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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8010_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8010/figures/sub-8010_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8010/ses-01/func/sub-8010_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>a12b829706d24acdeb3d5f0c3e9d5af3</td></tr>
</table>
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>18:11:1.055000</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.9985, 0.0543661, 0.00641502, -0.0546012, 0.997484, 0.0452209]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC3-7;NC1</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0452555</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1757, -9231, 4402, 858, -28, -297, 415, -38]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>220.458</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.394131660461426, -0.13091884553432465, 0.009456954896450043, 113.38870239257812], [-0.13035497069358826, 2.3916938304901123, 0.10920804738998413, -99.42579650878906], [0.015381471253931522, -0.10842736810445786, 2.3974955081939697, -69.23463439941406], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['181101.055000', '181102.255000', '181103.455000', '181104.655000', '181105.855000', '181107.055000', '181108.255000', '181109.455000', '181110.655000', '181111.855000', '181113.055000', '181114.255000', '181115.455000', '181116.655000', '181117.855000', '181119.055000', '181120.255000', '181121.455000', '181122.655000', '181123.855000', '181125.055000', '181126.255000', '181127.455000', 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'181253.176000', '181253.178000', '181253.181000', '181253.184000', '181253.186000', '181253.189000', '181253.191000', '181253.194000', '181253.196000', '181253.199000', '181253.202000', '181253.204000', '181253.207000', '181253.209000', '181253.212000', '181253.214000', '181253.217000', '181253.219000', '181253.230000', '181253.232000', '181253.235000', '181331.726000', '181331.729000', '181331.732000', '181331.734000', '181331.737000', '181331.739000', '181331.742000', '181331.745000', '181331.747000', '181331.750000', '181331.752000', '181331.755000', '181331.764000', '181331.766000', '181331.769000', '181331.771000', '181331.774000', '181331.777000', '181331.779000', '181331.782000', '181331.785000', '181331.787000', '181331.790000', '181331.793000', '181331.795000', '181331.798000', '181331.801000', '181331.803000', '181331.806000', '181331.808000', '181331.811000', '181331.814000', '181331.816000'], 'InstanceCreationTime': ['181133.150000', '181133.153000', '181133.156000', '181133.158000', '181133.161000', '181133.163000', '181133.166000', '181133.169000', '181133.171000', '181133.174000', '181133.176000', '181133.179000', '181133.181000', '181133.184000', '181133.193000', '181133.196000', '181133.198000', '181133.201000', '181133.203000', '181133.206000', '181133.209000', '181133.211000', '181133.223000', '181133.225000', '181133.228000', '181133.231000', '181213.145000', '181213.152000', '181213.155000', '181213.157000', '181213.160000', '181213.162000', '181213.165000', '181213.168000', '181213.170000', '181213.173000', '181213.175000', '181213.178000', '181213.180000', '181213.183000', '181213.185000', '181213.188000', '181213.191000', '181213.193000', '181213.196000', '181213.198000', '181213.206000', '181213.209000', '181213.211000', '181213.214000', '181213.216000', '181213.219000', '181213.222000', '181213.224000', '181213.227000', '181213.234000', '181213.237000', '181213.240000', '181213.242000', '181253.145000', '181253.147000', '181253.150000', '181253.153000', '181253.155000', '181253.158000', '181253.161000', '181253.163000', '181253.166000', '181253.168000', '181253.171000', '181253.173000', '181253.176000', '181253.178000', '181253.181000', '181253.184000', '181253.186000', '181253.189000', '181253.191000', '181253.194000', '181253.196000', '181253.199000', '181253.202000', '181253.204000', '181253.207000', '181253.209000', '181253.212000', '181253.214000', '181253.217000', '181253.219000', '181253.230000', '181253.232000', '181253.235000', '181331.726000', '181331.729000', '181331.732000', '181331.734000', '181331.737000', '181331.739000', '181331.742000', '181331.745000', '181331.747000', '181331.750000', '181331.752000', '181331.755000', '181331.764000', '181331.766000', '181331.769000', '181331.771000', '181331.774000', '181331.777000', '181331.779000', '181331.782000', '181331.785000', '181331.787000', '181331.790000', '181331.793000', '181331.795000', '181331.798000', '181331.801000', '181331.803000', '181331.806000', '181331.808000', '181331.811000', '181331.814000', '181331.816000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2021, 2039, 2021, 2055, 2040, 2054, 2105, 2075, 2120, 2042, 2066, 2060, 2037, 2077, 2036, 2062, 2028, 1996, 2035, 2017, 2034, 2026, 2017, 2029, 2015, 2046, 2020, 2010, 2061, 2034, 2047, 2038, 1997, 2035, 2019, 2046, 2050, 2028, 2062, 2050, 2025, 2051, 2026, 2028, 2047, 2020, 2050, 2038, 2036, 2029, 2016, 2047, 2020, 2002, 2046, 2015, 2063, 2054, 2030, 2063, 2027, 2069, 2045, 2006, 2045, 1992, 2011, 2041, 1993, 2065, 2012, 2050, 2038, 1995, 2024, 2010, 2035, 2015, 2005, 2040, 2037, 2018, 2047, 2018, 2003, 2032, 2005, 2007, 2041, 2015, 2065, 2050, 2025, 2054, 2035, 2033, 2045, 1994, 2033, 2037, 2042, 2072, 2020, 2069, 2026, 2051, 2050, 1988, 2043, 2037, 2048, 2051, 2026, 2065, 2038, 2031, 2038, 1976, 2012, 2040, 1999, 2027, 1989, 2004, 2038], 'WindowCenter': [576.0, 576.0, 574.0, 575.0, 575.0, 576.0, 576.0, 575.0, 575.0, 573.0, 573.0, 573.0, 573.0, 573.0, 572.0, 573.0, 573.0, 573.0, 573.0, 572.0, 573.0, 573.0, 573.0, 573.0, 573.0, 573.0, 573.0, 573.0, 574.0, 573.0, 574.0, 574.0, 573.0, 573.0, 574.0, 574.0, 575.0, 574.0, 575.0, 574.0, 573.0, 574.0, 572.0, 573.0, 573.0, 573.0, 574.0, 573.0, 573.0, 573.0, 572.0, 573.0, 573.0, 573.0, 574.0, 573.0, 574.0, 574.0, 574.0, 573.0, 572.0, 574.0, 573.0, 573.0, 574.0, 572.0, 573.0, 573.0, 573.0, 574.0, 573.0, 573.0, 573.0, 572.0, 573.0, 573.0, 573.0, 573.0, 572.0, 574.0, 574.0, 573.0, 574.0, 573.0, 574.0, 574.0, 573.0, 573.0, 574.0, 574.0, 575.0, 575.0, 574.0, 574.0, 574.0, 574.0, 574.0, 573.0, 574.0, 573.0, 574.0, 575.0, 574.0, 575.0, 574.0, 574.0, 574.0, 573.0, 573.0, 574.0, 575.0, 575.0, 575.0, 575.0, 574.0, 574.0, 574.0, 572.0, 573.0, 574.0, 573.0, 574.0, 573.0, 574.0, 574.0], 'WindowWidth': [1233.0, 1233.0, 1229.0, 1231.0, 1232.0, 1233.0, 1235.0, 1232.0, 1232.0, 1228.0, 1228.0, 1228.0, 1227.0, 1227.0, 1226.0, 1228.0, 1227.0, 1227.0, 1226.0, 1225.0, 1227.0, 1227.0, 1227.0, 1227.0, 1226.0, 1227.0, 1226.0, 1227.0, 1229.0, 1228.0, 1228.0, 1229.0, 1227.0, 1227.0, 1228.0, 1229.0, 1231.0, 1229.0, 1231.0, 1230.0, 1228.0, 1228.0, 1226.0, 1227.0, 1228.0, 1227.0, 1229.0, 1228.0, 1228.0, 1228.0, 1226.0, 1227.0, 1227.0, 1227.0, 1230.0, 1228.0, 1230.0, 1230.0, 1229.0, 1228.0, 1226.0, 1228.0, 1228.0, 1227.0, 1228.0, 1226.0, 1226.0, 1227.0, 1227.0, 1229.0, 1227.0, 1228.0, 1226.0, 1226.0, 1227.0, 1227.0, 1227.0, 1227.0, 1226.0, 1228.0, 1228.0, 1227.0, 1229.0, 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</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0027182758620689653</td></tr>
<tr><td colspan=3>aqi</td><td>0.004131250862068966</td></tr>
<tr><td colspan=3>dummy_trs</td><td>9</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>33.32862872260869</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.143666036260869</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0167349599130433</td></tr>
<tr><td colspan=3>efc</td><td>0.5002</td></tr>
<tr><td colspan=3>fber</td><td>746.119</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.16149367467097453</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>43</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>37.06896551724138</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3266203613977585</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.3051423995453026</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.3286396509425416</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.346079033705432</td></tr>
<tr><td colspan=3>gcor</td><td>0.00306662</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>0.007362106814980507</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.059573639184236526</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>116</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>1.9502848349017659</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>27.7991</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>9.9564</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>44.4879</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>19.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>363446.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>11.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>175.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>77.0679</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>1.375</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>207.494</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>543.4746</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>506.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>101194.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>135.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1022.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>259.448</td></tr>
<tr><td colspan=3>tsnr</td><td>50.9573931992054</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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Record specific artifacts
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</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>