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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8013/ses-01/func/sub-8013_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>83df6e73788d69c7181193e94f1e102d</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>13:53:19.495000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.997562, 0.0543138, -0.0438263, -0.0555977, 0.998043, -0.0286287]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0480046</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1749, -9087, 4383, 363, -43, -237, -162, 6]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.8675, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
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<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>218.677</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.391880750656128, -0.13330815732479095, -0.10124549269676208, 114.77777099609375], [-0.13022959232330322, 2.3930342197418213, -0.07438936084508896, -83.39673614501953], [-0.10508359968662262, 0.06864388287067413, 2.3967092037200928, -57.30762481689453], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
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|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['135319.495000', '135320.695000', '135321.895000', '135323.095000', '135324.295000', '135325.495000', '135326.695000', '135327.895000', '135329.095000', '135330.295000', '135331.495000', '135332.695000', '135333.895000', '135335.095000', '135336.295000', '135337.495000', '135338.695000', '135339.895000', '135341.095000', '135342.295000', '135343.495000', '135344.695000', '135345.895000', '135347.095000', '135348.295000', '135349.495000', '135350.695000', '135351.895000', '135353.095000', '135354.295000', '135355.495000', '135356.695000', '135357.895000', '135359.095000', '135400.295000', '135401.495000', '135402.695000', '135403.895000', '135405.095000', '135406.295000', '135407.495000', '135408.695000', '135409.895000', '135411.095000', '135412.295000', '135413.495000', '135414.695000', '135415.895000', '135417.095000', '135418.295000', '135419.495000', '135420.695000', '135421.895000', '135423.095000', '135424.295000', '135425.495000', '135426.695000', '135427.895000', '135429.095000', '135430.295000', '135431.495000', '135432.695000', '135433.895000', '135435.095000', '135436.295000', '135437.495000', '135438.695000', '135439.895000', '135441.095000', '135442.295000', '135443.495000', '135444.695000', '135445.895000', '135447.095000', '135448.295000', '135449.495000', '135450.695000', '135451.895000', '135453.095000', '135454.295000', '135455.495000', '135456.695000', '135457.895000', '135459.095000', '135500.295000', '135501.495000', '135502.695000', '135503.895000', '135505.095000', '135506.295000', '135507.495000', '135508.695000', '135509.895000', '135511.095000', '135512.295000', '135513.495000', '135514.695000', '135515.895000', '135517.095000', '135518.295000', '135519.495000', '135520.695000', '135521.895000', '135523.095000', '135524.295000', '135525.495000', '135526.695000', '135527.895000', '135529.095000', '135530.295000', '135531.495000', '135532.695000', '135533.895000', '135535.095000', '135536.295000', '135537.495000', '135538.695000', '135539.895000', '135541.095000', '135542.295000', '135543.495000', '135544.695000', '135545.895000', '135547.095000', '135548.295000'], 'ContentTime': ['135359.014000', '135359.018000', '135359.021000', '135359.024000', '135359.027000', '135359.036000', '135359.039000', '135359.042000', '135359.045000', '135359.059000', '135359.062000', '135359.064000', '135359.067000', '135359.070000', '135359.072000', '135359.075000', '135359.079000', '135359.081000', '135359.084000', '135359.087000', '135359.090000', '135359.093000', '135359.096000', '135359.099000', '135359.101000', '135359.104000', '135359.107000', '135359.109000', '135359.112000', '135359.114000', '135359.117000', '135359.120000', '135439.011000', '135439.013000', '135439.016000', '135439.018000', '135439.021000', '135439.029000', '135439.031000', '135439.034000', '135439.036000', '135439.039000', '135439.042000', '135439.044000', '135439.047000', '135439.049000', '135439.052000', '135439.055000', '135439.057000', '135439.060000', '135439.063000', '135439.065000', '135439.068000', '135439.070000', '135439.073000', '135439.076000', '135439.078000', '135439.081000', '135439.084000', '135439.086000', '135439.089000', '135439.092000', '135439.094000', '135439.097000', '135439.099000', '135439.102000', '135519.009000', '135519.012000', '135519.015000', '135519.018000', '135519.020000', '135519.023000', '135519.025000', '135519.028000', '135519.030000', '135519.033000', '135519.036000', '135519.038000', '135519.041000', '135519.044000', '135519.046000', '135519.049000', '135519.052000', '135519.054000', '135519.057000', '135519.059000', '135519.062000', '135519.065000', '135519.067000', '135519.070000', '135519.072000', '135519.075000', '135519.088000', '135519.091000', '135519.093000', '135519.096000', '135519.098000', '135519.101000', '135519.103000', '135549.435000', '135549.438000', '135549.441000', '135549.443000', '135549.446000', '135549.448000', '135549.451000', '135549.454000', '135549.456000', '135549.459000', '135549.461000', '135549.464000', '135549.467000', '135549.469000', '135549.472000', '135549.474000', '135549.477000', '135549.480000', '135549.495000', '135549.498000', '135549.500000', '135549.503000', '135549.506000', '135549.508000', '135549.511000', '135549.513000'], 'InstanceCreationTime': ['135359.014000', '135359.018000', '135359.021000', '135359.024000', '135359.027000', '135359.036000', '135359.039000', '135359.042000', '135359.045000', '135359.059000', '135359.062000', '135359.064000', '135359.067000', '135359.070000', '135359.072000', '135359.075000', '135359.079000', '135359.081000', '135359.084000', '135359.087000', '135359.090000', '135359.093000', '135359.096000', '135359.099000', '135359.101000', '135359.104000', '135359.107000', '135359.109000', '135359.112000', '135359.114000', '135359.117000', '135359.120000', '135439.011000', '135439.013000', '135439.016000', '135439.018000', '135439.021000', '135439.029000', '135439.031000', '135439.034000', '135439.036000', '135439.039000', '135439.042000', '135439.044000', '135439.047000', '135439.049000', '135439.052000', '135439.055000', '135439.057000', '135439.060000', '135439.063000', '135439.065000', '135439.068000', '135439.070000', '135439.073000', '135439.076000', '135439.078000', '135439.081000', '135439.084000', '135439.086000', '135439.089000', '135439.092000', '135439.094000', '135439.097000', '135439.099000', '135439.102000', '135519.009000', '135519.012000', '135519.015000', '135519.018000', '135519.020000', '135519.023000', '135519.025000', '135519.028000', '135519.030000', '135519.033000', '135519.036000', '135519.038000', '135519.041000', '135519.044000', '135519.046000', '135519.049000', '135519.052000', '135519.054000', '135519.057000', '135519.059000', '135519.062000', '135519.065000', '135519.067000', '135519.070000', '135519.072000', '135519.075000', '135519.088000', '135519.091000', '135519.093000', '135519.096000', '135519.098000', '135519.101000', '135519.103000', '135549.435000', '135549.438000', '135549.441000', '135549.443000', '135549.446000', '135549.448000', '135549.451000', '135549.454000', '135549.456000', '135549.459000', '135549.461000', '135549.464000', '135549.467000', '135549.469000', '135549.472000', '135549.474000', '135549.477000', '135549.480000', '135549.495000', '135549.498000', '135549.500000', '135549.503000', '135549.506000', '135549.508000', '135549.511000', '135549.513000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1886, 1746, 1668, 1828, 1565, 1542, 1576, 1530, 1538, 1557, 1679, 1638, 1673, 1659, 1707, 1652, 1756, 1655, 1720, 1913, 1714, 1810, 1962, 1706, 1709, 1594, 1841, 1815, 1680, 1628, 1864, 1594, 1710, 1695, 1662, 1934, 1741, 1707, 1848, 1648, 1912, 1629, 1742, 1794, 1672, 1713, 1758, 1752, 1789, 1745, 1849, 1728, 1867, 1669, 1662, 1705, 1699, 1781, 1671, 1768, 1738, 1778, 1737, 1704, 2017, 1682, 1809, 1673, 1818, 1675, 1802, 1844, 1681, 1716, 2029, 1752, 1634, 1709, 1707, 1665, 1762, 1746, 1707, 1718, 1699, 1705, 1788, 1792, 1724, 1791, 1690, 1877, 1678, 1824, 1701, 1749, 1894, 1813, 1706, 1646, 1631, 1690, 1728, 1721, 1699, 1708, 1807, 1698, 1685, 1697, 1845, 1779, 1764, 1694, 1780, 1742, 1665, 1988, 1735, 1704, 1740, 1702, 1899, 1952, 1814], 'WindowCenter': [567.0, 562.0, 559.0, 561.0, 556.0, 554.0, 555.0, 554.0, 554.0, 556.0, 557.0, 556.0, 556.0, 556.0, 557.0, 556.0, 558.0, 556.0, 557.0, 560.0, 556.0, 558.0, 560.0, 557.0, 557.0, 556.0, 559.0, 558.0, 556.0, 554.0, 558.0, 554.0, 556.0, 557.0, 556.0, 562.0, 559.0, 559.0, 562.0, 559.0, 563.0, 557.0, 559.0, 559.0, 557.0, 558.0, 558.0, 559.0, 559.0, 558.0, 560.0, 557.0, 559.0, 556.0, 556.0, 557.0, 556.0, 558.0, 556.0, 557.0, 556.0, 557.0, 556.0, 555.0, 560.0, 555.0, 557.0, 556.0, 558.0, 555.0, 558.0, 559.0, 557.0, 559.0, 563.0, 559.0, 558.0, 558.0, 558.0, 556.0, 558.0, 557.0, 556.0, 555.0, 555.0, 555.0, 556.0, 556.0, 555.0, 556.0, 555.0, 558.0, 554.0, 557.0, 555.0, 556.0, 558.0, 557.0, 557.0, 556.0, 557.0, 557.0, 558.0, 559.0, 559.0, 558.0, 559.0, 557.0, 556.0, 557.0, 559.0, 559.0, 560.0, 560.0, 563.0, 561.0, 560.0, 563.0, 558.0, 556.0, 555.0, 552.0, 556.0, 557.0, 556.0], 'WindowWidth': [1200.0, 1190.0, 1185.0, 1187.0, 1178.0, 1176.0, 1176.0, 1175.0, 1175.0, 1178.0, 1179.0, 1178.0, 1178.0, 1178.0, 1179.0, 1178.0, 1181.0, 1178.0, 1179.0, 1184.0, 1177.0, 1180.0, 1183.0, 1179.0, 1181.0, 1178.0, 1184.0, 1181.0, 1177.0, 1175.0, 1181.0, 1175.0, 1178.0, 1179.0, 1178.0, 1188.0, 1183.0, 1184.0, 1189.0, 1184.0, 1190.0, 1180.0, 1183.0, 1183.0, 1180.0, 1181.0, 1182.0, 1182.0, 1184.0, 1182.0, 1185.0, 1181.0, 1183.0, 1179.0, 1178.0, 1179.0, 1178.0, 1181.0, 1177.0, 1179.0, 1177.0, 1178.0, 1177.0, 1176.0, 1183.0, 1176.0, 1180.0, 1177.0, 1180.0, 1176.0, 1180.0, 1182.0, 1180.0, 1183.0, 1190.0, 1185.0, 1182.0, 1183.0, 1181.0, 1179.0, 1181.0, 1180.0, 1177.0, 1177.0, 1175.0, 1175.0, 1177.0, 1177.0, 1176.0, 1177.0, 1176.0, 1179.0, 1174.0, 1178.0, 1175.0, 1177.0, 1180.0, 1179.0, 1180.0, 1178.0, 1180.0, 1180.0, 1183.0, 1184.0, 1183.0, 1182.0, 1184.0, 1180.0, 1178.0, 1179.0, 1183.0, 1184.0, 1186.0, 1188.0, 1192.0, 1189.0, 1186.0, 1191.0, 1181.0, 1176.0, 1174.0, 1170.0, 1176.0, 1177.0, 1176.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0008906504065040651</td></tr>
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<tr><td colspan=3>aqi</td><td>0.007455615853658536</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>33.75795009483606</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1195655487704916</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9727713840163933</td></tr>
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<tr><td colspan=3>efc</td><td>0.5528</td></tr>
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<tr><td colspan=3>fber</td><td>436.7259</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.0823437635123531</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>3</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>2.4390243902439024</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.136268035749873</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.0725846723245978</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.1314278956053303</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.204791539319692</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0182911</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>0.038554418832063675</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.03937424719333649</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>123</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.2898390993465183</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>21.2515</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>13.2711</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>62.4502</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>359038.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>269.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>105.5523</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.6434</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>188.9956</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>515.2154</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>498.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>105602.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>144.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>906.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>217.4815</td></tr>
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<tr><td colspan=3>tsnr</td><td>45.920922121964395</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |