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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-06_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" style="">
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Problem loading figure sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8012/ses-01/func/sub-8012_ses-01_task-RDMmotion_run-06_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>42081ade687fe174d17408b3f77e9d7c</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>12:43:6.122500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999162, 0.0322067, 0.0252737, -0.0277346, 0.986599, -0.16079]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-06</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0513239</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-06</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>17</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1767, -9057, 4450, 426, -56, -141, -82, 20]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>218.178</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.395717144012451, -0.06649994850158691, 0.07227249443531036, 112.29190826416016], [-0.07722286134958267, 2.3655951023101807, -0.3838900029659271, -84.8451919555664], [0.060599494725465775, 0.38553038239479065, 2.3679959774017334, -72.6089859008789], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['124306.122500', '124307.322500', '124308.522500', '124309.722500', '124310.922500', '124312.122500', '124313.322500', '124314.522500', '124315.722500', '124316.922500', '124318.122500', '124319.322500', '124320.522500', '124321.722500', '124322.922500', '124324.122500', '124325.322500', '124326.522500', '124327.722500', '124328.922500', '124330.122500', '124331.322500', '124332.522500', '124333.722500', '124334.922500', '124336.122500', '124337.322500', '124338.522500', '124339.722500', '124340.922500', '124342.122500', '124343.322500', '124344.522500', '124345.722500', '124346.922500', '124348.122500', '124349.322500', '124350.522500', '124351.722500', '124352.922500', '124354.122500', '124355.322500', '124356.522500', '124357.722500', '124358.922500', '124400.122500', '124401.322500', '124402.522500', '124403.722500', '124404.922500', '124406.122500', '124407.322500', '124408.522500', '124409.722500', '124410.922500', '124412.122500', '124413.322500', '124414.522500', '124415.722500', '124416.922500', '124418.122500', '124419.322500', '124420.522500', '124421.722500', '124422.922500', '124424.122500', '124425.322500', '124426.522500', '124427.722500', '124428.922500', '124430.122500', '124431.322500', '124432.522500', '124433.722500', '124434.922500', '124436.122500', '124437.322500', '124438.522500', '124439.722500', '124440.922500', '124442.122500', '124443.322500', '124444.522500', '124445.722500', '124446.922500', '124448.122500', '124449.322500', '124450.522500', '124451.722500', '124452.922500', '124454.122500', '124455.322500', '124456.522500', '124457.722500', '124458.922500', '124500.122500', '124501.322500', '124502.522500', '124503.722500', '124504.922500', '124506.122500', '124507.322500', '124508.522500', '124509.722500', '124510.922500', '124512.122500', '124513.322500', '124514.522500', '124515.722500', '124516.922500', '124518.122500', '124519.322500', '124520.522500', '124521.722500', '124522.922500', '124524.122500', '124525.322500', '124526.522500', '124527.722500', '124528.922500', '124530.122500', '124531.322500', '124532.522500', '124533.722500', '124534.922500'], 'ContentTime': ['124339.014000', '124339.023000', '124339.026000', '124339.029000', '124339.035000', '124339.038000', '124339.040000', '124339.049000', '124339.051000', '124339.054000', '124339.057000', '124339.059000', '124339.062000', '124339.065000', '124339.067000', '124339.070000', '124339.072000', '124339.075000', '124339.078000', '124339.080000', '124339.083000', '124339.085000', '124339.088000', '124339.090000', '124339.093000', '124339.096000', '124339.115000', '124419.009000', '124419.012000', '124419.015000', '124419.018000', '124419.020000', '124419.023000', '124419.026000', '124419.028000', '124419.031000', '124419.033000', '124419.036000', '124419.038000', '124419.041000', '124419.044000', '124419.046000', '124419.049000', '124419.051000', '124419.059000', '124419.061000', '124419.064000', '124419.066000', '124419.069000', '124419.071000', '124419.074000', '124419.077000', '124419.079000', '124419.082000', '124419.084000', '124419.087000', '124419.089000', '124419.092000', '124419.095000', '124419.097000', '124459.009000', '124459.013000', '124459.015000', '124459.018000', '124459.020000', '124459.023000', '124459.026000', '124459.028000', '124459.031000', '124459.033000', '124459.036000', '124459.038000', '124459.041000', '124459.043000', '124459.046000', '124459.049000', '124459.051000', '124459.054000', '124459.056000', '124459.059000', '124459.061000', '124459.064000', '124459.067000', '124459.069000', '124459.072000', '124459.074000', '124459.077000', '124459.079000', '124459.082000', '124459.084000', '124459.087000', '124459.090000', '124459.097000', '124459.100000', '124535.991000', '124535.994000', '124535.997000', '124536.001000', '124536.004000', '124536.006000', '124536.009000', '124536.011000', '124536.014000', '124536.017000', '124536.020000', '124536.022000', '124536.025000', '124536.027000', '124536.030000', '124536.032000', '124536.035000', '124536.038000', '124536.040000', '124536.043000', '124536.046000', '124536.048000', '124536.051000', '124536.053000', '124536.056000', '124536.059000', '124536.061000', '124536.064000', '124536.066000', '124536.069000', '124536.071000'], 'InstanceCreationTime': ['124339.014000', '124339.023000', '124339.026000', '124339.029000', '124339.035000', '124339.038000', '124339.040000', '124339.049000', '124339.051000', '124339.054000', '124339.057000', '124339.059000', '124339.062000', '124339.065000', '124339.067000', '124339.070000', '124339.072000', '124339.075000', '124339.078000', '124339.080000', '124339.083000', '124339.085000', '124339.088000', '124339.090000', '124339.093000', '124339.096000', '124339.115000', '124419.009000', '124419.012000', '124419.015000', '124419.018000', '124419.020000', '124419.023000', '124419.026000', '124419.028000', '124419.031000', '124419.033000', '124419.036000', '124419.038000', '124419.041000', '124419.044000', '124419.046000', '124419.049000', '124419.051000', '124419.059000', '124419.061000', '124419.064000', '124419.066000', '124419.069000', '124419.071000', '124419.074000', '124419.077000', '124419.079000', '124419.082000', '124419.084000', '124419.087000', '124419.089000', '124419.092000', '124419.095000', '124419.097000', '124459.009000', '124459.013000', '124459.015000', '124459.018000', '124459.020000', '124459.023000', '124459.026000', '124459.028000', '124459.031000', '124459.033000', '124459.036000', '124459.038000', '124459.041000', '124459.043000', '124459.046000', '124459.049000', '124459.051000', '124459.054000', '124459.056000', '124459.059000', '124459.061000', '124459.064000', '124459.067000', '124459.069000', '124459.072000', '124459.074000', '124459.077000', '124459.079000', '124459.082000', '124459.084000', '124459.087000', '124459.090000', '124459.097000', '124459.100000', '124535.991000', '124535.994000', '124535.997000', '124536.001000', '124536.004000', '124536.006000', '124536.009000', '124536.011000', '124536.014000', '124536.017000', '124536.020000', '124536.022000', '124536.025000', '124536.027000', '124536.030000', '124536.032000', '124536.035000', '124536.038000', '124536.040000', '124536.043000', '124536.046000', '124536.048000', '124536.051000', '124536.053000', '124536.056000', '124536.059000', '124536.061000', '124536.064000', '124536.066000', '124536.069000', '124536.071000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2826, 2841, 2821, 2808, 2775, 2828, 2825, 2856, 2851, 2859, 2918, 2974, 2919, 2936, 2916, 2802, 2895, 2838, 2880, 2910, 2885, 2841, 2916, 2899, 2955, 2896, 2971, 2969, 2989, 2963, 3057, 2977, 3013, 3016, 3083, 3037, 3067, 3006, 3028, 2989, 3051, 2986, 3085, 2994, 3121, 3039, 3134, 3091, 3159, 3107, 3122, 3022, 3092, 2957, 3029, 2999, 3015, 2987, 3012, 2909, 2995, 2898, 2937, 2902, 2886, 2839, 2970, 2859, 2935, 2908, 2975, 2877, 2974, 2941, 2947, 2839, 2915, 2835, 2903, 2899, 2876, 2830, 2822, 2884, 2960, 2838, 2822, 2814, 2920, 2842, 2848, 2816, 2891, 2827, 2899, 2916, 2861, 2811, 2889, 2921, 2930, 2944, 3042, 3057, 3020, 3087, 3011, 2975, 2975, 3074, 2990, 3084, 3057, 2947, 3016, 2969, 3021, 3008, 2923, 2993, 2992, 2945, 2996, 2986, 2922], 'WindowCenter': [664.0, 662.0, 661.0, 660.0, 661.0, 662.0, 662.0, 663.0, 662.0, 663.0, 664.0, 665.0, 665.0, 664.0, 663.0, 662.0, 664.0, 664.0, 665.0, 665.0, 664.0, 663.0, 664.0, 665.0, 665.0, 665.0, 665.0, 665.0, 665.0, 665.0, 666.0, 666.0, 666.0, 666.0, 667.0, 667.0, 667.0, 666.0, 666.0, 666.0, 667.0, 666.0, 667.0, 666.0, 667.0, 666.0, 668.0, 668.0, 668.0, 668.0, 669.0, 668.0, 668.0, 667.0, 667.0, 667.0, 667.0, 666.0, 666.0, 665.0, 666.0, 665.0, 666.0, 665.0, 665.0, 665.0, 666.0, 665.0, 667.0, 666.0, 667.0, 666.0, 667.0, 666.0, 666.0, 665.0, 666.0, 666.0, 666.0, 666.0, 666.0, 666.0, 665.0, 666.0, 668.0, 666.0, 664.0, 663.0, 663.0, 661.0, 661.0, 660.0, 662.0, 661.0, 661.0, 661.0, 660.0, 660.0, 661.0, 662.0, 662.0, 663.0, 665.0, 667.0, 667.0, 668.0, 667.0, 666.0, 666.0, 667.0, 667.0, 668.0, 668.0, 667.0, 667.0, 667.0, 668.0, 668.0, 667.0, 667.0, 667.0, 666.0, 666.0, 666.0, 666.0], 'WindowWidth': [1433.0, 1428.0, 1424.0, 1423.0, 1425.0, 1427.0, 1426.0, 1429.0, 1427.0, 1427.0, 1430.0, 1432.0, 1433.0, 1431.0, 1427.0, 1426.0, 1431.0, 1431.0, 1433.0, 1434.0, 1431.0, 1429.0, 1431.0, 1432.0, 1434.0, 1433.0, 1434.0, 1433.0, 1434.0, 1434.0, 1436.0, 1434.0, 1435.0, 1434.0, 1437.0, 1437.0, 1438.0, 1436.0, 1436.0, 1435.0, 1437.0, 1436.0, 1437.0, 1434.0, 1438.0, 1436.0, 1439.0, 1439.0, 1441.0, 1440.0, 1442.0, 1440.0, 1440.0, 1438.0, 1439.0, 1437.0, 1438.0, 1435.0, 1435.0, 1434.0, 1436.0, 1434.0, 1435.0, 1434.0, 1434.0, 1433.0, 1436.0, 1434.0, 1437.0, 1436.0, 1438.0, 1437.0, 1437.0, 1435.0, 1436.0, 1434.0, 1436.0, 1435.0, 1436.0, 1435.0, 1435.0, 1435.0, 1434.0, 1436.0, 1439.0, 1437.0, 1431.0, 1428.0, 1428.0, 1424.0, 1423.0, 1421.0, 1425.0, 1425.0, 1423.0, 1422.0, 1420.0, 1421.0, 1424.0, 1425.0, 1427.0, 1430.0, 1434.0, 1437.0, 1437.0, 1440.0, 1438.0, 1435.0, 1435.0, 1438.0, 1439.0, 1441.0, 1440.0, 1437.0, 1439.0, 1439.0, 1441.0, 1440.0, 1438.0, 1439.0, 1437.0, 1435.0, 1437.0, 1436.0, 1435.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.00119416</td></tr>
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<tr><td colspan=3>aqi</td><td>0.00256148744</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>34.43138919362902</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.2136922252419355</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0117016734677422</td></tr>
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<tr><td colspan=3>efc</td><td>0.5412</td></tr>
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<tr><td colspan=3>fber</td><td>485.7632</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.1133481665536969</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>3</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>2.4</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.8657580402297427</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.6925300807722383</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.93581880335061</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.968925236566379</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0232249</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>0.00871988944709301</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.09474944323301315</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>125</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>1.9025034716866553</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.3999998569488525</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>48.9459</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>15.9291</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>74.6718</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>26.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>348805.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>14.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>293.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>151.8855</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>1.0172</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>257.5103</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>618.7207</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>568.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>115835.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>189.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1186.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>298.5527</td></tr>
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<tr><td colspan=3>tsnr</td><td>57.04863784275949</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |