, 2266, 2256, 2284, 2247, 2245, 2270, 2265, 2272, 2268, 2266, 2276, 2271, 2247, 2254, 2272, 2275, 2266, 2259, 2276, 2281, 2263, 2268, 2268, 2243, 2280, 2264, 2261, 2251, 2265, 2277, 2299, 2312, 2349, 2327, 2311, 2335, 2357, 2325, 2368, 2378, 2312, 2340, 2321, 2318, 2328, 2317, 2287, 2314, 2337, 2278, 2318, 2326, 2272, 2298, 2283, 2282, 2314, 2360, 2298, 2289, 2306], 'WindowCenter': [649.0, 645.0, 643.0, 643.0, 643.0, 642.0, 641.0, 641.0, 640.0, 639.0, 639.0, 639.0, 639.0, 639.0, 639.0, 639.0, 640.0, 641.0, 641.0, 641.0, 641.0, 642.0, 643.0, 643.0, 644.0, 643.0, 644.0, 644.0, 644.0, 644.0, 643.0, 643.0, 642.0, 642.0, 641.0, 642.0, 642.0, 641.0, 641.0, 641.0, 640.0, 640.0, 640.0, 641.0, 641.0, 642.0, 642.0, 642.0, 642.0, 642.0, 642.0, 643.0, 642.0, 641.0, 641.0, 640.0, 640.0, 641.0, 640.0, 640.0, 641.0, 641.0, 640.0, 640.0, 640.0, 639.0, 640.0, 639.0, 640.0, 641.0, 640.0, 641.0, 640.0, 640.0, 640.0, 640.0, 640.0, 640.0, 641.0, 641.0, 640.0, 641.0, 642.0, 642.0, 642.0, 643.0, 641.0, 641.0, 642.0, 642.0, 642.0, 642.0, 643.0, 644.0, 645.0, 645.0, 645.0, 645.0, 643.0, 644.0, 645.0, 646.0, 646.0, 646.0, 645.0, 644.0, 643.0, 642.0, 642.0, 642.0, 642.0, 642.0, 642.0, 642.0, 642.0, 641.0, 641.0, 641.0, 641.0, 642.0, 644.0, 644.0, 644.0, 643.0, 643.0], 'WindowWidth': [1396.0, 1386.0, 1381.0, 1379.0, 1379.0, 1378.0, 1376.0, 1375.0, 1371.0, 1371.0, 1369.0, 1369.0, 1369.0, 1369.0, 1370.0, 1371.0, 1373.0, 1374.0, 1374.0, 1374.0, 1375.0, 1376.0, 1380.0, 1380.0, 1381.0, 1379.0, 1381.0, 1381.0, 1382.0, 1381.0, 1380.0, 1379.0, 1377.0, 1376.0, 1375.0, 1377.0, 1377.0, 1374.0, 1374.0, 1374.0, 1373.0, 1373.0, 1372.0, 1373.0, 1375.0, 1377.0, 1378.0, 1376.0, 1377.0, 1377.0, 1377.0, 1378.0, 1377.0, 1375.0, 1375.0, 1372.0, 1373.0, 1374.0, 1372.0, 1373.0, 1374.0, 1375.0, 1373.0, 1372.0, 1371.0, 1370.0, 1371.0, 1371.0, 1372.0, 1374.0, 1373.0, 1373.0, 1372.0, 1372.0, 1373.0, 1372.0, 1372.0, 1373.0, 1374.0, 1374.0, 1373.0, 1374.0, 1377.0, 1378.0, 1378.0, 1378.0, 1376.0, 1375.0, 1376.0, 1377.0, 1377.0, 1377.0, 1379.0, 1382.0, 1383.0, 1385.0, 1383.0, 1383.0, 1380.0, 1381.0, 1383.0, 1386.0, 1387.0, 1385.0, 1383.0, 1381.0, 1380.0, 1378.0, 1377.0, 1377.0, 1377.0, 1377.0, 1377.0, 1376.0, 1375.0, 1375.0, 1374.0, 1374.0, 1375.0, 1378.0, 1381.0, 1382.0, 1382.0, 1380.0, 1378.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0023088709677419354</td></tr>
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<tr><td colspan=3>aqi</td><td>0.003804079032258065</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>37.86523558463415</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.2491084916260162</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0143884684552849</td></tr>
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<tr><td colspan=3>efc</td><td>0.5484</td></tr>
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<tr><td colspan=3>fber</td><td>534.6985</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.18376226669373286</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>60</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>48.38709677419355</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.5089153630972674</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.3181130157762957</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.5418457192205435</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.6667873542949616</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0116581</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.021480657160282135</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.1121087595820427</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>1.9663723282181023</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>49.8511</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>13.2836</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>65.0232</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>344204.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>14.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>268.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>114.1987</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.8503</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>248.9456</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>606.0858</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>562.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>120436.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>193.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1151.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>stdv</td><td>285.8043</td></tr>
|
|
<tr><td colspan=3>tsnr</td><td>52.93113806191832</td></tr>
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
|
|
<div class="card-header m-0">
|
|
Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |