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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-background_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-04_session-01_subject-8011_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" style="">
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Problem loading figure sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" target="_blank">sub-8011/figures/sub-8011_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8011/ses-01/func/sub-8011_ses-01_task-RDMmotion_run-04_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>4d20a697e151f6c0cf346e6684c8a87c</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>10:31:44.085000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.991968, -0.040582, 0.119806, 0.046086, 0.997988, -0.0435323]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.25</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-04</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.044438</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-04</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>13</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1754, -9132, 4447, 592, -215, -218, -40, 12]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.2375, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>217.084</td></tr>
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|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3784677982330322, 0.11050157994031906, 0.2827153503894806, 95.86100769042969], [0.0973045825958252, 2.392904281616211, -0.11688947677612305, -93.6602783203125], [0.28726133704185486, 0.10437847673892975, 2.3804221153259277, -68.33333587646484], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
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|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['103144.085000', '103145.285000', '103146.485000', '103147.685000', '103148.885000', '103150.085000', '103151.285000', '103152.485000', '103153.685000', '103154.885000', '103156.085000', '103157.285000', '103158.485000', '103159.685000', '103200.885000', '103202.085000', '103203.285000', '103204.485000', '103205.685000', '103206.885000', '103208.085000', '103209.285000', '103210.485000', '103211.685000', '103212.885000', '103214.085000', '103215.285000', '103216.485000', '103217.685000', '103218.885000', '103220.085000', '103221.285000', '103222.485000', '103223.685000', '103224.885000', '103226.085000', '103227.285000', '103228.485000', '103229.685000', '103230.885000', '103232.085000', '103233.285000', '103234.485000', '103235.685000', '103236.885000', '103238.085000', '103239.285000', '103240.485000', '103241.685000', '103242.885000', '103244.085000', '103245.285000', '103246.485000', '103247.685000', '103248.885000', '103250.085000', '103251.285000', '103252.485000', '103253.685000', '103254.885000', '103256.085000', '103257.285000', '103258.485000', '103259.685000', '103300.885000', '103302.085000', '103303.285000', '103304.485000', '103305.685000', '103306.885000', '103308.085000', '103309.285000', '103310.485000', '103311.685000', '103312.885000', '103314.085000', '103315.285000', '103316.485000', '103317.685000', '103318.885000', '103320.085000', '103321.285000', '103322.485000', '103323.685000', '103324.885000', '103326.085000', '103327.285000', '103328.485000', '103329.685000', '103330.885000', '103332.085000', '103333.285000', '103334.485000', '103335.685000', '103336.885000', '103338.085000', '103339.285000', '103340.485000', '103341.685000', '103342.885000', '103344.085000', '103345.285000', '103346.485000', '103347.685000', '103348.885000', '103350.085000', '103351.285000', '103352.485000', '103353.685000', '103354.885000', '103356.085000', '103357.285000', '103358.485000', '103359.685000', '103400.885000', '103402.085000', '103403.285000', '103404.485000', '103405.685000', '103406.885000', '103408.085000', '103409.285000', '103410.485000', '103411.685000', '103412.885000'], 'ContentTime': ['103217.071000', '103217.074000', '103217.077000', '103217.080000', '103217.082000', '103217.085000', '103217.088000', '103217.090000', '103217.093000', '103217.095000', '103217.098000', '103217.100000', '103217.103000', '103217.106000', '103217.108000', '103217.111000', '103217.113000', '103217.116000', '103217.118000', '103217.121000', '103217.130000', '103217.132000', '103217.135000', '103217.137000', '103217.140000', '103217.143000', '103257.067000', '103257.070000', '103257.072000', '103257.075000', '103257.077000', '103257.080000', '103257.083000', '103257.085000', '103257.088000', '103257.090000', '103257.093000', '103257.095000', '103257.098000', '103257.101000', '103257.103000', '103257.106000', '103257.108000', '103257.111000', '103257.113000', '103257.116000', '103257.122000', '103257.125000', '103257.128000', '103257.130000', '103257.133000', '103257.135000', '103257.138000', '103257.140000', '103257.143000', '103257.146000', '103257.148000', '103257.151000', '103257.154000', '103257.156000', '103337.068000', '103337.071000', '103337.074000', '103337.077000', '103337.080000', '103337.082000', '103337.085000', '103337.088000', '103337.090000', '103337.093000', '103337.095000', '103337.098000', '103337.100000', '103337.103000', '103337.106000', '103337.108000', '103337.111000', '103337.113000', '103337.116000', '103337.119000', '103337.121000', '103337.124000', '103337.126000', '103337.129000', '103337.131000', '103337.134000', '103337.137000', '103337.139000', '103337.142000', '103337.145000', '103337.147000', '103337.150000', '103337.152000', '103414.863000', '103414.866000', '103414.869000', '103414.871000', '103414.874000', '103414.876000', '103414.879000', '103414.882000', '103414.884000', '103414.887000', '103414.890000', '103414.892000', '103414.895000', '103414.898000', '103414.900000', '103414.903000', '103414.905000', '103414.908000', '103414.911000', '103414.913000', '103414.916000', '103414.919000', '103414.921000', '103414.924000', '103414.926000', '103414.929000', '103414.932000', '103414.934000', '103414.937000', '103414.940000', '103414.942000', '103414.945000'], 'InstanceCreationTime': ['103217.071000', '103217.074000', '103217.077000', '103217.080000', '103217.082000', '103217.085000', '103217.088000', '103217.090000', '103217.093000', '103217.095000', '103217.098000', '103217.100000', '103217.103000', '103217.106000', '103217.108000', '103217.111000', '103217.113000', '103217.116000', '103217.118000', '103217.121000', '103217.130000', '103217.132000', '103217.135000', '103217.137000', '103217.140000', '103217.143000', '103257.067000', '103257.070000', '103257.072000', '103257.075000', '103257.077000', '103257.080000', '103257.083000', '103257.085000', '103257.088000', '103257.090000', '103257.093000', '103257.095000', '103257.098000', '103257.101000', '103257.103000', '103257.106000', '103257.108000', '103257.111000', '103257.113000', '103257.116000', '103257.122000', '103257.125000', '103257.128000', '103257.130000', '103257.133000', '103257.135000', '103257.138000', '103257.140000', '103257.143000', '103257.146000', '103257.148000', '103257.151000', '103257.154000', '103257.156000', '103337.068000', '103337.071000', '103337.074000', '103337.077000', '103337.080000', '103337.082000', '103337.085000', '103337.088000', '103337.090000', '103337.093000', '103337.095000', '103337.098000', '103337.100000', '103337.103000', '103337.106000', '103337.108000', '103337.111000', '103337.113000', '103337.116000', '103337.119000', '103337.121000', '103337.124000', '103337.126000', '103337.129000', '103337.131000', '103337.134000', '103337.137000', '103337.139000', '103337.142000', '103337.145000', '103337.147000', '103337.150000', '103337.152000', '103414.863000', '103414.866000', '103414.869000', '103414.871000', '103414.874000', '103414.876000', '103414.879000', '103414.882000', '103414.884000', '103414.887000', '103414.890000', '103414.892000', '103414.895000', '103414.898000', '103414.900000', '103414.903000', '103414.905000', '103414.908000', '103414.911000', '103414.913000', '103414.916000', '103414.919000', '103414.921000', '103414.924000', '103414.926000', '103414.929000', '103414.932000', '103414.934000', '103414.937000', '103414.940000', '103414.942000', '103414.945000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1917, 1860, 1840, 1827, 1820, 1797, 1804, 1796, 1808, 1809, 1803, 1808, 1803, 1796, 1806, 1787, 1799, 1798, 1798, 1780, 1797, 1787, 1796, 1802, 1791, 1784, 1787, 1782, 1800, 1798, 1787, 1781, 1805, 1793, 1794, 1787, 1800, 1801, 1778, 1794, 1798, 1805, 1795, 1828, 1794, 1776, 1796, 1794, 1809, 1802, 1814, 1806, 1798, 1793, 1790, 1782, 1780, 1791, 1797, 1784, 1801, 1793, 1789, 1802, 1796, 1805, 1783, 1794, 1798, 1811, 1801, 1801, 1787, 1785, 1795, 1800, 1805, 1816, 1791, 1797, 1776, 1795, 1801, 1811, 1831, 1782, 1789, 1806, 1829, 1840, 1844, 1795, 1802, 1813, 1832, 1848, 1783, 1807, 1842, 1790, 1776, 1797, 1782, 1811, 1837, 1774, 1795, 1803, 1829, 1838, 1788, 1835, 1822, 1833, 1852, 1792, 1791, 1816, 1832, 1806, 1825, 1835, 1833, 1843, 1860], 'WindowCenter': [607.0, 604.0, 603.0, 602.0, 601.0, 602.0, 602.0, 602.0, 602.0, 601.0, 600.0, 600.0, 599.0, 599.0, 599.0, 598.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 599.0, 600.0, 599.0, 600.0, 600.0, 600.0, 600.0, 601.0, 600.0, 600.0, 600.0, 600.0, 601.0, 601.0, 601.0, 600.0, 600.0, 599.0, 600.0, 601.0, 599.0, 600.0, 600.0, 599.0, 597.0, 597.0, 596.0, 597.0, 597.0, 598.0, 598.0, 599.0, 600.0, 601.0, 601.0, 601.0, 602.0, 602.0, 602.0, 601.0, 601.0, 601.0, 601.0, 601.0, 601.0, 600.0, 601.0, 601.0, 601.0, 600.0, 600.0, 600.0, 601.0, 600.0, 601.0, 600.0, 600.0, 601.0, 600.0, 601.0, 601.0, 600.0, 601.0, 601.0, 600.0, 600.0, 601.0, 601.0, 601.0, 601.0, 601.0, 601.0, 601.0, 600.0, 600.0, 600.0, 601.0, 601.0, 600.0, 600.0, 600.0, 600.0, 601.0, 600.0, 601.0, 600.0, 601.0, 601.0, 600.0, 600.0, 600.0, 601.0, 602.0, 603.0, 602.0, 601.0, 600.0, 600.0], 'WindowWidth': [1290.0, 1283.0, 1279.0, 1277.0, 1276.0, 1277.0, 1277.0, 1277.0, 1277.0, 1276.0, 1273.0, 1272.0, 1271.0, 1270.0, 1270.0, 1270.0, 1270.0, 1271.0, 1271.0, 1271.0, 1272.0, 1271.0, 1271.0, 1270.0, 1270.0, 1270.0, 1270.0, 1271.0, 1272.0, 1272.0, 1272.0, 1273.0, 1274.0, 1274.0, 1275.0, 1274.0, 1274.0, 1274.0, 1274.0, 1275.0, 1276.0, 1275.0, 1274.0, 1273.0, 1271.0, 1274.0, 1274.0, 1272.0, 1272.0, 1274.0, 1271.0, 1267.0, 1265.0, 1265.0, 1266.0, 1266.0, 1268.0, 1269.0, 1270.0, 1273.0, 1275.0, 1275.0, 1276.0, 1276.0, 1276.0, 1276.0, 1275.0, 1275.0, 1275.0, 1276.0, 1274.0, 1274.0, 1274.0, 1275.0, 1275.0, 1274.0, 1272.0, 1273.0, 1274.0, 1274.0, 1274.0, 1274.0, 1274.0, 1274.0, 1275.0, 1273.0, 1275.0, 1275.0, 1274.0, 1275.0, 1275.0, 1273.0, 1274.0, 1276.0, 1275.0, 1275.0, 1275.0, 1276.0, 1276.0, 1274.0, 1273.0, 1272.0, 1273.0, 1275.0, 1275.0, 1274.0, 1274.0, 1273.0, 1274.0, 1274.0, 1272.0, 1274.0, 1273.0, 1274.0, 1274.0, 1273.0, 1274.0, 1273.0, 1276.0, 1279.0, 1280.0, 1277.0, 1274.0, 1273.0, 1272.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0012287903225806454</td></tr>
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<tr><td colspan=3>aqi</td><td>0.003543196290322581</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>30.228001354227658</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1402567159349588</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0012691057723582</td></tr>
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<tr><td colspan=3>efc</td><td>0.5426</td></tr>
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<tr><td colspan=3>fber</td><td>599.6882</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.14583641766501737</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>28</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>22.580645161290324</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.0593505328821977</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>2.9600322542455615</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.1225278007381476</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.095491543662884</td></tr>
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<tr><td colspan=3>gcor</td><td>0.0143108</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.015357350930571556</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.09699111431837082</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.366882937209371</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>44.0851</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>11.8249</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>53.4763</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>22.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>351423.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>197.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>87.471</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.4915</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>211.7968</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>575.0182</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>551.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>113217.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>214.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>992.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>232.7946</td></tr>
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<tr><td colspan=3>tsnr</td><td>56.035951748490334</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |