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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8012/ses-01/func/sub-8012_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>87cd6bb598e811deb9c2a5bc83eb63f5</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>12:31:10.207500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999162, 0.0322067, 0.0252737, -0.0277346, 0.986599, -0.16079]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0513239</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1767, -9057, 4450, 426, -56, -141, -82, 20]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>218.178</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.395717144012451, -0.06649994850158691, 0.07227249443531036, 112.29190826416016], [-0.07722286134958267, 2.3655951023101807, -0.3838900029659271, -84.8451919555664], [0.060599494725465775, 0.38553038239479065, 2.3679959774017334, -72.6089859008789], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['123110.207500', '123111.407500', '123112.607500', '123113.807500', '123115.007500', '123116.207500', '123117.407500', '123118.607500', '123119.807500', '123121.007500', '123122.207500', '123123.407500', '123124.607500', '123125.807500', '123127.007500', '123128.207500', '123129.407500', '123130.607500', '123131.807500', '123133.007500', '123134.207500', '123135.407500', '123136.607500', '123137.807500', '123139.007500', '123140.207500', '123141.407500', '123142.607500', '123143.807500', '123145.007500', '123146.207500', '123147.407500', '123148.607500', '123149.807500', '123151.007500', '123152.207500', '123153.407500', '123154.607500', '123155.807500', '123157.007500', '123158.207500', '123159.407500', '123200.607500', '123201.807500', '123203.007500', '123204.207500', '123205.407500', '123206.607500', '123207.807500', '123209.007500', '123210.207500', '123211.407500', '123212.607500', '123213.807500', '123215.007500', '123216.207500', '123217.407500', '123218.607500', '123219.807500', '123221.007500', '123222.207500', '123223.407500', '123224.607500', '123225.807500', '123227.007500', '123228.207500', '123229.407500', '123230.607500', '123231.807500', '123233.007500', '123234.207500', '123235.407500', '123236.607500', '123237.807500', '123239.007500', '123240.207500', '123241.407500', '123242.607500', '123243.807500', '123245.007500', '123246.207500', '123247.407500', '123248.607500', '123249.807500', '123251.007500', '123252.207500', '123253.407500', '123254.607500', '123255.807500', '123257.007500', '123258.207500', '123259.407500', '123300.607500', '123301.807500', '123303.007500', '123304.207500', '123305.407500', '123306.607500', '123307.807500', '123309.007500', '123310.207500', '123311.407500', '123312.607500', '123313.807500', '123315.007500', '123316.207500', '123317.407500', '123318.607500', '123319.807500', '123321.007500', '123322.207500', '123323.407500', '123324.607500', '123325.807500', '123327.007500', '123328.207500', '123329.407500', '123330.607500', '123331.807500', '123333.007500', '123334.207500', '123335.407500', '123336.607500', '123337.807500', '123339.007500'], 'ContentTime': ['123140.295000', '123140.298000', '123140.307000', '123140.309000', '123140.312000', '123140.314000', '123140.317000', '123140.320000', '123140.322000', '123140.325000', '123140.327000', '123140.330000', '123140.333000', '123140.335000', '123140.338000', '123140.340000', '123140.343000', '123140.346000', '123140.352000', '123140.355000', '123140.357000', '123140.360000', '123140.362000', '123140.365000', '123140.367000', '123220.274000', '123220.277000', '123220.280000', '123220.283000', '123220.285000', '123220.288000', '123220.290000', '123220.293000', '123220.295000', '123220.298000', '123220.301000', '123220.304000', '123220.306000', '123220.309000', '123220.312000', '123220.314000', '123220.317000', '123220.319000', '123220.322000', '123220.325000', '123220.327000', '123220.330000', '123220.332000', '123220.350000', '123220.353000', '123220.355000', '123220.358000', '123220.360000', '123220.363000', '123220.366000', '123220.368000', '123220.371000', '123220.373000', '123300.274000', '123300.277000', '123300.280000', '123300.283000', '123300.285000', '123300.288000', '123300.290000', '123300.293000', '123300.295000', '123300.298000', '123300.301000', '123300.303000', '123300.306000', '123300.308000', '123300.311000', '123300.314000', '123300.316000', '123300.319000', '123300.322000', '123300.324000', '123300.327000', '123300.330000', '123300.332000', '123300.335000', '123300.338000', '123300.359000', '123300.362000', '123300.365000', '123300.367000', '123300.370000', '123300.372000', '123300.375000', '123300.377000', '123340.140000', '123340.143000', '123340.146000', '123340.149000', '123340.151000', '123340.154000', '123340.164000', '123340.166000', '123340.169000', '123340.172000', '123340.174000', '123340.177000', '123340.180000', '123340.182000', '123340.185000', '123340.187000', '123340.190000', '123340.193000', '123340.195000', '123340.198000', '123340.201000', '123340.203000', '123340.206000', '123340.208000', '123340.211000', '123340.214000', '123340.216000', '123340.219000', '123340.222000', '123340.224000', '123340.227000', '123340.229000', '123340.232000', '123340.235000'], 'InstanceCreationTime': ['123140.295000', '123140.298000', '123140.307000', '123140.309000', '123140.312000', '123140.314000', '123140.317000', '123140.320000', '123140.322000', '123140.325000', '123140.327000', '123140.330000', '123140.333000', '123140.335000', '123140.338000', '123140.340000', '123140.343000', '123140.346000', '123140.352000', '123140.355000', '123140.357000', '123140.360000', '123140.362000', '123140.365000', '123140.367000', '123220.274000', '123220.277000', '123220.280000', '123220.283000', '123220.285000', '123220.288000', '123220.290000', '123220.293000', '123220.295000', '123220.298000', '123220.301000', '123220.304000', '123220.306000', '123220.309000', '123220.312000', '123220.314000', '123220.317000', '123220.319000', '123220.322000', '123220.325000', '123220.327000', '123220.330000', '123220.332000', '123220.350000', '123220.353000', '123220.355000', '123220.358000', '123220.360000', '123220.363000', '123220.366000', '123220.368000', '123220.371000', '123220.373000', '123300.274000', '123300.277000', '123300.280000', '123300.283000', '123300.285000', '123300.288000', '123300.290000', '123300.293000', '123300.295000', '123300.298000', '123300.301000', '123300.303000', '123300.306000', '123300.308000', '123300.311000', '123300.314000', '123300.316000', '123300.319000', '123300.322000', '123300.324000', '123300.327000', '123300.330000', '123300.332000', '123300.335000', '123300.338000', '123300.359000', '123300.362000', '123300.365000', '123300.367000', '123300.370000', '123300.372000', '123300.375000', '123300.377000', '123340.140000', '123340.143000', '123340.146000', '123340.149000', '123340.151000', '123340.154000', '123340.164000', '123340.166000', '123340.169000', '123340.172000', '123340.174000', '123340.177000', '123340.180000', '123340.182000', '123340.185000', '123340.187000', '123340.190000', '123340.193000', '123340.195000', '123340.198000', '123340.201000', '123340.203000', '123340.206000', '123340.208000', '123340.211000', '123340.214000', '123340.216000', '123340.219000', '123340.222000', '123340.224000', '123340.227000', '123340.229000', '123340.232000', '123340.235000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [3110, 2976, 2922, 2943, 2876, 2886, 2889, 2811, 2833, 2827, 2887, 2914, 2900, 2874, 2931, 2852, 2927, 2850, 2814, 2820, 2832, 2816, 2875, 2851, 2931, 2912, 2987, 2967, 2959, 2942, 2891, 2885, 2792, 2811, 2818, 2894, 2894, 2906, 2883, 2824, 2814, 2802, 2750, 2796, 2762, 2754, 2798, 2772, 2768, 2750, 2660, 2635, 2644, 2693, 2701, 2656, 2754, 2789, 2814, 2820, 2783, 2792, 2788, 2816, 2778, 2704, 2806, 2809, 2836, 2875, 2874, 2904, 2905, 2951, 2949, 2922, 2878, 2843, 2753, 2754, 2789, 2772, 2825, 2845, 2880, 2862, 2869, 2916, 2923, 2921, 2926, 2949, 2887, 2870, 2878, 2836, 2746, 2741, 2719, 2643, 2700, 2730, 2775, 2760, 2771, 2742, 2730, 2748, 2723, 2645, 2706, 2760, 2788, 2852, 2867, 2860, 2804, 2714, 2677, 2780, 2833, 2888, 2925, 2904, 2895], 'WindowCenter': [673.0, 670.0, 668.0, 667.0, 666.0, 665.0, 665.0, 664.0, 664.0, 664.0, 665.0, 665.0, 665.0, 664.0, 665.0, 664.0, 664.0, 664.0, 663.0, 663.0, 664.0, 664.0, 664.0, 664.0, 664.0, 665.0, 666.0, 666.0, 665.0, 665.0, 664.0, 663.0, 662.0, 663.0, 664.0, 664.0, 665.0, 664.0, 664.0, 663.0, 663.0, 663.0, 663.0, 663.0, 663.0, 662.0, 663.0, 663.0, 662.0, 661.0, 661.0, 660.0, 660.0, 662.0, 662.0, 661.0, 663.0, 662.0, 663.0, 662.0, 662.0, 662.0, 661.0, 661.0, 661.0, 661.0, 662.0, 663.0, 663.0, 663.0, 664.0, 664.0, 665.0, 666.0, 666.0, 665.0, 664.0, 663.0, 662.0, 662.0, 662.0, 662.0, 662.0, 663.0, 663.0, 664.0, 663.0, 664.0, 664.0, 664.0, 665.0, 664.0, 665.0, 665.0, 664.0, 664.0, 662.0, 661.0, 661.0, 660.0, 661.0, 662.0, 662.0, 662.0, 662.0, 662.0, 663.0, 662.0, 661.0, 660.0, 661.0, 662.0, 664.0, 664.0, 664.0, 663.0, 661.0, 660.0, 660.0, 661.0, 663.0, 665.0, 664.0, 663.0, 662.0], 'WindowWidth': [1456.0, 1447.0, 1441.0, 1440.0, 1437.0, 1435.0, 1434.0, 1431.0, 1432.0, 1433.0, 1434.0, 1434.0, 1433.0, 1432.0, 1433.0, 1431.0, 1432.0, 1430.0, 1429.0, 1430.0, 1431.0, 1431.0, 1432.0, 1431.0, 1432.0, 1433.0, 1435.0, 1435.0, 1434.0, 1433.0, 1430.0, 1429.0, 1428.0, 1428.0, 1431.0, 1432.0, 1433.0, 1432.0, 1430.0, 1430.0, 1430.0, 1429.0, 1429.0, 1429.0, 1429.0, 1428.0, 1428.0, 1429.0, 1427.0, 1425.0, 1424.0, 1423.0, 1424.0, 1427.0, 1427.0, 1426.0, 1428.0, 1428.0, 1428.0, 1427.0, 1427.0, 1426.0, 1425.0, 1425.0, 1425.0, 1424.0, 1426.0, 1428.0, 1428.0, 1429.0, 1431.0, 1432.0, 1434.0, 1436.0, 1435.0, 1434.0, 1430.0, 1429.0, 1427.0, 1427.0, 1428.0, 1426.0, 1427.0, 1429.0, 1429.0, 1430.0, 1429.0, 1431.0, 1432.0, 1432.0, 1433.0, 1432.0, 1433.0, 1433.0, 1432.0, 1430.0, 1427.0, 1425.0, 1425.0, 1423.0, 1425.0, 1426.0, 1426.0, 1426.0, 1425.0, 1426.0, 1428.0, 1426.0, 1425.0, 1423.0, 1425.0, 1428.0, 1430.0, 1431.0, 1431.0, 1429.0, 1425.0, 1423.0, 1421.0, 1425.0, 1428.0, 1433.0, 1432.0, 1429.0, 1427.0]}, 'slices': {}}</td></tr>
</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0017824793388429754</td></tr>
<tr><td colspan=3>aqi</td><td>0.0026789694214876037</td></tr>
<tr><td colspan=3>dummy_trs</td><td>4</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>33.98785219183333</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.2067901949999997</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0125300458333335</td></tr>
<tr><td colspan=3>efc</td><td>0.5406</td></tr>
<tr><td colspan=3>fber</td><td>494.5513</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.11781126509909366</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>4</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>3.3057851239669422</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.8713523252767996</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.7236679009589237</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.9305763388482435</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.9598127360232316</td></tr>
<tr><td colspan=3>gcor</td><td>0.00851242</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>0.010934418067336082</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.09715769439935684</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>121</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>1.9083040477345623</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.3999998569488525</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>48.6154</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>16.0391</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>74.11</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>26.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>349195.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>292.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>150.5317</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>1.0525</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>255.0811</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>619.3274</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>568.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>115445.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>195.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1188.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>297.6452</td></tr>
<tr><td colspan=3>tsnr</td><td>57.56258740928024</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
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<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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<h2 class="accordion-header" id="qcartifacts-head">
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Record specific artifacts
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</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>