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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8012_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8012/figures/sub-8012_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8012/ses-01/func/sub-8012_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>54cde8d264abf89ff9bc077de99a88b9</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>12:06:51.840000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999162, 0.0322067, 0.0252737, -0.0277346, 0.986599, -0.16079]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0513239</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1767, -9057, 4450, 426, -56, -141, -82, 20]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025, 0.5525, 0, 0.63, 0.08, 0.71, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.395, 1.0225, 0.4725, 1.1025]</td></tr>
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<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
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|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>218.178</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.395717144012451, -0.06649994850158691, 0.07227249443531036, 112.29190826416016], [-0.07722286134958267, 2.3655951023101807, -0.3838900029659271, -84.8451919555664], [0.060599494725465775, 0.38553038239479065, 2.3679959774017334, -72.6089859008789], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
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<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
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|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['120651.840000', '120653.040000', '120654.240000', '120655.440000', '120656.640000', '120657.840000', '120659.040000', '120700.240000', '120701.440000', '120702.640000', '120703.840000', '120705.040000', '120706.240000', '120707.440000', '120708.640000', '120709.840000', '120711.040000', '120712.240000', '120713.440000', '120714.640000', '120715.840000', '120717.040000', '120718.240000', '120719.440000', '120720.640000', '120721.840000', '120723.040000', '120724.240000', '120725.440000', '120726.640000', '120727.840000', '120729.040000', '120730.240000', '120731.440000', '120732.640000', '120733.840000', '120735.040000', '120736.240000', '120737.440000', '120738.640000', '120739.840000', '120741.040000', '120742.240000', '120743.440000', '120744.640000', '120745.840000', '120747.040000', '120748.240000', '120749.440000', '120750.640000', '120751.840000', '120753.040000', '120754.240000', '120755.440000', '120756.640000', '120757.840000', '120759.040000', '120800.240000', '120801.440000', '120802.640000', '120803.840000', '120805.040000', '120806.240000', '120807.440000', '120808.640000', '120809.840000', '120811.040000', '120812.240000', '120813.440000', '120814.640000', '120815.840000', '120817.040000', '120818.240000', '120819.440000', '120820.640000', '120821.840000', '120823.040000', '120824.240000', '120825.440000', '120826.640000', '120827.840000', '120829.040000', '120830.240000', '120831.440000', '120832.640000', '120833.840000', '120835.040000', '120836.240000', '120837.440000', '120838.640000', '120839.840000', '120841.040000', '120842.240000', '120843.440000', '120844.640000', '120845.840000', '120847.040000', '120848.240000', '120849.440000', '120850.640000', '120851.840000', '120853.040000', '120854.240000', '120855.440000', '120856.640000', '120857.840000', '120859.040000', '120900.240000', '120901.440000', '120902.640000', '120903.840000', '120905.040000', '120906.240000', '120907.440000', '120908.640000', '120909.840000', '120911.040000', '120912.240000', '120913.440000', '120914.640000', '120915.840000', '120917.040000', '120918.240000', '120919.440000', '120920.640000'], 'ContentTime': ['120719.014000', '120719.017000', '120719.020000', '120719.022000', '120719.030000', '120719.033000', '120719.036000', '120719.038000', '120719.041000', '120719.043000', '120719.046000', '120719.052000', '120719.055000', '120719.057000', '120719.060000', '120719.063000', '120719.065000', '120719.068000', '120719.070000', '120719.073000', '120719.075000', '120719.078000', '120759.010000', '120759.012000', '120759.015000', '120759.017000', '120759.020000', '120759.023000', '120759.025000', '120759.028000', '120759.030000', '120759.033000', '120759.035000', '120759.038000', '120759.041000', '120759.043000', '120759.046000', '120759.048000', '120759.051000', '120759.053000', '120759.056000', '120759.058000', '120759.061000', '120759.064000', '120759.067000', '120759.069000', '120759.072000', '120759.074000', '120759.077000', '120759.079000', '120759.082000', '120759.084000', '120759.087000', '120759.097000', '120759.099000', '120839.010000', '120839.013000', '120839.016000', '120839.019000', '120839.021000', '120839.024000', '120839.027000', '120839.029000', '120839.032000', '120839.034000', '120839.037000', '120839.040000', '120839.042000', '120839.045000', '120839.048000', '120839.050000', '120839.053000', '120839.055000', '120839.058000', '120839.061000', '120839.063000', '120839.066000', '120839.069000', '120839.071000', '120839.074000', '120839.077000', '120839.079000', '120839.082000', '120839.085000', '120839.087000', '120839.090000', '120839.092000', '120839.095000', '120919.009000', '120919.012000', '120919.015000', '120919.018000', '120919.020000', '120919.023000', '120919.026000', '120919.028000', '120919.031000', '120919.034000', '120919.036000', '120919.039000', '120919.041000', '120919.048000', '120919.051000', '120919.053000', '120919.056000', '120919.058000', '120919.061000', '120919.063000', '120919.066000', '120919.068000', '120919.071000', '120919.074000', '120919.076000', '120919.079000', '120919.081000', '120919.084000', '120919.086000', '120919.089000', '120919.092000', '120919.094000', '120919.097000', '120919.099000', '120922.436000', '120922.438000', '120922.441000'], 'InstanceCreationTime': ['120719.014000', '120719.017000', '120719.020000', '120719.022000', '120719.030000', '120719.033000', '120719.036000', '120719.038000', '120719.041000', '120719.043000', '120719.046000', '120719.052000', '120719.055000', '120719.057000', '120719.060000', '120719.063000', '120719.065000', '120719.068000', '120719.070000', '120719.073000', '120719.075000', '120719.078000', '120759.010000', '120759.012000', '120759.015000', '120759.017000', '120759.020000', '120759.023000', '120759.025000', '120759.028000', '120759.030000', '120759.033000', '120759.035000', '120759.038000', '120759.041000', '120759.043000', '120759.046000', '120759.048000', '120759.051000', '120759.053000', '120759.056000', '120759.058000', '120759.061000', '120759.064000', '120759.067000', '120759.069000', '120759.072000', '120759.074000', '120759.077000', '120759.079000', '120759.082000', '120759.084000', '120759.087000', '120759.097000', '120759.099000', '120839.010000', '120839.013000', '120839.016000', '120839.019000', '120839.021000', '120839.024000', '120839.027000', '120839.029000', '120839.032000', '120839.034000', '120839.037000', '120839.040000', '120839.042000', '120839.045000', '120839.048000', '120839.050000', '120839.053000', '120839.055000', '120839.058000', '120839.061000', '120839.063000', '120839.066000', '120839.069000', '120839.071000', '120839.074000', '120839.077000', '120839.079000', '120839.082000', '120839.085000', '120839.087000', '120839.090000', '120839.092000', '120839.095000', '120919.009000', '120919.012000', '120919.015000', '120919.018000', '120919.020000', '120919.023000', '120919.026000', '120919.028000', '120919.031000', '120919.034000', '120919.036000', '120919.039000', '120919.041000', '120919.048000', '120919.051000', '120919.053000', '120919.056000', '120919.058000', '120919.061000', '120919.063000', '120919.066000', '120919.068000', '120919.071000', '120919.074000', '120919.076000', '120919.079000', '120919.081000', '120919.084000', '120919.086000', '120919.089000', '120919.092000', '120919.094000', '120919.097000', '120919.099000', '120922.436000', '120922.438000', '120922.441000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [3284, 3136, 3040, 3105, 3054, 3075, 3160, 3112, 3145, 3076, 2992, 2984, 2902, 2902, 2913, 2972, 2989, 2993, 3004, 3009, 2986, 2999, 2912, 2947, 2925, 2973, 3034, 3033, 3076, 3054, 3004, 2990, 3014, 3009, 2991, 2996, 2956, 2959, 2936, 2911, 2896, 2955, 3002, 2996, 2932, 2987, 3002, 2973, 2948, 3009, 3039, 3037, 3098, 3097, 3104, 3139, 3096, 3009, 3057, 3018, 3023, 2997, 3072, 3027, 3032, 3125, 3044, 3019, 3007, 2938, 2911, 2929, 2920, 2996, 2994, 2950, 2964, 2944, 2962, 2899, 2872, 2869, 2863, 2916, 2934, 2930, 2797, 2750, 2813, 2780, 2894, 2899, 2816, 2937, 2902, 3014, 3031, 2964, 2925, 2894, 2846, 2825, 2906, 2953, 2915, 2849, 2911, 2884, 2802, 2836, 2880, 2903, 2957, 3107, 3052, 3000, 2995, 2965, 3006, 2930, 3004, 3040, 3023, 3098, 3098], 'WindowCenter': [676.0, 671.0, 669.0, 670.0, 669.0, 669.0, 669.0, 670.0, 670.0, 668.0, 665.0, 664.0, 663.0, 663.0, 663.0, 664.0, 664.0, 664.0, 664.0, 665.0, 664.0, 664.0, 663.0, 663.0, 663.0, 665.0, 667.0, 667.0, 667.0, 667.0, 666.0, 665.0, 665.0, 665.0, 665.0, 665.0, 665.0, 665.0, 664.0, 664.0, 664.0, 664.0, 665.0, 665.0, 664.0, 665.0, 666.0, 665.0, 665.0, 665.0, 666.0, 666.0, 667.0, 668.0, 668.0, 667.0, 666.0, 665.0, 665.0, 665.0, 664.0, 664.0, 665.0, 665.0, 666.0, 668.0, 667.0, 666.0, 665.0, 664.0, 664.0, 664.0, 665.0, 666.0, 666.0, 665.0, 665.0, 665.0, 664.0, 663.0, 663.0, 663.0, 663.0, 664.0, 664.0, 663.0, 662.0, 661.0, 662.0, 662.0, 663.0, 663.0, 662.0, 664.0, 664.0, 666.0, 666.0, 665.0, 664.0, 664.0, 663.0, 664.0, 664.0, 665.0, 664.0, 663.0, 664.0, 664.0, 663.0, 664.0, 666.0, 665.0, 666.0, 668.0, 666.0, 664.0, 664.0, 662.0, 662.0, 662.0, 664.0, 666.0, 665.0, 666.0, 666.0], 'WindowWidth': [1462.0, 1449.0, 1443.0, 1445.0, 1443.0, 1444.0, 1444.0, 1445.0, 1445.0, 1441.0, 1435.0, 1430.0, 1428.0, 1428.0, 1429.0, 1431.0, 1432.0, 1432.0, 1431.0, 1432.0, 1430.0, 1431.0, 1428.0, 1429.0, 1429.0, 1433.0, 1437.0, 1437.0, 1438.0, 1437.0, 1435.0, 1434.0, 1434.0, 1434.0, 1433.0, 1433.0, 1434.0, 1432.0, 1431.0, 1431.0, 1430.0, 1432.0, 1433.0, 1433.0, 1432.0, 1434.0, 1435.0, 1433.0, 1433.0, 1433.0, 1435.0, 1436.0, 1439.0, 1439.0, 1440.0, 1438.0, 1436.0, 1432.0, 1434.0, 1433.0, 1432.0, 1431.0, 1432.0, 1434.0, 1436.0, 1439.0, 1438.0, 1435.0, 1434.0, 1432.0, 1430.0, 1432.0, 1433.0, 1434.0, 1435.0, 1433.0, 1432.0, 1432.0, 1432.0, 1428.0, 1428.0, 1429.0, 1429.0, 1431.0, 1430.0, 1428.0, 1425.0, 1424.0, 1426.0, 1426.0, 1428.0, 1428.0, 1426.0, 1431.0, 1432.0, 1436.0, 1437.0, 1433.0, 1430.0, 1430.0, 1429.0, 1430.0, 1432.0, 1432.0, 1432.0, 1429.0, 1430.0, 1430.0, 1429.0, 1432.0, 1435.0, 1434.0, 1435.0, 1439.0, 1435.0, 1431.0, 1430.0, 1427.0, 1427.0, 1427.0, 1431.0, 1435.0, 1434.0, 1436.0, 1434.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0013161206896551724</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0037971360344827582</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>9</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>34.69222592930435</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1695803209565212</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9808675111304351</td></tr>
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<tr><td colspan=3>efc</td><td>0.5405</td></tr>
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<tr><td colspan=3>fber</td><td>497.1466</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.12299181427122215</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>3</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>2.586206896551724</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.896542445993281</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.7294733986417343</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.959470367545452</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>4.000683571792656</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00772362</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>0.008997073397040367</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.09789377450942993</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>116</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>1.9124560873873477</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.3999998569488525</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>48.6662</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>14.9155</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>74.1094</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>25.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>348934.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>290.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>151.654</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>1.0301</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>255.1098</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>618.5207</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>568.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>115706.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>193.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1183.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>296.999</td></tr>
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<tr><td colspan=3>tsnr</td><td>51.67883112723939</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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</h2>
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<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
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<div class="accordion-body">
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<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
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<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
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<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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</ul>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcartifacts-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
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Record specific artifacts
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</button>
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</h2>
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<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
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<div class="accordion-body">
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<fieldset id="qcartifacts-group" class="form-group">
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
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<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
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<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
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<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
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<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
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<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
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<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
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<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
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<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
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<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
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<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
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<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
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</div>
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</fieldset>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcextra-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
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Extra details
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</button>
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</h2>
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<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
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<div class="accordion-body">
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<div class="input-group">
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<span class="input-group-text">Comments</span>
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<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
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</div>
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<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
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<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
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<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
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</ul>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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</div>
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<div style="margin-top: 10px">
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<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
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<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
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</div>
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<script type="text/javascript">
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var MINIMUM_RATING_TIME = 10
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$('#qcslider').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 1.5 ) {
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$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
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} else if ( $(this).val() > 3.5 ) {
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$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
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} else if ( $(this).val() < 2.5 ) {
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$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-confidence').on('input', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});
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$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
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return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
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});
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if ( $(this).val() < 2.0 ) {
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$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
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} else {
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$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
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};
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var payload = read_form();
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});
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$('#qcextra-comments').bind('input propertychange', function() {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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});
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$( '#btn-post' ).click( function() {
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var payload = read_form();
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var md5sum = "unspecified";
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var params = {
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'rating': payload['rating'],
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'md5sum': md5sum,
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'name': "",
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'comment': JSON.stringify(payload['artifacts'])
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};
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// disable development releases
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var authorization = $(this).val();
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var ratingReq = new XMLHttpRequest();
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ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
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ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
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ratingReq.setRequestHeader("Authorization", authorization);
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ratingReq.onload = function () {
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status = ratingReq.status;
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$('#btn-post').removeClass('btn-primary');
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$('#btn-post').attr('disabled', true);
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$('#btn-post').attr('aria-disabled', true);
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$('#btn-post').prop('disabled');
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$('#btn-post').addClass('disabled');
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$('#btn-post').removeClass('active');
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if (status === "201") {
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$('#btn-post').addClass('btn-success');
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$('#btn-post').html('Posted!');
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} else {
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$('#btn-post').addClass('btn-danger');
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$('#btn-post').html('Failed');
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};
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};
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ratingReq.send(JSON.stringify(params));
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});
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$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
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if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
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$('#btn-download').removeClass('disabled');
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$('#btn-download').removeAttr('aria-disabled');
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$('#btn-post').removeAttr('disabled');
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};
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var payload = read_form();
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});
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$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
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toggle_rating();
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});
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</script>
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</div>
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<script type="text/javascript">
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function toggle(id) {
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var element = document.getElementById(id);
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if(element.style.display == 'block')
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element.style.display = 'none';
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else
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element.style.display = 'block';
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}
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</script>
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</body>
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</html> |