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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-05_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" style="">
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Problem loading figure sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8010/ses-01/func/sub-8010_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>22d6bdaa5766572e39ede5d9541e6ffd</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>18:34:51.725000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.9985, 0.0543661, 0.00641502, -0.0546012, 0.997484, 0.0452209]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC3-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0452555</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1757, -9231, 4402, 858, -28, -297, 415, -38]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
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|
<tr><td colspan=2>TxRefAmp</td><td>220.458</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.394131660461426, -0.13091884553432465, 0.009456954896450043, 113.38870239257812], [-0.13035497069358826, 2.3916938304901123, 0.10920804738998413, -99.42579650878906], [0.015381471253931522, -0.10842736810445786, 2.3974955081939697, -69.23463439941406], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['183451.725000', '183452.925000', '183454.125000', '183455.325000', '183456.525000', '183457.725000', '183458.925000', '183500.125000', '183501.325000', '183502.525000', '183503.725000', '183504.925000', '183506.125000', '183507.325000', '183508.525000', '183509.725000', '183510.925000', '183512.125000', '183513.325000', '183514.525000', '183515.725000', '183516.925000', '183518.125000', '183519.325000', '183520.525000', '183521.725000', '183522.925000', '183524.125000', '183525.325000', '183526.525000', '183527.725000', '183528.925000', '183530.125000', '183531.325000', '183532.525000', '183533.725000', '183534.925000', '183536.125000', '183537.325000', '183538.525000', '183539.725000', '183540.925000', '183542.125000', '183543.325000', '183544.525000', '183545.725000', '183546.925000', '183548.125000', '183549.325000', '183550.525000', '183551.725000', '183552.925000', '183554.125000', '183555.325000', '183556.525000', '183557.725000', '183558.925000', '183600.125000', '183601.325000', '183602.525000', '183603.725000', '183604.925000', '183606.125000', '183607.325000', '183608.525000', '183609.725000', '183610.925000', '183612.125000', '183613.325000', '183614.525000', '183615.725000', '183616.925000', '183618.125000', '183619.325000', '183620.525000', '183621.725000', '183622.925000', '183624.125000', '183625.325000', '183626.525000', '183627.725000', '183628.925000', '183630.125000', '183631.325000', '183632.525000', '183633.725000', '183634.925000', '183636.125000', '183637.325000', '183638.525000', '183639.725000', '183640.925000', '183642.125000', '183643.325000', '183644.525000', '183645.725000', '183646.925000', '183648.125000', '183649.325000', '183650.525000', '183651.725000', '183652.925000', '183654.125000', '183655.325000', '183656.525000', '183657.725000', '183658.925000', '183700.125000', '183701.325000', '183702.525000', '183703.725000', '183704.925000', '183706.125000', '183707.325000', '183708.525000', '183709.725000', '183710.925000', '183712.125000', '183713.325000', '183714.525000', '183715.725000', '183716.925000', '183718.125000', '183719.325000', '183720.525000'], 'ContentTime': ['183521.539000', '183521.542000', '183521.552000', '183521.555000', '183521.557000', '183521.563000', '183521.565000', '183521.568000', '183521.570000', '183521.573000', '183521.575000', '183521.578000', '183521.580000', '183521.587000', '183521.589000', '183521.592000', '183521.594000', '183521.597000', '183521.599000', '183521.602000', '183521.604000', '183521.607000', '183521.609000', '183521.612000', '183601.534000', '183601.537000', '183601.552000', '183601.555000', '183601.557000', '183601.560000', '183601.563000', '183601.565000', '183601.568000', '183601.570000', '183601.573000', '183601.575000', '183601.578000', '183601.580000', '183601.583000', '183601.585000', '183601.588000', '183601.591000', '183601.593000', '183601.596000', '183601.598000', '183601.601000', '183601.604000', '183601.606000', '183601.611000', '183601.614000', '183601.617000', '183601.619000', '183601.622000', '183601.625000', '183601.627000', '183601.630000', '183601.633000', '183641.534000', '183641.537000', '183641.540000', '183641.542000', '183641.545000', '183641.548000', '183641.550000', '183641.553000', '183641.555000', '183641.558000', '183641.560000', '183641.563000', '183641.565000', '183641.568000', '183641.570000', '183641.573000', '183641.575000', '183641.578000', '183641.580000', '183641.583000', '183641.586000', '183641.588000', '183641.591000', '183641.593000', '183641.596000', '183641.598000', '183641.601000', '183641.603000', '183641.606000', '183641.608000', '183641.611000', '183641.613000', '183641.616000', '183641.619000', '183721.535000', '183721.537000', '183721.540000', '183721.543000', '183721.545000', '183721.548000', '183721.550000', '183721.553000', '183721.555000', '183721.558000', '183721.560000', '183721.563000', '183721.591000', '183721.594000', '183721.596000', '183721.599000', '183721.602000', '183721.604000', '183721.607000', '183721.610000', '183721.612000', '183721.615000', '183721.618000', '183721.620000', '183721.623000', '183721.625000', '183721.628000', '183721.631000', '183721.633000', '183721.636000', '183721.638000', '183721.641000', '183721.643000', '183722.064000'], 'InstanceCreationTime': ['183521.539000', '183521.542000', '183521.552000', '183521.555000', '183521.557000', '183521.563000', '183521.565000', '183521.568000', '183521.570000', '183521.573000', '183521.575000', '183521.578000', '183521.580000', '183521.587000', '183521.589000', '183521.592000', '183521.594000', '183521.597000', '183521.599000', '183521.602000', '183521.604000', '183521.607000', '183521.609000', '183521.612000', '183601.534000', '183601.537000', '183601.552000', '183601.555000', '183601.557000', '183601.560000', '183601.563000', '183601.565000', '183601.568000', '183601.570000', '183601.573000', '183601.575000', '183601.578000', '183601.580000', '183601.583000', '183601.585000', '183601.588000', '183601.591000', '183601.593000', '183601.596000', '183601.598000', '183601.601000', '183601.604000', '183601.606000', '183601.611000', '183601.614000', '183601.617000', '183601.619000', '183601.622000', '183601.625000', '183601.627000', '183601.630000', '183601.633000', '183641.534000', '183641.537000', '183641.540000', '183641.542000', '183641.545000', '183641.548000', '183641.550000', '183641.553000', '183641.555000', '183641.558000', '183641.560000', '183641.563000', '183641.565000', '183641.568000', '183641.570000', '183641.573000', '183641.575000', '183641.578000', '183641.580000', '183641.583000', '183641.586000', '183641.588000', '183641.591000', '183641.593000', '183641.596000', '183641.598000', '183641.601000', '183641.603000', '183641.606000', '183641.608000', '183641.611000', '183641.613000', '183641.616000', '183641.619000', '183721.535000', '183721.537000', '183721.540000', '183721.543000', '183721.545000', '183721.548000', '183721.550000', '183721.553000', '183721.555000', '183721.558000', '183721.560000', '183721.563000', '183721.591000', '183721.594000', '183721.596000', '183721.599000', '183721.602000', '183721.604000', '183721.607000', '183721.610000', '183721.612000', '183721.615000', '183721.618000', '183721.620000', '183721.623000', '183721.625000', '183721.628000', '183721.631000', '183721.633000', '183721.636000', '183721.638000', '183721.641000', '183721.643000', '183722.064000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2137, 2117, 2107, 2118, 2105, 2119, 2135, 2137, 2170, 2108, 2095, 2130, 2115, 2115, 2101, 2080, 2105, 2082, 2146, 2161, 2110, 2130, 2101, 2127, 2145, 2151, 2146, 2125, 2124, 2136, 2145, 2119, 2110, 2116, 2118, 2121, 2124, 2101, 2086, 2155, 2132, 2122, 2098, 2068, 2099, 2105, 2093, 2100, 2095, 2072, 2103, 2128, 2149, 2130, 2116, 2079, 2116, 2120, 2115, 2093, 2103, 2158, 2116, 2109, 2137, 2131, 2108, 2116, 2113, 2151, 2115, 2143, 2135, 2151, 2121, 2085, 2090, 2113, 2131, 2106, 2096, 2104, 2115, 2081, 2083, 2119, 2094, 2153, 2132, 2131, 2101, 2094, 2125, 2120, 2108, 2126, 2109, 2154, 2128, 2143, 2147, 2122, 2121, 2141, 2087, 2083, 2106, 2113, 2079, 2118, 2127, 2110, 2127, 2153, 2109, 2109, 2131, 2111, 2155, 2131, 2063, 2084, 2087, 2076, 2094], 'WindowCenter': [578.0, 576.0, 575.0, 576.0, 575.0, 576.0, 576.0, 576.0, 576.0, 574.0, 575.0, 575.0, 575.0, 575.0, 574.0, 574.0, 574.0, 574.0, 575.0, 575.0, 574.0, 575.0, 576.0, 577.0, 576.0, 575.0, 574.0, 573.0, 573.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 575.0, 574.0, 573.0, 574.0, 573.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 576.0, 576.0, 576.0, 576.0, 575.0, 574.0, 574.0, 574.0, 575.0, 575.0, 575.0, 576.0, 575.0, 575.0, 575.0, 575.0, 576.0, 576.0, 576.0, 576.0, 575.0, 575.0, 575.0, 574.0, 574.0, 573.0, 574.0, 574.0, 574.0, 574.0, 574.0, 574.0, 575.0, 574.0, 574.0, 575.0, 576.0, 576.0, 575.0, 576.0, 575.0, 575.0, 576.0, 576.0, 576.0, 576.0, 576.0, 577.0, 577.0, 576.0, 576.0, 575.0, 575.0, 575.0, 574.0, 574.0, 574.0, 575.0, 574.0, 575.0, 574.0, 575.0, 575.0, 576.0, 575.0, 576.0, 577.0, 575.0, 574.0, 573.0, 572.0, 573.0, 572.0, 573.0, 575.0], 'WindowWidth': [1238.0, 1233.0, 1231.0, 1233.0, 1232.0, 1234.0, 1234.0, 1234.0, 1234.0, 1230.0, 1231.0, 1232.0, 1231.0, 1231.0, 1230.0, 1229.0, 1230.0, 1229.0, 1231.0, 1231.0, 1230.0, 1232.0, 1233.0, 1236.0, 1234.0, 1231.0, 1230.0, 1228.0, 1228.0, 1230.0, 1229.0, 1229.0, 1229.0, 1230.0, 1230.0, 1228.0, 1229.0, 1229.0, 1229.0, 1231.0, 1229.0, 1228.0, 1228.0, 1228.0, 1229.0, 1230.0, 1228.0, 1228.0, 1230.0, 1230.0, 1233.0, 1234.0, 1234.0, 1234.0, 1231.0, 1230.0, 1230.0, 1229.0, 1232.0, 1231.0, 1232.0, 1233.0, 1231.0, 1231.0, 1231.0, 1232.0, 1232.0, 1233.0, 1233.0, 1233.0, 1231.0, 1231.0, 1231.0, 1230.0, 1230.0, 1228.0, 1229.0, 1230.0, 1229.0, 1229.0, 1230.0, 1230.0, 1231.0, 1229.0, 1230.0, 1232.0, 1233.0, 1235.0, 1232.0, 1233.0, 1232.0, 1232.0, 1233.0, 1233.0, 1234.0, 1235.0, 1235.0, 1236.0, 1235.0, 1235.0, 1234.0, 1232.0, 1231.0, 1231.0, 1229.0, 1229.0, 1230.0, 1230.0, 1230.0, 1231.0, 1230.0, 1232.0, 1232.0, 1234.0, 1232.0, 1233.0, 1236.0, 1232.0, 1229.0, 1227.0, 1224.0, 1226.0, 1225.0, 1228.0, 1232.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.00134241935483871</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0038450195161290326</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>34.05802608894309</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1463228932520324</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0098118609756097</td></tr>
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<tr><td colspan=3>efc</td><td>0.4996</td></tr>
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<tr><td colspan=3>fber</td><td>747.8973</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.1603110312568852</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>35</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>28.225806451612904</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.320753232497431</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.2908121624489386</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.3195060015708777</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.3519415334724774</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00929075</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>0.00809287279844284</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.06065408140420914</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>1.9383943784422026</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>26.4803</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>9.9956</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>44.3524</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>19.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>363466.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>11.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>175.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>76.4195</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>1.4404</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>207.3551</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>544.26</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>506.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>101174.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>133.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1027.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>261.0395</td></tr>
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<tr><td colspan=3>tsnr</td><td>51.236691779922694</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |