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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-06_session-01_subject-8009_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg" target="_blank">sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-background_bold.svg" target="_blank">sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-background_bold.svg</a></small>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-carpet_bold.svg" style="width: 100%" />
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg" target="_blank">sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg" target="_blank">sub-8009/figures/sub-8009_ses-01_task-RDMmotion_run-06_desc-norm_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8009/ses-01/func/sub-8009_ses-01_task-RDMmotion_run-06_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>1f5f3d535bee72c1fa2b11bc689d44a6</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>10:04:31.372500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.993117, 0.0714519, 0.0928122, -0.0630036, 0.993859, -0.0909704]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-06</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0508552</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-06</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>17</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1762, -9072, 4373, 250, -125, -185, -82, -40]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>231.45</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.381222724914551, -0.15106554329395294, 0.23698143661022186, 106.57600402832031], [-0.1713222712278366, 2.3830018043518066, -0.20279209315776825, -85.0994873046875], [0.22253845632076263, 0.2181222140789032, 2.379646062850952, -83.88670349121094], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['100431.372500', '100432.572500', '100433.772500', '100434.972500', '100436.172500', '100437.372500', '100438.572500', '100439.772500', '100440.972500', '100442.172500', '100443.372500', '100444.572500', '100445.772500', '100446.972500', '100448.172500', '100449.372500', '100450.572500', '100451.772500', '100452.972500', '100454.172500', '100455.372500', '100456.572500', '100457.772500', 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'100608.572500', '100609.772500', '100610.972500', '100612.172500', '100613.372500', '100614.572500', '100615.772500', '100616.972500', '100618.172500', '100619.372500', '100620.572500', '100621.772500', '100622.972500', '100624.172500', '100625.372500', '100626.572500', '100627.772500', '100628.972500', '100630.172500', '100631.372500', '100632.572500', '100633.772500', '100634.972500', '100636.172500', '100637.372500', '100638.572500', '100639.772500', '100640.972500', '100642.172500', '100643.372500', '100644.572500', '100645.772500', '100646.972500', '100648.172500', '100649.372500', '100650.572500', '100651.772500', '100652.972500', '100654.172500', '100655.372500', '100656.572500', '100657.772500', '100658.972500', '100700.172500'], 'ContentTime': ['100509.203000', '100509.206000', '100509.209000', '100509.211000', '100509.214000', '100509.217000', '100509.219000', '100509.222000', '100509.224000', '100509.234000', '100509.237000', '100509.239000', '100509.242000', '100509.245000', '100509.247000', '100509.250000', '100509.252000', '100509.255000', '100509.263000', '100509.266000', '100509.268000', '100509.271000', '100509.274000', '100509.276000', '100509.279000', '100509.281000', '100509.284000', '100509.287000', '100509.289000', '100509.292000', '100509.294000', '100549.199000', '100549.202000', '100549.204000', '100549.207000', '100549.210000', '100549.219000', '100549.222000', '100549.225000', '100549.227000', '100549.230000', '100549.233000', '100549.236000', '100549.238000', '100549.241000', '100549.243000', '100549.246000', '100549.248000', '100549.251000', '100549.254000', '100549.257000', '100549.259000', '100549.262000', '100549.264000', '100549.267000', '100549.270000', '100549.273000', '100549.275000', '100549.278000', '100549.281000', '100549.283000', '100549.286000', '100549.288000', '100549.291000', '100629.198000', '100629.201000', '100629.203000', '100629.206000', '100629.208000', '100629.211000', '100629.214000', '100629.216000', '100629.219000', '100629.222000', '100629.224000', '100629.227000', '100629.229000', '100629.232000', '100629.235000', '100629.241000', '100629.244000', '100629.247000', '100629.249000', '100629.252000', '100629.254000', '100629.257000', '100629.259000', '100629.262000', '100629.265000', '100629.267000', '100629.270000', '100629.272000', '100629.275000', '100629.278000', '100629.280000', '100629.283000', '100629.285000', '100701.829000', '100701.832000', '100701.835000', '100701.838000', '100701.840000', '100701.843000', '100701.845000', '100701.848000', '100701.851000', '100701.853000', '100701.856000', '100701.858000', '100701.861000', '100701.864000', '100701.866000', '100701.869000', '100701.871000', '100701.874000', '100701.876000', '100701.879000', '100701.882000', '100701.890000', '100701.892000', '100701.895000', '100701.898000', '100701.900000', '100701.903000', '100701.905000'], 'InstanceCreationTime': ['100509.203000', '100509.206000', '100509.209000', '100509.211000', '100509.214000', '100509.217000', '100509.219000', '100509.222000', '100509.224000', '100509.234000', '100509.237000', '100509.239000', '100509.242000', '100509.245000', '100509.247000', '100509.250000', '100509.252000', '100509.255000', '100509.263000', '100509.266000', '100509.268000', '100509.271000', '100509.274000', '100509.276000', '100509.279000', '100509.281000', '100509.284000', '100509.287000', '100509.289000', '100509.292000', '100509.294000', '100549.199000', '100549.202000', '100549.204000', '100549.207000', '100549.210000', '100549.219000', '100549.222000', '100549.225000', '100549.227000', '100549.230000', '100549.233000', '100549.236000', '100549.238000', '100549.241000', '100549.243000', '100549.246000', '100549.248000', '100549.251000', '100549.254000', '100549.257000', '100549.259000', '100549.262000', '100549.264000', '100549.267000', '100549.270000', '100549.273000', '100549.275000', '100549.278000', '100549.281000', '100549.283000', '100549.286000', '100549.288000', '100549.291000', '100629.198000', '100629.201000', '100629.203000', '100629.206000', '100629.208000', '100629.211000', '100629.214000', '100629.216000', '100629.219000', '100629.222000', '100629.224000', '100629.227000', '100629.229000', '100629.232000', '100629.235000', '100629.241000', '100629.244000', '100629.247000', '100629.249000', '100629.252000', '100629.254000', '100629.257000', '100629.259000', '100629.262000', '100629.265000', '100629.267000', '100629.270000', '100629.272000', '100629.275000', '100629.278000', '100629.280000', '100629.283000', '100629.285000', '100701.829000', '100701.832000', '100701.835000', '100701.838000', '100701.840000', '100701.843000', '100701.845000', '100701.848000', '100701.851000', '100701.853000', '100701.856000', '100701.858000', '100701.861000', '100701.864000', '100701.866000', '100701.869000', '100701.871000', '100701.874000', '100701.876000', '100701.879000', '100701.882000', '100701.890000', '100701.892000', '100701.895000', '100701.898000', '100701.900000', '100701.903000', '100701.905000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2801, 2720, 2652, 2639, 2574, 2557, 2582, 2582, 2574, 2592, 2566, 2591, 2597, 2564, 2615, 2596, 2566, 2585, 2535, 2603, 2586, 2564, 2553, 2562, 2583, 2548, 2577, 2569, 2586, 2605, 2536, 2649, 2574, 2599, 2595, 2555, 2595, 2577, 2582, 2612, 2595, 2593, 2552, 2583, 2621, 2592, 2565, 2613, 2612, 2565, 2594, 2590, 2597, 2578, 2621, 2600, 2624, 2635, 2609, 2602, 2595, 2603, 2652, 2566, 2612, 2599, 2613, 2594, 2630, 2597, 2600, 2579, 2643, 2626, 2597, 2621, 2610, 2587, 2636, 2528, 2612, 2567, 2602, 2604, 2621, 2594, 2642, 2597, 2647, 2590, 2598, 2590, 2601, 2599, 2630, 2611, 2591, 2631, 2607, 2580, 2631, 2551, 2658, 2620, 2618, 2649, 2592, 2659, 2632, 2615, 2657, 2619, 2645, 2653, 2626, 2639, 2620, 2594, 2648, 2618, 2620, 2648, 2585, 2661, 2632], 'WindowCenter': [645.0, 643.0, 641.0, 639.0, 639.0, 639.0, 639.0, 640.0, 639.0, 639.0, 638.0, 639.0, 639.0, 638.0, 639.0, 638.0, 638.0, 638.0, 637.0, 638.0, 638.0, 637.0, 637.0, 638.0, 639.0, 638.0, 638.0, 637.0, 638.0, 638.0, 637.0, 638.0, 638.0, 639.0, 639.0, 637.0, 637.0, 638.0, 639.0, 640.0, 639.0, 638.0, 637.0, 638.0, 638.0, 639.0, 639.0, 639.0, 638.0, 637.0, 638.0, 639.0, 640.0, 639.0, 639.0, 638.0, 638.0, 638.0, 637.0, 637.0, 637.0, 637.0, 637.0, 636.0, 637.0, 637.0, 638.0, 638.0, 638.0, 638.0, 638.0, 637.0, 638.0, 637.0, 638.0, 639.0, 639.0, 639.0, 639.0, 638.0, 639.0, 638.0, 639.0, 639.0, 639.0, 639.0, 639.0, 639.0, 639.0, 639.0, 639.0, 638.0, 639.0, 640.0, 641.0, 641.0, 640.0, 640.0, 639.0, 639.0, 638.0, 637.0, 638.0, 638.0, 638.0, 638.0, 638.0, 639.0, 638.0, 637.0, 638.0, 638.0, 638.0, 638.0, 637.0, 638.0, 638.0, 638.0, 638.0, 638.0, 638.0, 638.0, 637.0, 638.0, 637.0], 'WindowWidth': [1378.0, 1373.0, 1369.0, 1366.0, 1364.0, 1365.0, 1366.0, 1367.0, 1366.0, 1364.0, 1363.0, 1363.0, 1364.0, 1364.0, 1365.0, 1363.0, 1363.0, 1362.0, 1360.0, 1363.0, 1363.0, 1361.0, 1361.0, 1362.0, 1364.0, 1364.0, 1363.0, 1361.0, 1362.0, 1362.0, 1361.0, 1362.0, 1363.0, 1364.0, 1365.0, 1360.0, 1360.0, 1363.0, 1365.0, 1366.0, 1365.0, 1362.0, 1361.0, 1361.0, 1363.0, 1365.0, 1365.0, 1364.0, 1361.0, 1360.0, 1362.0, 1365.0, 1366.0, 1365.0, 1364.0, 1363.0, 1362.0, 1362.0, 1360.0, 1359.0, 1359.0, 1359.0, 1360.0, 1359.0, 1360.0, 1361.0, 1362.0, 1362.0, 1362.0, 1362.0, 1361.0, 1361.0, 1362.0, 1361.0, 1362.0, 1364.0, 1365.0, 1365.0, 1364.0, 1362.0, 1364.0, 1363.0, 1364.0, 1364.0, 1364.0, 1364.0, 1365.0, 1365.0, 1365.0, 1365.0, 1363.0, 1362.0, 1365.0, 1368.0, 1369.0, 1368.0, 1367.0, 1365.0, 1364.0, 1364.0, 1363.0, 1360.0, 1362.0, 1362.0, 1362.0, 1363.0, 1363.0, 1364.0, 1362.0, 1360.0, 1362.0, 1362.0, 1362.0, 1362.0, 1361.0, 1361.0, 1363.0, 1361.0, 1362.0, 1361.0, 1362.0, 1363.0, 1361.0, 1361.0, 1360.0]}, 'slices': {}}</td></tr>
</table>
</div>
</div>
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<h2 class="accordion-header" id="about-metadata-2">
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Extracted Image quality metrics (IQMs)
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</h2>
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<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0011035772357723577</td></tr>
<tr><td colspan=3>aqi</td><td>0.0029887181300813008</td></tr>
<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>32.144898180081974</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.152773027459016</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0180372428688529</td></tr>
<tr><td colspan=3>efc</td><td>0.5677</td></tr>
<tr><td colspan=3>fber</td><td>330.5749</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.10988803597978077</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>4</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>3.252032520325203</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.509173104158533</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.3894764287436643</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.561001359204128</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.577041524527807</td></tr>
<tr><td colspan=3>gcor</td><td>0.00646099</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>0.013126220554113388</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.08144082874059677</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>123</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>1.942984248484577</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>26.6913</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>18.7917</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>84.4463</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>30.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>349236.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>15.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>376.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>146.1104</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>0.9519</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>250.2645</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>586.6381</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>543.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>115404.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>189.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1109.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>279.4658</td></tr>
<tr><td colspan=3>tsnr</td><td>55.446824475657195</td></tr>
</table>
</div>
</div>
</div>
</div>
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Record specific artifacts
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
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<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>