614 lines
No EOL
50 KiB
HTML
614 lines
No EOL
50 KiB
HTML
<?xml version="1.0" encoding="utf-8" ?>
|
|
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
|
<head>
|
|
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
|
<meta name="generator" content="NiReports: https://www.nipreps.org/" />
|
|
<title>sub-8008_ses-01_task-RDMlocalizer_run-02_bold :: MRIQC's BOLD fMRI report</title>
|
|
<script src="https://code.jquery.com/jquery-3.6.0.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script>
|
|
<link href="https://cdn.jsdelivr.net/npm/bootstrap@5.2.3/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-rbsA2VBKQhggwzxH7pPCaAqO46MgnOM80zW1RWuH61DGLwZJEdK2Kadq2F9CUG65" crossorigin="anonymous">
|
|
<script src="https://cdn.jsdelivr.net/npm/bootstrap@5.2.3/dist/js/bootstrap.bundle.min.js" integrity="sha384-kenU1KFdBIe4zVF0s0G1M5b4hcpxyD9F7jL+jjXkk+Q2h455rYXK/7HAuoJl+0I4" crossorigin="anonymous"></script>
|
|
|
|
<script>
|
|
var timestamp = Date.now()
|
|
|
|
function read_form() {
|
|
var ds = "<unset>";
|
|
var sub = "sub-8008_ses-01_task-RDMlocalizer_run-02_bold.nii.gz";
|
|
|
|
var artifacts = [];
|
|
$('#qcartifacts-group input:checked').each(function() {
|
|
artifacts.push($(this).attr('name'));
|
|
});
|
|
|
|
var rating = $('#qcslider').val();
|
|
var payload = {
|
|
'dataset': ds,
|
|
'subject': sub,
|
|
'rating': rating,
|
|
'artifacts': artifacts,
|
|
'time_sec': (Date.now() - timestamp) / 1000,
|
|
'confidence': $('#qcextra-confidence').val(),
|
|
'comments': $('#qcextra-comments').val()
|
|
};
|
|
|
|
var file = new Blob([JSON.stringify(payload)], {type: 'text/json'});
|
|
$('#btn-download').attr('href', URL.createObjectURL(file));
|
|
$('#btn-download').attr('download', payload['dataset'] + "_" + payload['subject'] + ".json");
|
|
return payload
|
|
};
|
|
|
|
function toggle_rating() {
|
|
if ($('#qcrating-menu').hasClass('d-none')) {
|
|
$('#qcrating-menu').removeClass('d-none');
|
|
$('#qcrating-toggler').prop('checked', true);
|
|
} else {
|
|
$('#qcrating-menu').addClass('d-none');
|
|
$('#qcrating-toggler').prop('checked', false);
|
|
}
|
|
};
|
|
|
|
$(window).on('load',function(){
|
|
var authorization = $('#btn-post').val()
|
|
if (authorization.includes("secret_token")) {
|
|
$('#btn-post').addClass('d-none');
|
|
};
|
|
timestamp = Date.now();
|
|
});
|
|
|
|
</script>
|
|
<style type="text/css">
|
|
/* The slider itself */
|
|
.slider {
|
|
-webkit-appearance: none; /* Override default CSS styles */
|
|
appearance: none;
|
|
margin-bottom: 8px;
|
|
margin-left: 10%;
|
|
width: 80%;
|
|
height: 5px; /* Specified height */
|
|
background: #d3d3d3; /* Grey background */
|
|
outline: none; /* Remove outline */
|
|
opacity: 0.7; /* Set transparency (for mouse-over effects on hover) */
|
|
-webkit-transition: .2s; /* 0.2 seconds transition on hover */
|
|
transition: opacity .2s;
|
|
}
|
|
|
|
/* Mouse-over effects */
|
|
.slider:hover {
|
|
opacity: 1; /* Fully shown on mouse-over */
|
|
}
|
|
|
|
.slider::-webkit-slider-thumb {
|
|
-webkit-appearance: none;
|
|
appearance: none;
|
|
width: 25px;
|
|
height: 25px;
|
|
border: 0;
|
|
background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
|
|
cursor: pointer;
|
|
z-index: 2000 !important;
|
|
}
|
|
|
|
.slider::-moz-range-thumb {
|
|
width: 25px;
|
|
height: 25px;
|
|
border: 0;
|
|
background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
|
|
cursor: pointer;
|
|
z-index: 2000 !important;
|
|
}
|
|
|
|
</style>
|
|
</head>
|
|
<body style="font-family: helvetica;">
|
|
<nav class="navbar fixed-top navbar-expand-lg bg-light">
|
|
<div class="container-fluid">
|
|
<div class="collapse navbar-collapse" id="navbarSupportedContent">
|
|
<ul class="navbar-nav me-auto mb-2 mb-lg-0">
|
|
<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
|
|
<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
|
|
<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
|
|
<li class="nav-item dropdown">
|
|
<a class="nav-link dropdown-toggle" id="navbarAbout" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#About">
|
|
About
|
|
</a>
|
|
<ul class="dropdown-menu">
|
|
<li><a class="dropdown-item" href="#errors">Errors</a></li>
|
|
<li><a class="dropdown-item" href="#meta-about-metadata">Reproducibility and provenance information</a></li>
|
|
</ul>
|
|
</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
<div class="d-flex flex-row-reverse">
|
|
<div class="form-check form-switch align-self-center flex-fill me-4">
|
|
<input class="form-check-input" type="checkbox" id="qcrating-toggler"></input>
|
|
<label class="form-check-label" style="width: 100pt;" for="qcrating-toggler">Rating widget</label>
|
|
</div>
|
|
</div>
|
|
</nav>
|
|
<noscript>
|
|
<h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
|
|
</noscript>
|
|
|
|
<div id="Basic echo-wise reports" class="mt-5">
|
|
<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
|
|
<div id="datatype-figures_desc-stdev_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
|
|
<img class="svg-reportlet" src="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-stdev_bold.svg" style="width: 100%" />
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-stdev_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-stdev_bold.svg</a></small>
|
|
|
|
</div>
|
|
<div id="datatype-figures_desc-background_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
|
|
<img class="svg-reportlet" src="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-background_bold.svg" style="width: 100%" />
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-background_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-background_bold.svg</a></small>
|
|
|
|
</div>
|
|
<div id="datatype-figures_desc-zoomed_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
|
|
<img class="svg-reportlet" src="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-zoomed_bold.svg" style="width: 100%" />
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-zoomed_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-zoomed_bold.svg</a></small>
|
|
|
|
</div>
|
|
<div id="datatype-figures_desc-carpet_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
|
|
<img class="svg-reportlet" src="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-carpet_bold.svg" style="width: 100%" />
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-carpet_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-carpet_bold.svg</a></small>
|
|
|
|
</div>
|
|
</div>
|
|
<div id="Extended echo-wise reports" class="mt-5">
|
|
<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
|
|
<div id="datatype-figures_desc-mean_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
|
|
<img class="svg-reportlet" src="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-mean_bold.svg" style="width: 100%" />
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-mean_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-mean_bold.svg</a></small>
|
|
|
|
</div>
|
|
</div>
|
|
<div id="Extended reports shared across echos" class="mt-5">
|
|
<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
|
|
<div id="datatype-figures_desc-brainmask_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
|
|
<img class="svg-reportlet" src="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-brainmask_bold.svg" style="width: 100%" />
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-brainmask_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-brainmask_bold.svg</a></small>
|
|
|
|
</div>
|
|
<div id="datatype-figures_desc-norm_run-02_session-01_subject-8008_suffix-bold_task-RDMlocalizer" class="ps-4 pe-4 mb-2">
|
|
<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
|
|
<object class="svg-reportlet" type="image/svg+xml" data="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg" style="">
|
|
Problem loading figure sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
|
|
</div>
|
|
<small>Get figure file: <a href="./sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg" target="_blank">sub-8008/figures/sub-8008_ses-01_task-RDMlocalizer_run-02_desc-norm_bold.svg</a></small>
|
|
|
|
</div>
|
|
</div>
|
|
<div id="About" class="mt-5">
|
|
<h1 class="sub-report-title pt-5 ps-4">About</h1>
|
|
<div id="errors" class="ps-4 pe-4 mb-2">
|
|
<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
|
|
</div>
|
|
<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
|
|
<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
|
|
reconstructing the provenance of the corresponding derivatives.
|
|
</p> <div class="accordion accordion-flush" id="about-metadata">
|
|
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="about-metadata-0">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
|
|
Provenance Information
|
|
</button>
|
|
</h2>
|
|
<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
|
|
<div class="accordion-body metadata-table">
|
|
<table id="about-metadata-table-0" class="table table-sm table-striped">
|
|
<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
|
|
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8008/ses-01/func/sub-8008_ses-01_task-RDMlocalizer_run-02_bold.nii.gz</td></tr>
|
|
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
|
|
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
|
|
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
|
|
<tr><td colspan=2>md5sum</td><td>b5aec8080d35172c6fbf2b86e3c21b3c</td></tr>
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="about-metadata-1">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
|
|
Dataset Information
|
|
</button>
|
|
</h2>
|
|
<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
|
|
<div class="accordion-body metadata-table">
|
|
<table id="about-metadata-table-1" class="table table-sm table-striped">
|
|
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
|
|
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
|
|
<tr><td colspan=2>AcquisitionTime</td><td>18:27:9.865000</td></tr>
|
|
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
|
|
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
|
|
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
|
|
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
|
|
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
|
|
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
|
|
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
|
|
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
|
|
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
|
|
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
|
|
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
|
|
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
|
|
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
|
|
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.99735, 0.0725488, -0.00548851, -0.0727158, 0.996469, -0.041984]</td></tr>
|
|
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
|
|
<tr><td colspan=2>ImagingFrequency</td><td>123.25</td></tr>
|
|
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
|
|
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
|
|
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
|
|
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
|
|
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
|
|
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
|
|
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
|
|
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
|
|
<tr><td colspan=2>Modality</td><td>MR</td></tr>
|
|
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
|
|
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
|
|
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
|
|
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
|
|
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
|
|
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
|
|
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
|
|
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
|
|
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
|
|
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMlocalizer_run-02</td></tr>
|
|
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
|
|
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
|
|
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
|
|
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
|
|
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
|
|
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
|
|
<tr><td colspan=2>SAR</td><td>0.0598159</td></tr>
|
|
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
|
|
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
|
|
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
|
|
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
|
|
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMlocalizer_run-02</td></tr>
|
|
<tr><td colspan=2>SeriesNumber</td><td>20</td></tr>
|
|
<tr><td colspan=2>ShimSetting</td><td>[1752, -9088, 4419, 342, -17, -59, -45, 0]</td></tr>
|
|
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.9425, 0.3925, 1.0225, 0.4725, 1.1]</td></tr>
|
|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMlocalizer</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>234.758</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3913726806640625, -0.17435261607170105, -0.005815757438540459, 115.19979095458984], [-0.17395231127738953, 2.3892600536346436, -0.10145245492458344, -85.26564025878906], [-0.013159940019249916, 0.10066623985767365, 2.3978476524353027, -58.80396270751953], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 195]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195], 'AcquisitionTime': ['182709.865000', '182711.065000', '182712.265000', '182713.465000', '182714.665000', '182715.865000', '182717.065000', '182718.265000', '182719.465000', '182720.665000', '182721.865000', '182723.065000', '182724.265000', '182725.465000', '182726.665000', '182727.865000', '182729.065000', '182730.265000', '182731.465000', '182732.665000', '182733.865000', '182735.065000', '182736.265000', '182737.465000', '182738.665000', '182739.865000', '182741.065000', '182742.265000', '182743.465000', '182744.665000', '182745.865000', '182747.065000', '182748.265000', '182749.465000', '182750.665000', '182751.865000', '182753.065000', '182754.265000', '182755.465000', '182756.665000', '182757.865000', '182759.065000', '182800.265000', '182801.465000', '182802.665000', '182803.865000', '182805.065000', '182806.265000', '182807.465000', '182808.665000', '182809.865000', '182811.065000', '182812.265000', '182813.465000', '182814.665000', '182815.865000', '182817.065000', '182818.265000', '182819.465000', '182820.665000', '182821.865000', '182823.065000', '182824.265000', '182825.465000', '182826.665000', '182827.865000', '182829.065000', '182830.265000', '182831.465000', '182832.665000', '182833.865000', '182835.065000', '182836.265000', '182837.465000', '182838.665000', '182839.865000', '182841.065000', '182842.265000', '182843.465000', '182844.665000', '182845.865000', '182847.065000', '182848.265000', '182849.465000', '182850.665000', '182851.865000', '182853.065000', '182854.265000', '182855.465000', '182856.665000', '182857.865000', '182859.065000', '182900.265000', '182901.465000', '182902.665000', '182903.865000', '182905.065000', '182906.265000', '182907.465000', '182908.665000', '182909.865000', '182911.065000', '182912.265000', '182913.465000', '182914.665000', '182915.865000', '182917.065000', '182918.265000', '182919.465000', '182920.665000', '182921.865000', '182923.065000', '182924.265000', '182925.465000', '182926.665000', '182927.865000', '182929.065000', '182930.265000', '182931.465000', '182932.665000', '182933.865000', '182935.065000', '182936.265000', '182937.465000', '182938.665000', '182939.865000', '182941.065000', '182942.265000', '182943.465000', '182944.665000', '182945.865000', '182947.065000', '182948.265000', '182949.465000', '182950.665000', '182951.865000', '182953.065000', '182954.265000', '182955.465000', '182956.665000', '182957.865000', '182959.065000', '183000.265000', '183001.465000', '183002.665000', '183003.865000', '183005.065000', '183006.265000', '183007.465000', '183008.665000', '183009.865000', '183011.065000', '183012.265000', '183013.465000', '183014.665000', '183015.865000', '183017.065000', '183018.265000', '183019.465000', '183020.665000', '183021.865000', '183023.065000', '183024.265000', '183025.465000', '183026.665000', '183027.865000', '183029.065000', '183030.265000', '183031.465000', '183032.665000', '183033.865000', '183035.065000', '183036.265000', '183037.465000', '183038.665000', '183039.865000', '183041.065000', '183042.265000', '183043.465000', '183044.665000', '183045.865000', '183047.065000', '183048.265000', '183049.465000', '183050.665000', '183051.865000', '183053.065000', '183054.265000', '183055.465000', '183056.665000', '183057.865000', '183059.065000', '183100.265000', '183101.465000', '183102.665000'], 'ContentTime': ['182723.229000', '182723.232000', '182723.235000', '182723.238000', '182723.240000', '182723.267000', '182723.270000', '182723.279000', '182723.281000', '182723.284000', '182803.225000', '182803.228000', '182803.231000', '182803.234000', '182803.236000', '182803.239000', '182803.241000', '182803.244000', '182803.247000', '182803.249000', '182803.252000', '182803.254000', '182803.257000', '182803.259000', '182803.262000', '182803.265000', '182803.268000', '182803.270000', '182803.273000', '182803.276000', '182803.278000', '182803.281000', '182803.283000', '182803.286000', '182803.288000', '182803.291000', '182803.300000', '182803.303000', '182803.305000', '182803.308000', '182803.310000', '182803.313000', '182803.316000', '182803.318000', '182843.225000', '182843.227000', '182843.230000', '182843.232000', '182843.237000', '182843.239000', '182843.242000', '182843.244000', '182843.247000', '182843.250000', '182843.252000', '182843.255000', '182843.257000', '182843.260000', '182843.262000', '182843.265000', '182843.268000', '182843.270000', '182843.273000', '182843.275000', '182843.278000', '182843.281000', '182843.283000', '182843.286000', '182843.288000', '182843.291000', '182843.294000', '182843.296000', '182843.299000', '182843.301000', '182843.304000', '182843.307000', '182843.309000', '182923.224000', '182923.227000', '182923.230000', '182923.232000', '182923.235000', '182923.238000', '182923.240000', '182923.243000', '182923.246000', '182923.248000', '182923.251000', '182923.253000', '182923.256000', '182923.259000', '182923.261000', '182923.264000', '182923.267000', '182923.269000', '182923.272000', '182923.274000', '182923.277000', '182923.279000', '182923.282000', '182923.284000', '182923.287000', '182923.296000', '182923.299000', '182923.301000', '182923.304000', '182923.307000', '182923.309000', '182923.312000', '182923.314000', '183003.224000', '183003.227000', '183003.230000', '183003.232000', '183003.235000', '183003.238000', '183003.240000', '183003.243000', '183003.246000', '183003.248000', '183003.251000', '183003.253000', '183003.256000', '183003.259000', '183003.261000', '183003.264000', '183003.266000', '183003.269000', '183003.272000', '183003.274000', '183003.277000', '183003.298000', '183003.301000', '183003.304000', '183003.306000', '183003.309000', '183003.311000', '183003.314000', '183003.317000', '183003.319000', '183003.322000', '183003.325000', '183003.327000', '183003.330000', '183043.225000', '183043.228000', '183043.231000', '183043.233000', '183043.236000', '183043.239000', '183043.241000', '183043.244000', '183043.247000', '183043.249000', '183043.252000', '183043.255000', '183043.257000', '183043.260000', '183043.262000', '183043.265000', '183043.268000', '183043.270000', '183043.273000', '183043.275000', '183043.278000', '183043.281000', '183043.283000', '183043.286000', '183043.288000', '183043.291000', '183043.294000', '183043.297000', '183043.299000', '183043.302000', '183043.304000', '183043.307000', '183043.309000', '183104.403000', '183104.407000', '183104.410000', '183104.414000', '183104.418000', '183104.425000', '183104.429000', '183104.431000', '183104.435000', '183104.438000', '183104.443000', '183104.446000', '183104.449000', '183104.452000', '183104.456000', '183104.459000', '183104.463000', '183104.466000'], 'InstanceCreationTime': ['182723.229000', '182723.232000', '182723.235000', '182723.238000', '182723.240000', '182723.267000', '182723.270000', '182723.279000', '182723.281000', '182723.284000', '182803.225000', '182803.228000', '182803.231000', '182803.234000', '182803.236000', '182803.239000', '182803.241000', '182803.244000', '182803.247000', '182803.249000', '182803.252000', '182803.254000', '182803.257000', '182803.259000', '182803.262000', '182803.265000', '182803.268000', '182803.270000', '182803.273000', '182803.276000', '182803.278000', '182803.281000', '182803.283000', '182803.286000', '182803.288000', '182803.291000', '182803.300000', '182803.303000', '182803.305000', '182803.308000', '182803.310000', '182803.313000', '182803.316000', '182803.318000', '182843.225000', '182843.227000', '182843.230000', '182843.232000', '182843.237000', '182843.239000', '182843.242000', '182843.244000', '182843.247000', '182843.250000', '182843.252000', '182843.255000', '182843.257000', '182843.260000', '182843.262000', '182843.265000', '182843.268000', '182843.270000', '182843.273000', '182843.275000', '182843.278000', '182843.281000', '182843.283000', '182843.286000', '182843.288000', '182843.291000', '182843.294000', '182843.296000', '182843.299000', '182843.301000', '182843.304000', '182843.307000', '182843.309000', '182923.224000', '182923.227000', '182923.230000', '182923.232000', '182923.235000', '182923.238000', '182923.240000', '182923.243000', '182923.246000', '182923.248000', '182923.251000', '182923.253000', '182923.256000', '182923.259000', '182923.261000', '182923.264000', '182923.267000', '182923.269000', '182923.272000', '182923.274000', '182923.277000', '182923.279000', '182923.282000', '182923.284000', '182923.287000', '182923.296000', '182923.299000', '182923.301000', '182923.304000', '182923.307000', '182923.309000', '182923.312000', '182923.314000', '183003.224000', '183003.227000', '183003.230000', '183003.232000', '183003.235000', '183003.238000', '183003.240000', '183003.243000', '183003.246000', '183003.248000', '183003.251000', '183003.253000', '183003.256000', '183003.259000', '183003.261000', '183003.264000', '183003.266000', '183003.269000', '183003.272000', '183003.274000', '183003.277000', '183003.298000', '183003.301000', '183003.304000', '183003.306000', '183003.309000', '183003.311000', '183003.314000', '183003.317000', '183003.319000', '183003.322000', '183003.325000', '183003.327000', '183003.330000', '183043.225000', '183043.228000', '183043.231000', '183043.233000', '183043.236000', '183043.239000', '183043.241000', '183043.244000', '183043.247000', '183043.249000', '183043.252000', '183043.255000', '183043.257000', '183043.260000', '183043.262000', '183043.265000', '183043.268000', '183043.270000', '183043.273000', '183043.275000', '183043.278000', '183043.281000', '183043.283000', '183043.286000', '183043.288000', '183043.291000', '183043.294000', '183043.297000', '183043.299000', '183043.302000', '183043.304000', '183043.307000', '183043.309000', '183104.403000', '183104.407000', '183104.410000', '183104.414000', '183104.418000', '183104.425000', '183104.429000', '183104.431000', '183104.435000', '183104.438000', '183104.443000', '183104.446000', '183104.449000', '183104.452000', '183104.456000', '183104.459000', '183104.463000', '183104.466000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195], 'LargestImagePixelValue': [1998, 1930, 1924, 1917, 1885, 1887, 1888, 1884, 1899, 1901, 1891, 1887, 1878, 1888, 1905, 1872, 1892, 1892, 1880, 1888, 1886, 1873, 1892, 1872, 1891, 1891, 1900, 1905, 1881, 1900, 1881, 1886, 1902, 1877, 1880, 1894, 1902, 1898, 1896, 1905, 1897, 1890, 1903, 1890, 1874, 1911, 1892, 1889, 1910, 1906, 1903, 1895, 1903, 1915, 1916, 1897, 1934, 1908, 1888, 1913, 1891, 1913, 1906, 1905, 1933, 1917, 1904, 1923, 1919, 1907, 1917, 1895, 1929, 1936, 1916, 1937, 1937, 1929, 1936, 1911, 1923, 1929, 1924, 1934, 1917, 1919, 1943, 1927, 1918, 1923, 1903, 1932, 1921, 1921, 1922, 1940, 1926, 1931, 1926, 1941, 1929, 1929, 1928, 1929, 1908, 1918, 1905, 1927, 1937, 1914, 1944, 1932, 1931, 1951, 1932, 1947, 1939, 1941, 1931, 1932, 1927, 1932, 1920, 1920, 1924, 1925, 1915, 1935, 1918, 1929, 1928, 1929, 1937, 1934, 1938, 1948, 1933, 1938, 1929, 1925, 1927, 1937, 1914, 1930, 1915, 1931, 1929, 1943, 1944, 1939, 1934, 1930, 1935, 1941, 1937, 1943, 1937, 1933, 1938, 1939, 1928, 1929, 1932, 1931, 1937, 1916, 1926, 1938, 1926, 1934, 1920, 1934, 1922, 1933, 1955, 1926, 1935, 1938, 1924, 1946, 1925, 1939, 1936, 1926, 1921, 1934, 1925, 1930, 1932, 1928, 1925, 1909, 1921, 1924, 1927], 'WindowCenter': [593.0, 591.0, 589.0, 588.0, 587.0, 587.0, 587.0, 588.0, 589.0, 589.0, 589.0, 588.0, 588.0, 587.0, 587.0, 587.0, 588.0, 588.0, 588.0, 587.0, 587.0, 586.0, 587.0, 587.0, 588.0, 589.0, 589.0, 588.0, 587.0, 586.0, 586.0, 586.0, 587.0, 588.0, 588.0, 588.0, 588.0, 587.0, 587.0, 587.0, 587.0, 588.0, 588.0, 588.0, 588.0, 587.0, 587.0, 587.0, 588.0, 588.0, 588.0, 589.0, 588.0, 588.0, 588.0, 588.0, 589.0, 589.0, 590.0, 591.0, 590.0, 589.0, 587.0, 586.0, 586.0, 586.0, 587.0, 587.0, 587.0, 587.0, 587.0, 586.0, 586.0, 585.0, 585.0, 585.0, 585.0, 587.0, 586.0, 586.0, 585.0, 585.0, 585.0, 585.0, 586.0, 586.0, 587.0, 588.0, 590.0, 591.0, 590.0, 589.0, 586.0, 585.0, 584.0, 585.0, 586.0, 587.0, 587.0, 587.0, 587.0, 588.0, 587.0, 587.0, 586.0, 585.0, 584.0, 584.0, 585.0, 584.0, 585.0, 585.0, 585.0, 585.0, 585.0, 586.0, 587.0, 588.0, 589.0, 590.0, 589.0, 589.0, 589.0, 589.0, 588.0, 587.0, 586.0, 586.0, 585.0, 584.0, 585.0, 584.0, 584.0, 585.0, 585.0, 586.0, 587.0, 588.0, 589.0, 589.0, 590.0, 590.0, 588.0, 586.0, 585.0, 585.0, 585.0, 587.0, 588.0, 588.0, 587.0, 586.0, 585.0, 586.0, 587.0, 587.0, 588.0, 589.0, 589.0, 588.0, 586.0, 585.0, 586.0, 587.0, 588.0, 589.0, 590.0, 591.0, 590.0, 589.0, 587.0, 586.0, 584.0, 584.0, 585.0, 584.0, 585.0, 584.0, 584.0, 585.0, 584.0, 585.0, 586.0, 587.0, 589.0, 589.0, 589.0, 589.0, 588.0, 587.0, 589.0, 589.0, 590.0, 590.0, 588.0], 'WindowWidth': [1261.0, 1256.0, 1252.0, 1249.0, 1247.0, 1246.0, 1246.0, 1248.0, 1251.0, 1252.0, 1252.0, 1250.0, 1249.0, 1247.0, 1246.0, 1246.0, 1249.0, 1249.0, 1249.0, 1248.0, 1246.0, 1246.0, 1247.0, 1248.0, 1249.0, 1251.0, 1250.0, 1248.0, 1246.0, 1245.0, 1245.0, 1246.0, 1248.0, 1249.0, 1249.0, 1249.0, 1249.0, 1248.0, 1247.0, 1247.0, 1247.0, 1249.0, 1250.0, 1250.0, 1248.0, 1247.0, 1246.0, 1246.0, 1248.0, 1249.0, 1250.0, 1250.0, 1250.0, 1249.0, 1249.0, 1250.0, 1250.0, 1252.0, 1253.0, 1255.0, 1254.0, 1251.0, 1248.0, 1245.0, 1245.0, 1245.0, 1246.0, 1246.0, 1247.0, 1246.0, 1246.0, 1244.0, 1243.0, 1242.0, 1242.0, 1242.0, 1243.0, 1246.0, 1245.0, 1245.0, 1243.0, 1242.0, 1243.0, 1243.0, 1244.0, 1245.0, 1247.0, 1250.0, 1253.0, 1256.0, 1254.0, 1250.0, 1245.0, 1241.0, 1239.0, 1241.0, 1243.0, 1245.0, 1246.0, 1246.0, 1246.0, 1248.0, 1247.0, 1247.0, 1244.0, 1242.0, 1240.0, 1240.0, 1240.0, 1240.0, 1242.0, 1242.0, 1241.0, 1241.0, 1242.0, 1244.0, 1246.0, 1249.0, 1251.0, 1252.0, 1252.0, 1251.0, 1250.0, 1250.0, 1248.0, 1247.0, 1244.0, 1243.0, 1241.0, 1240.0, 1241.0, 1240.0, 1240.0, 1241.0, 1241.0, 1244.0, 1247.0, 1248.0, 1250.0, 1252.0, 1254.0, 1253.0, 1248.0, 1244.0, 1241.0, 1241.0, 1242.0, 1247.0, 1249.0, 1248.0, 1245.0, 1243.0, 1243.0, 1244.0, 1245.0, 1246.0, 1248.0, 1249.0, 1249.0, 1248.0, 1243.0, 1242.0, 1244.0, 1247.0, 1249.0, 1251.0, 1253.0, 1256.0, 1254.0, 1251.0, 1246.0, 1242.0, 1240.0, 1240.0, 1240.0, 1240.0, 1241.0, 1240.0, 1240.0, 1241.0, 1240.0, 1241.0, 1244.0, 1247.0, 1250.0, 1251.0, 1250.0, 1250.0, 1249.0, 1247.0, 1250.0, 1251.0, 1253.0, 1252.0, 1249.0]}, 'slices': {}}</td></tr>
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="about-metadata-2">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
|
|
Extracted Image quality metrics (IQMs)
|
|
</button>
|
|
</h2>
|
|
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
|
|
<div class="accordion-body metadata-table">
|
|
<table id="about-metadata-table-2" class="table table-sm table-striped">
|
|
<tr><td colspan=3>aor</td><td>0.0007121243523316062</td></tr>
|
|
<tr><td colspan=3>aqi</td><td>0.006400709637305699</td></tr>
|
|
<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>nstd</td><td>34.40372120364582</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>std</td><td>1.1233206286458333</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9864220179166668</td></tr>
|
|
<tr><td colspan=3>efc</td><td>0.5668</td></tr>
|
|
<tr><td colspan=3>fber</td><td>364.696</td></tr>
|
|
<tr><td>fd</td><td colspan=2>mean</td><td>0.0975259151724579</td></tr>
|
|
<tr><td>fd</td><td colspan=2>num</td><td>0</td></tr>
|
|
<tr><td>fd</td><td colspan=2>perc</td><td>0.0</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.208046264612907</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>x</td><td>3.1045941512869355</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>y</td><td>3.2460489392954837</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>z</td><td>3.2734957032563012</td></tr>
|
|
<tr><td colspan=3>gcor</td><td>0.0185733</td></tr>
|
|
<tr><td>gsr</td><td colspan=2>x</td><td>0.023697827011346817</td></tr>
|
|
<tr><td>gsr</td><td colspan=2>y</td><td>0.08885131776332855</td></tr>
|
|
<tr><td>size</td><td colspan=2>t</td><td>193</td></tr>
|
|
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
|
|
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
|
|
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
|
|
<tr><td colspan=3>snr</td><td>2.0807555811621294</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>k</td><td>17.3742</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mad</td><td>16.8079</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mean</td><td>74.3232</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>median</td><td>27.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>n</td><td>352610.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p95</td><td>334.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>stdv</td><td>124.6851</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>k</td><td>0.677</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mad</td><td>217.5162</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mean</td><td>535.6423</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>median</td><td>507.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>n</td><td>112030.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p05</td><td>161.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p95</td><td>986.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>stdv</td><td>243.6604</td></tr>
|
|
<tr><td colspan=3>tsnr</td><td>46.35125590569805</td></tr>
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
|
|
<div class="card-header m-0">
|
|
Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |