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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-stdev_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-background_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-zoomed_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-carpet_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-mean_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-brainmask_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-01_session-01_subject-8013_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg" style="">
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Problem loading figure sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg" target="_blank">sub-8013/figures/sub-8013_ses-01_task-RDMmotion_run-01_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8013/ses-01/func/sub-8013_ses-01_task-RDMmotion_run-01_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>1d8995923b4dd70bf6a09b79bdef1e81</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>13:29:51.222500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.997562, 0.0543138, -0.0438263, -0.0555977, 0.998043, -0.0286287]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-01</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0480046</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-01</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>7</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1749, -9087, 4383, 363, -43, -237, -162, 6]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>218.677</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.391880750656128, -0.13330815732479095, -0.10124549269676208, 114.77777099609375], [-0.13022959232330322, 2.3930342197418213, -0.07438936084508896, -83.39673614501953], [-0.10508359968662262, 0.06864388287067413, 2.3967092037200928, -57.30762481689453], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['132951.222500', '132952.422500', '132953.622500', '132954.822500', '132956.022500', '132957.222500', '132958.422500', '132959.622500', '133000.822500', '133002.022500', '133003.222500', '133004.422500', '133005.622500', '133006.822500', '133008.022500', '133009.222500', '133010.422500', '133011.622500', '133012.822500', '133014.022500', '133015.222500', '133016.422500', '133017.622500', '133018.822500', '133020.022500', '133021.222500', '133022.422500', '133023.622500', '133024.822500', '133026.022500', '133027.222500', '133028.422500', '133029.622500', '133030.822500', '133032.022500', '133033.222500', '133034.422500', '133035.622500', '133036.822500', '133038.022500', '133039.222500', '133040.422500', '133041.622500', '133042.822500', '133044.022500', '133045.222500', '133046.422500', '133047.622500', '133048.822500', '133050.022500', '133051.222500', '133052.422500', '133053.622500', '133054.822500', '133056.022500', '133057.222500', '133058.422500', '133059.622500', '133100.822500', '133102.022500', '133103.222500', '133104.422500', '133105.622500', '133106.822500', '133108.022500', '133109.222500', '133110.422500', '133111.622500', '133112.822500', '133114.022500', '133115.222500', '133116.422500', '133117.622500', '133118.822500', '133120.022500', '133121.222500', '133122.422500', '133123.622500', '133124.822500', '133126.022500', '133127.222500', '133128.422500', '133129.622500', '133130.822500', '133132.022500', '133133.222500', '133134.422500', '133135.622500', '133136.822500', '133138.022500', '133139.222500', '133140.422500', '133141.622500', '133142.822500', '133144.022500', '133145.222500', '133146.422500', '133147.622500', '133148.822500', '133150.022500', '133151.222500', '133152.422500', '133153.622500', '133154.822500', '133156.022500', '133157.222500', '133158.422500', '133159.622500', '133200.822500', '133202.022500', '133203.222500', '133204.422500', '133205.622500', '133206.822500', '133208.022500', '133209.222500', '133210.422500', '133211.622500', '133212.822500', '133214.022500', '133215.222500', '133216.422500', '133217.622500', '133218.822500', '133220.022500'], 'ContentTime': ['133031.925000', '133031.928000', '133031.930000', '133031.934000', '133031.936000', '133031.948000', '133031.951000', '133031.954000', '133031.956000', '133031.959000', '133031.961000', '133031.964000', '133031.967000', '133031.969000', '133031.972000', '133031.975000', '133031.977000', '133031.980000', '133031.983000', '133031.986000', '133031.989000', '133031.991000', '133032.003000', '133032.005000', '133032.008000', '133032.011000', '133032.013000', '133032.016000', '133032.018000', '133032.021000', '133032.024000', '133032.026000', '133032.029000', '133111.920000', '133111.923000', '133111.925000', '133111.928000', '133111.930000', '133111.933000', '133111.936000', '133111.938000', '133111.941000', '133111.944000', '133111.946000', '133111.949000', '133111.951000', '133111.954000', '133111.956000', '133111.959000', '133111.962000', '133111.964000', '133111.967000', '133111.969000', '133111.978000', '133111.981000', '133111.983000', '133111.986000', '133111.988000', '133111.991000', '133111.994000', '133111.996000', '133112.000000', '133112.003000', '133112.005000', '133112.008000', '133112.028000', '133112.031000', '133151.919000', '133151.922000', '133151.925000', '133151.927000', '133151.930000', '133151.933000', '133151.935000', '133151.949000', '133151.951000', '133151.954000', '133151.956000', '133151.959000', '133151.961000', '133151.964000', '133151.967000', '133151.969000', '133151.972000', '133151.974000', '133151.978000', '133151.981000', '133151.984000', '133151.986000', '133151.989000', '133151.991000', '133151.994000', '133151.997000', '133152.000000', '133152.003000', '133152.005000', '133152.008000', '133152.011000', '133152.013000', '133152.016000', '133221.211000', '133221.214000', '133221.217000', '133221.219000', '133221.222000', '133221.225000', '133221.227000', '133221.230000', '133221.232000', '133221.235000', '133221.238000', '133221.240000', '133221.243000', '133221.245000', '133221.248000', '133221.250000', '133221.253000', '133221.256000', '133221.258000', '133221.261000', '133221.264000', '133221.266000', '133221.269000', '133221.271000', '133221.274000'], 'InstanceCreationTime': ['133031.925000', '133031.928000', '133031.930000', '133031.934000', '133031.936000', '133031.948000', '133031.951000', '133031.954000', '133031.956000', '133031.959000', '133031.961000', '133031.964000', '133031.967000', '133031.969000', '133031.972000', '133031.975000', '133031.977000', '133031.980000', '133031.983000', '133031.986000', '133031.989000', '133031.991000', '133032.003000', '133032.005000', '133032.008000', '133032.011000', '133032.013000', '133032.016000', '133032.018000', '133032.021000', '133032.024000', '133032.026000', '133032.029000', '133111.920000', '133111.923000', '133111.925000', '133111.928000', '133111.930000', '133111.933000', '133111.936000', '133111.938000', '133111.941000', '133111.944000', '133111.946000', '133111.949000', '133111.951000', '133111.954000', '133111.956000', '133111.959000', '133111.962000', '133111.964000', '133111.967000', '133111.969000', '133111.978000', '133111.981000', '133111.983000', '133111.986000', '133111.988000', '133111.991000', '133111.994000', '133111.996000', '133112.000000', '133112.003000', '133112.005000', '133112.008000', '133112.028000', '133112.031000', '133151.919000', '133151.922000', '133151.925000', '133151.927000', '133151.930000', '133151.933000', '133151.935000', '133151.949000', '133151.951000', '133151.954000', '133151.956000', '133151.959000', '133151.961000', '133151.964000', '133151.967000', '133151.969000', '133151.972000', '133151.974000', '133151.978000', '133151.981000', '133151.984000', '133151.986000', '133151.989000', '133151.991000', '133151.994000', '133151.997000', '133152.000000', '133152.003000', '133152.005000', '133152.008000', '133152.011000', '133152.013000', '133152.016000', '133221.211000', '133221.214000', '133221.217000', '133221.219000', '133221.222000', '133221.225000', '133221.227000', '133221.230000', '133221.232000', '133221.235000', '133221.238000', '133221.240000', '133221.243000', '133221.245000', '133221.248000', '133221.250000', '133221.253000', '133221.256000', '133221.258000', '133221.261000', '133221.264000', '133221.266000', '133221.269000', '133221.271000', '133221.274000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1743, 1675, 1655, 1653, 1640, 1656, 1633, 1637, 1672, 1633, 1646, 1628, 1632, 1630, 1631, 1631, 1662, 1626, 1666, 1644, 1647, 1612, 1614, 1619, 1644, 1636, 1626, 1644, 1638, 1630, 1631, 1649, 1621, 1619, 1660, 1619, 1629, 1655, 1645, 1620, 1660, 1634, 1638, 1652, 1624, 1614, 1632, 1621, 1633, 1638, 1630, 1657, 1626, 1647, 1629, 1630, 1640, 1620, 1634, 1637, 1635, 1724, 1646, 1637, 1630, 1654, 1643, 1633, 1663, 1634, 1655, 1653, 1629, 1637, 1648, 1628, 1650, 1681, 1632, 1652, 1619, 1633, 1625, 1906, 1608, 1662, 1628, 1658, 1674, 1637, 1672, 1633, 1633, 1660, 1629, 1649, 1644, 1644, 1644, 1615, 1744, 1661, 1803, 1646, 1662, 1776, 1634, 1715, 1633, 1656, 1716, 1648, 1649, 1649, 1645, 1622, 1729, 1791, 1765, 1635, 1781, 1710, 1637, 1687, 1644], 'WindowCenter': [564.0, 560.0, 559.0, 560.0, 560.0, 561.0, 561.0, 562.0, 562.0, 560.0, 560.0, 560.0, 560.0, 559.0, 559.0, 560.0, 561.0, 560.0, 561.0, 560.0, 560.0, 559.0, 558.0, 558.0, 558.0, 559.0, 559.0, 559.0, 560.0, 559.0, 559.0, 559.0, 558.0, 558.0, 559.0, 559.0, 559.0, 561.0, 560.0, 559.0, 560.0, 559.0, 559.0, 560.0, 558.0, 558.0, 558.0, 557.0, 557.0, 558.0, 559.0, 560.0, 559.0, 559.0, 559.0, 559.0, 559.0, 559.0, 558.0, 558.0, 558.0, 559.0, 558.0, 557.0, 557.0, 557.0, 556.0, 557.0, 558.0, 558.0, 558.0, 558.0, 557.0, 557.0, 556.0, 555.0, 556.0, 557.0, 557.0, 558.0, 557.0, 557.0, 556.0, 560.0, 556.0, 558.0, 557.0, 559.0, 559.0, 559.0, 559.0, 558.0, 558.0, 558.0, 557.0, 557.0, 557.0, 557.0, 557.0, 556.0, 558.0, 557.0, 559.0, 557.0, 558.0, 559.0, 557.0, 559.0, 556.0, 557.0, 557.0, 556.0, 557.0, 557.0, 557.0, 557.0, 559.0, 560.0, 561.0, 559.0, 561.0, 560.0, 558.0, 559.0, 557.0], 'WindowWidth': [1195.0, 1187.0, 1185.0, 1186.0, 1186.0, 1190.0, 1189.0, 1190.0, 1190.0, 1187.0, 1187.0, 1186.0, 1186.0, 1185.0, 1185.0, 1186.0, 1188.0, 1186.0, 1188.0, 1187.0, 1186.0, 1184.0, 1183.0, 1182.0, 1183.0, 1185.0, 1184.0, 1185.0, 1186.0, 1184.0, 1184.0, 1185.0, 1182.0, 1182.0, 1185.0, 1185.0, 1185.0, 1188.0, 1186.0, 1185.0, 1185.0, 1185.0, 1185.0, 1186.0, 1183.0, 1183.0, 1182.0, 1180.0, 1181.0, 1182.0, 1184.0, 1186.0, 1184.0, 1185.0, 1185.0, 1185.0, 1185.0, 1184.0, 1183.0, 1182.0, 1182.0, 1184.0, 1182.0, 1181.0, 1180.0, 1180.0, 1179.0, 1181.0, 1183.0, 1182.0, 1183.0, 1183.0, 1179.0, 1179.0, 1178.0, 1177.0, 1178.0, 1179.0, 1180.0, 1183.0, 1180.0, 1180.0, 1179.0, 1184.0, 1177.0, 1181.0, 1181.0, 1184.0, 1185.0, 1184.0, 1185.0, 1182.0, 1182.0, 1183.0, 1181.0, 1181.0, 1179.0, 1179.0, 1179.0, 1179.0, 1182.0, 1180.0, 1184.0, 1181.0, 1182.0, 1184.0, 1181.0, 1183.0, 1179.0, 1179.0, 1180.0, 1178.0, 1180.0, 1181.0, 1181.0, 1180.0, 1183.0, 1187.0, 1188.0, 1185.0, 1189.0, 1186.0, 1183.0, 1184.0, 1181.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.00097744</td></tr>
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<tr><td colspan=3>aqi</td><td>0.00414962848</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>35.47312210483871</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.2055966693548381</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0012801162903227</td></tr>
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<tr><td colspan=3>efc</td><td>0.5497</td></tr>
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<tr><td colspan=3>fber</td><td>454.7679</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.07825063144449361</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>0</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>0.0</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.1544635527458325</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.0524531081615747</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.1725585120908777</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.238379037985045</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0161948</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>0.03509281575679779</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.03789721056818962</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>125</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.2821777211109078</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>21.5289</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>13.3671</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>61.0299</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>24.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>358960.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>262.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>103.1724</td></tr>
|
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.6268</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>191.3921</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>518.9662</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>502.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>105680.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>142.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>913.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>219.9643</td></tr>
|
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<tr><td colspan=3>tsnr</td><td>53.320595026016235</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |