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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-background_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-02_session-01_subject-8007_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" style="">
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Problem loading figure sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg" target="_blank">sub-8007/figures/sub-8007_ses-01_task-RDMmotion_run-02_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8007/ses-01/func/sub-8007_ses-01_task-RDMmotion_run-02_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>55129028efa74063d1f9ee7c5317b97f</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>15:32:39.320000</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.998846, 0.0440895, -0.0190532, -0.0465803, 0.985949, -0.16042]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.25</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-02</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0442336</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-02</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>9</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1747, -9098, 4389, 591, -72, -377, -51, -2]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
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|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
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|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>219.976</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3949599266052246, -0.11168679594993591, -0.028110405430197716, 111.6758041381836], [-0.1057145819067955, 2.364037275314331, -0.3866933584213257, -82.14633178710938], [-0.04568440839648247, 0.3846430778503418, 2.368475914001465, -82.95899200439453], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['153239.320000', '153240.520000', '153241.720000', '153242.920000', '153244.120000', '153245.320000', '153246.520000', '153247.720000', '153248.920000', '153250.120000', '153251.320000', '153252.520000', '153253.720000', '153254.920000', '153256.120000', '153257.320000', '153258.520000', '153259.720000', '153300.920000', '153302.120000', '153303.320000', '153304.520000', '153305.720000', '153306.920000', '153308.120000', '153309.320000', '153310.520000', '153311.720000', '153312.920000', '153314.120000', '153315.320000', '153316.520000', '153317.720000', '153318.920000', '153320.120000', '153321.320000', '153322.520000', '153323.720000', '153324.920000', '153326.120000', '153327.320000', '153328.520000', '153329.720000', '153330.920000', '153332.120000', '153333.320000', '153334.520000', '153335.720000', '153336.920000', '153338.120000', '153339.320000', '153340.520000', '153341.720000', '153342.920000', '153344.120000', '153345.320000', '153346.520000', '153347.720000', '153348.920000', '153350.120000', '153351.320000', '153352.520000', '153353.720000', '153354.920000', '153356.120000', '153357.320000', '153358.520000', '153359.720000', '153400.920000', '153402.120000', '153403.320000', '153404.520000', '153405.720000', '153406.920000', '153408.120000', '153409.320000', '153410.520000', '153411.720000', '153412.920000', '153414.120000', '153415.320000', '153416.520000', '153417.720000', '153418.920000', '153420.120000', '153421.320000', '153422.520000', '153423.720000', '153424.920000', '153426.120000', '153427.320000', '153428.520000', '153429.720000', '153430.920000', '153432.120000', '153433.320000', '153434.520000', '153435.720000', '153436.920000', '153438.120000', '153439.320000', '153440.520000', '153441.720000', '153442.920000', '153444.120000', '153445.320000', '153446.520000', '153447.720000', '153448.920000', '153450.120000', '153451.320000', '153452.520000', '153453.720000', '153454.920000', '153456.120000', '153457.320000', '153458.520000', '153459.720000', '153500.920000', '153502.120000', '153503.320000', '153504.520000', '153505.720000', '153506.920000', '153508.120000'], 'ContentTime': ['153323.229000', '153323.232000', '153323.235000', '153323.237000', '153323.240000', '153323.243000', '153323.245000', '153323.248000', '153323.250000', '153323.259000', '153323.262000', '153323.264000', '153323.267000', '153323.270000', '153323.272000', '153323.275000', '153323.277000', '153323.280000', '153323.283000', '153323.285000', '153323.288000', '153323.290000', '153323.293000', '153323.295000', '153323.298000', '153323.301000', '153323.303000', '153323.306000', '153323.308000', '153323.311000', '153323.314000', '153323.316000', '153323.319000', '153323.322000', '153323.324000', '153403.224000', '153403.227000', '153403.230000', '153403.232000', '153403.235000', '153403.238000', '153403.240000', '153403.243000', '153403.246000', '153403.248000', '153403.251000', '153403.253000', '153403.256000', '153403.258000', '153403.261000', '153403.264000', '153403.266000', '153403.269000', '153403.271000', '153403.274000', '153403.277000', '153403.279000', '153403.282000', '153403.285000', '153403.287000', '153403.290000', '153403.292000', '153403.295000', '153403.298000', '153403.300000', '153403.303000', '153403.305000', '153403.308000', '153403.310000', '153443.226000', '153443.228000', '153443.231000', '153443.234000', '153443.237000', '153443.239000', '153443.242000', '153443.244000', '153443.247000', '153443.264000', '153443.266000', '153443.269000', '153443.271000', '153443.274000', '153443.277000', '153443.279000', '153443.290000', '153443.292000', '153443.295000', '153443.298000', '153443.300000', '153443.303000', '153443.305000', '153443.308000', '153443.311000', '153443.313000', '153443.316000', '153443.319000', '153443.321000', '153443.324000', '153443.326000', '153443.329000', '153443.331000', '153510.212000', '153510.215000', '153510.217000', '153510.220000', '153510.223000', '153510.225000', '153510.228000', '153510.230000', '153510.233000', '153510.236000', '153510.238000', '153510.241000', '153510.243000', '153510.246000', '153510.248000', '153510.251000', '153510.253000', '153510.256000', '153510.259000', '153510.261000', '153510.264000', '153510.266000', '153510.269000'], 'InstanceCreationTime': ['153323.229000', '153323.232000', '153323.235000', '153323.237000', '153323.240000', '153323.243000', '153323.245000', '153323.248000', '153323.250000', '153323.259000', '153323.262000', '153323.264000', '153323.267000', '153323.270000', '153323.272000', '153323.275000', '153323.277000', '153323.280000', '153323.283000', '153323.285000', '153323.288000', '153323.290000', '153323.293000', '153323.295000', '153323.298000', '153323.301000', '153323.303000', '153323.306000', '153323.308000', '153323.311000', '153323.314000', '153323.316000', '153323.319000', '153323.322000', '153323.324000', '153403.224000', '153403.227000', '153403.230000', '153403.232000', '153403.235000', '153403.238000', '153403.240000', '153403.243000', '153403.246000', '153403.248000', '153403.251000', '153403.253000', '153403.256000', '153403.258000', '153403.261000', '153403.264000', '153403.266000', '153403.269000', '153403.271000', '153403.274000', '153403.277000', '153403.279000', '153403.282000', '153403.285000', '153403.287000', '153403.290000', '153403.292000', '153403.295000', '153403.298000', '153403.300000', '153403.303000', '153403.305000', '153403.308000', '153403.310000', '153443.226000', '153443.228000', '153443.231000', '153443.234000', '153443.237000', '153443.239000', '153443.242000', '153443.244000', '153443.247000', '153443.264000', '153443.266000', '153443.269000', '153443.271000', '153443.274000', '153443.277000', '153443.279000', '153443.290000', '153443.292000', '153443.295000', '153443.298000', '153443.300000', '153443.303000', '153443.305000', '153443.308000', '153443.311000', '153443.313000', '153443.316000', '153443.319000', '153443.321000', '153443.324000', '153443.326000', '153443.329000', '153443.331000', '153510.212000', '153510.215000', '153510.217000', '153510.220000', '153510.223000', '153510.225000', '153510.228000', '153510.230000', '153510.233000', '153510.236000', '153510.238000', '153510.241000', '153510.243000', '153510.246000', '153510.248000', '153510.251000', '153510.253000', '153510.256000', '153510.259000', '153510.261000', '153510.264000', '153510.266000', '153510.269000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1907, 1903, 1890, 1873, 1866, 1846, 1848, 1816, 1827, 1899, 1874, 1897, 1892, 1866, 1841, 1837, 1844, 1900, 1881, 1872, 1874, 1885, 1887, 1878, 1879, 1875, 1853, 1856, 1844, 1837, 1865, 1853, 1883, 1853, 1870, 1860, 1841, 1843, 1817, 1817, 1834, 1813, 1834, 1821, 1837, 1839, 1828, 1823, 1819, 1807, 1819, 1829, 1806, 1828, 1813, 1830, 1827, 1853, 1857, 1870, 1849, 1883, 1878, 1875, 1885, 1870, 1873, 1867, 1855, 1870, 1862, 1856, 1836, 1842, 1850, 1888, 1876, 1874, 1877, 1884, 1885, 1885, 1885, 1851, 1835, 1885, 1880, 1881, 1875, 1878, 1869, 1866, 1853, 1830, 1835, 1833, 1824, 1820, 1874, 1866, 1862, 1857, 1821, 1823, 1846, 1884, 1875, 1881, 1870, 1886, 1857, 1837, 1823, 1855, 1811, 1816, 1832, 1813, 1847, 1876, 1856, 1810, 1796, 1815, 1812], 'WindowCenter': [596.0, 593.0, 592.0, 592.0, 591.0, 592.0, 593.0, 593.0, 594.0, 595.0, 594.0, 593.0, 593.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 595.0, 594.0, 594.0, 594.0, 594.0, 595.0, 595.0, 596.0, 595.0, 596.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 594.0, 593.0, 594.0, 593.0, 594.0, 594.0, 593.0, 594.0, 593.0, 594.0, 593.0, 594.0, 594.0, 595.0, 594.0, 595.0, 595.0, 595.0, 594.0, 595.0, 595.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 594.0, 595.0, 595.0, 595.0, 595.0, 594.0, 593.0, 593.0, 593.0, 594.0, 594.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 593.0, 594.0, 594.0, 594.0, 595.0, 595.0, 595.0, 594.0, 594.0, 594.0, 594.0, 594.0, 593.0, 594.0, 593.0, 593.0, 593.0, 593.0, 594.0, 594.0, 594.0, 593.0, 593.0, 593.0, 593.0], 'WindowWidth': [1272.0, 1266.0, 1263.0, 1263.0, 1261.0, 1263.0, 1266.0, 1267.0, 1268.0, 1270.0, 1268.0, 1267.0, 1265.0, 1265.0, 1266.0, 1266.0, 1267.0, 1268.0, 1267.0, 1267.0, 1268.0, 1267.0, 1267.0, 1268.0, 1268.0, 1269.0, 1268.0, 1269.0, 1268.0, 1269.0, 1270.0, 1270.0, 1271.0, 1271.0, 1271.0, 1268.0, 1268.0, 1267.0, 1266.0, 1266.0, 1266.0, 1265.0, 1266.0, 1266.0, 1268.0, 1268.0, 1267.0, 1267.0, 1267.0, 1267.0, 1268.0, 1267.0, 1267.0, 1267.0, 1267.0, 1268.0, 1266.0, 1268.0, 1268.0, 1270.0, 1269.0, 1270.0, 1269.0, 1269.0, 1269.0, 1269.0, 1270.0, 1268.0, 1269.0, 1268.0, 1267.0, 1267.0, 1267.0, 1268.0, 1270.0, 1271.0, 1269.0, 1269.0, 1267.0, 1266.0, 1266.0, 1266.0, 1267.0, 1267.0, 1267.0, 1268.0, 1267.0, 1266.0, 1266.0, 1266.0, 1265.0, 1267.0, 1267.0, 1266.0, 1266.0, 1266.0, 1267.0, 1266.0, 1267.0, 1267.0, 1266.0, 1269.0, 1268.0, 1269.0, 1269.0, 1270.0, 1269.0, 1268.0, 1268.0, 1268.0, 1267.0, 1268.0, 1267.0, 1269.0, 1267.0, 1267.0, 1267.0, 1267.0, 1267.0, 1268.0, 1267.0, 1266.0, 1266.0, 1266.0, 1267.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0008750806451612903</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0026172252419354837</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>31.01746700260162</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1232290668292682</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9950292012195118</td></tr>
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<tr><td colspan=3>efc</td><td>0.5189</td></tr>
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<tr><td colspan=3>fber</td><td>690.7469</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.17309104207166082</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>51</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>41.12903225806452</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3384379392487222</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.245886285265577</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.346786001817477</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.4226415306631117</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00493293</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.01201430894434452</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.07787209004163742</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.1812421626902267</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>40.2069</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>10.7489</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>49.0201</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>21.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>358684.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>180.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>83.6739</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.7789</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>216.6512</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>574.5239</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>544.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>105956.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>202.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1043.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>249.398</td></tr>
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<tr><td colspan=3>tsnr</td><td>58.06106270197779</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |