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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-background_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-03_session-01_subject-8006_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" style="">
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Problem loading figure sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg" target="_blank">sub-8006/figures/sub-8006_ses-01_task-RDMmotion_run-03_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8006/ses-01/func/sub-8006_ses-01_task-RDMmotion_run-03_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>b923d81f921a1780d60943cfab05c398</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>19:30:58.597500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.998014, 0.0384476, -0.0498984, -0.0433997, 0.993808, -0.102289]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0520264</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-03</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>11</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1741, -9068, 4403, 269, -89, -72, 6, -9]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.0775, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>217.047</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.392965316772461, -0.10406072437763214, -0.10957609117031097, 114.28421783447266], [-0.09218680113554001, 2.3828794956207275, -0.2502027750015259, -94.86282348632812], [-0.11964287608861923, 0.24526047706604004, 2.3844058513641357, -50.089759826660156], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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|
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['193058.597500', '193059.797500', '193100.997500', '193102.197500', '193103.397500', '193104.597500', '193105.797500', '193106.997500', '193108.197500', '193109.397500', '193110.597500', '193111.797500', '193112.997500', '193114.197500', '193115.397500', '193116.597500', '193117.797500', '193118.997500', '193120.197500', '193121.397500', '193122.597500', '193123.797500', '193124.997500', '193126.197500', '193127.397500', '193128.597500', '193129.797500', '193130.997500', '193132.197500', '193133.397500', '193134.597500', '193135.797500', '193136.997500', '193138.197500', '193139.397500', '193140.597500', '193141.797500', '193142.997500', '193144.197500', '193145.397500', '193146.597500', '193147.797500', '193148.997500', '193150.197500', '193151.397500', '193152.597500', '193153.797500', '193154.997500', '193156.197500', '193157.397500', '193158.597500', '193159.797500', '193200.997500', '193202.197500', '193203.397500', '193204.597500', '193205.797500', '193206.997500', '193208.197500', '193209.397500', '193210.597500', '193211.797500', '193212.997500', '193214.197500', '193215.397500', '193216.597500', '193217.797500', '193218.997500', '193220.197500', '193221.397500', '193222.597500', '193223.797500', '193224.997500', '193226.197500', '193227.397500', '193228.597500', '193229.797500', '193230.997500', '193232.197500', '193233.397500', '193234.597500', '193235.797500', '193236.997500', '193238.197500', '193239.397500', '193240.597500', '193241.797500', '193242.997500', '193244.197500', '193245.397500', '193246.597500', '193247.797500', '193248.997500', '193250.197500', '193251.397500', '193252.597500', '193253.797500', '193254.997500', '193256.197500', '193257.397500', '193258.597500', '193259.797500', '193300.997500', '193302.197500', '193303.397500', '193304.597500', '193305.797500', '193306.997500', '193308.197500', '193309.397500', '193310.597500', '193311.797500', '193312.997500', '193314.197500', '193315.397500', '193316.597500', '193317.797500', '193318.997500', '193320.197500', '193321.397500', '193322.597500', '193323.797500', '193324.997500', '193326.197500', '193327.397500'], 'ContentTime': ['193111.744000', '193111.747000', '193111.779000', '193111.781000', '193111.784000', '193111.786000', '193111.789000', '193111.792000', '193111.794000', '193111.797000', '193151.739000', '193151.742000', '193151.745000', '193151.748000', '193151.761000', '193151.764000', '193151.767000', '193151.769000', '193151.772000', '193151.774000', '193151.777000', '193151.780000', '193151.782000', '193151.785000', '193151.787000', '193151.790000', '193151.793000', '193151.795000', '193151.798000', '193151.800000', '193151.803000', '193151.805000', '193151.808000', '193151.810000', '193151.813000', '193151.816000', '193151.818000', '193151.821000', '193151.823000', '193151.826000', '193151.828000', '193151.831000', '193151.834000', '193231.739000', '193231.742000', '193231.745000', '193231.747000', '193231.750000', '193231.752000', '193231.755000', '193231.757000', '193231.760000', '193231.763000', '193231.765000', '193231.768000', '193231.770000', '193231.773000', '193231.775000', '193231.778000', '193231.781000', '193231.783000', '193231.786000', '193231.788000', '193231.791000', '193231.793000', '193231.796000', '193231.798000', '193231.801000', '193231.804000', '193231.806000', '193231.809000', '193231.811000', '193231.814000', '193231.816000', '193231.819000', '193231.821000', '193231.824000', '193311.741000', '193311.743000', '193311.746000', '193311.748000', '193311.751000', '193311.754000', '193311.756000', '193311.759000', '193311.761000', '193311.764000', '193311.766000', '193311.769000', '193311.772000', '193311.774000', '193311.777000', '193311.779000', '193311.782000', '193311.784000', '193311.787000', '193311.790000', '193311.792000', '193311.795000', '193311.797000', '193311.800000', '193311.802000', '193311.805000', '193311.808000', '193311.810000', '193311.813000', '193311.816000', '193311.818000', '193311.821000', '193311.823000', '193329.306000', '193329.311000', '193329.314000', '193329.316000', '193329.319000', '193329.322000', '193329.324000', '193329.327000', '193329.330000', '193329.339000', '193329.342000', '193329.345000', '193329.347000', '193329.350000', '193329.352000'], 'InstanceCreationTime': ['193111.744000', '193111.747000', '193111.779000', '193111.781000', '193111.784000', '193111.786000', '193111.789000', '193111.792000', '193111.794000', '193111.797000', '193151.739000', '193151.742000', '193151.745000', '193151.748000', '193151.761000', '193151.764000', '193151.767000', '193151.769000', '193151.772000', '193151.774000', '193151.777000', '193151.780000', '193151.782000', '193151.785000', '193151.787000', '193151.790000', '193151.793000', '193151.795000', '193151.798000', '193151.800000', '193151.803000', '193151.805000', '193151.808000', '193151.810000', '193151.813000', '193151.816000', '193151.818000', '193151.821000', '193151.823000', '193151.826000', '193151.828000', '193151.831000', '193151.834000', '193231.739000', '193231.742000', '193231.745000', '193231.747000', '193231.750000', '193231.752000', '193231.755000', '193231.757000', '193231.760000', '193231.763000', '193231.765000', '193231.768000', '193231.770000', '193231.773000', '193231.775000', '193231.778000', '193231.781000', '193231.783000', '193231.786000', '193231.788000', '193231.791000', '193231.793000', '193231.796000', '193231.798000', '193231.801000', '193231.804000', '193231.806000', '193231.809000', '193231.811000', '193231.814000', '193231.816000', '193231.819000', '193231.821000', '193231.824000', '193311.741000', '193311.743000', '193311.746000', '193311.748000', '193311.751000', '193311.754000', '193311.756000', '193311.759000', '193311.761000', '193311.764000', '193311.766000', '193311.769000', '193311.772000', '193311.774000', '193311.777000', '193311.779000', '193311.782000', '193311.784000', '193311.787000', '193311.790000', '193311.792000', '193311.795000', '193311.797000', '193311.800000', '193311.802000', '193311.805000', '193311.808000', '193311.810000', '193311.813000', '193311.816000', '193311.818000', '193311.821000', '193311.823000', '193329.306000', '193329.311000', '193329.314000', '193329.316000', '193329.319000', '193329.322000', '193329.324000', '193329.327000', '193329.330000', '193329.339000', '193329.342000', '193329.345000', '193329.347000', '193329.350000', '193329.352000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2638, 2550, 2470, 2468, 2427, 2423, 2422, 2415, 2413, 2409, 2412, 2415, 2401, 2407, 2397, 2412, 2408, 2433, 2392, 2415, 2397, 2411, 2393, 2400, 2390, 2395, 2359, 2364, 2383, 2384, 2378, 2387, 2371, 2379, 2374, 2391, 2363, 2387, 2372, 2372, 2370, 2374, 2379, 2375, 2380, 2379, 2390, 2367, 2365, 2364, 2369, 2380, 2372, 2381, 2382, 2372, 2376, 2362, 2372, 2366, 2394, 2365, 2346, 2384, 2357, 2377, 2374, 2360, 2372, 2350, 2373, 2364, 2372, 2358, 2357, 2387, 2352, 2358, 2362, 2348, 2374, 2365, 2373, 2350, 2379, 2348, 2367, 2379, 2366, 2355, 2382, 2356, 2370, 2359, 2357, 2371, 2368, 2382, 2365, 2359, 2350, 2370, 2355, 2360, 2373, 2360, 2360, 2398, 2357, 2376, 2395, 2381, 2398, 2381, 2352, 2349, 2363, 2366, 2372, 2389, 2396, 2367, 2375, 2372, 2364], 'WindowCenter': [631.0, 628.0, 626.0, 626.0, 626.0, 627.0, 627.0, 627.0, 627.0, 627.0, 628.0, 627.0, 627.0, 628.0, 628.0, 628.0, 628.0, 628.0, 628.0, 628.0, 628.0, 628.0, 628.0, 627.0, 628.0, 628.0, 627.0, 627.0, 626.0, 626.0, 626.0, 626.0, 626.0, 627.0, 627.0, 627.0, 627.0, 628.0, 628.0, 628.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 626.0, 626.0, 627.0, 626.0, 627.0, 627.0, 628.0, 628.0, 628.0, 628.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 626.0, 626.0, 626.0, 627.0, 626.0, 626.0, 626.0, 626.0, 626.0, 626.0, 627.0, 627.0, 627.0, 627.0, 626.0, 626.0, 626.0, 626.0, 625.0, 626.0, 626.0, 626.0, 626.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 627.0, 626.0, 626.0, 626.0, 626.0, 627.0, 626.0, 626.0, 627.0, 626.0, 626.0, 627.0, 627.0, 627.0, 627.0, 626.0, 626.0, 626.0, 626.0, 627.0, 627.0, 628.0, 627.0, 628.0, 628.0, 627.0], 'WindowWidth': [1356.0, 1348.0, 1345.0, 1343.0, 1345.0, 1346.0, 1347.0, 1348.0, 1349.0, 1348.0, 1348.0, 1347.0, 1348.0, 1349.0, 1349.0, 1349.0, 1350.0, 1351.0, 1350.0, 1349.0, 1349.0, 1349.0, 1349.0, 1348.0, 1349.0, 1349.0, 1348.0, 1347.0, 1346.0, 1346.0, 1345.0, 1345.0, 1345.0, 1347.0, 1347.0, 1348.0, 1348.0, 1349.0, 1349.0, 1349.0, 1348.0, 1348.0, 1347.0, 1347.0, 1347.0, 1347.0, 1348.0, 1347.0, 1346.0, 1346.0, 1345.0, 1346.0, 1346.0, 1347.0, 1348.0, 1349.0, 1350.0, 1350.0, 1350.0, 1348.0, 1348.0, 1347.0, 1347.0, 1348.0, 1348.0, 1348.0, 1347.0, 1346.0, 1346.0, 1345.0, 1346.0, 1346.0, 1346.0, 1345.0, 1345.0, 1345.0, 1345.0, 1346.0, 1346.0, 1347.0, 1346.0, 1345.0, 1345.0, 1344.0, 1344.0, 1343.0, 1343.0, 1345.0, 1345.0, 1345.0, 1346.0, 1347.0, 1348.0, 1347.0, 1347.0, 1348.0, 1348.0, 1349.0, 1348.0, 1347.0, 1346.0, 1346.0, 1345.0, 1346.0, 1347.0, 1346.0, 1346.0, 1347.0, 1344.0, 1344.0, 1346.0, 1347.0, 1347.0, 1347.0, 1345.0, 1345.0, 1344.0, 1345.0, 1348.0, 1348.0, 1349.0, 1348.0, 1348.0, 1349.0, 1348.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0018795967741935483</td></tr>
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<tr><td colspan=3>aqi</td><td>0.0032896850000000005</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>32.635915260000004</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.2107816613821138</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.008711541626016</td></tr>
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<tr><td colspan=3>efc</td><td>0.5046</td></tr>
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<tr><td colspan=3>fber</td><td>738.8044</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.13990782025058865</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>25</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>20.161290322580644</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>3.3346247162135856</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>3.30051718623335</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.302706759712859</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>3.400650202694547</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00507259</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.0054725417867302895</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.051301006227731705</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.1081240152472556</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.3999998569488525</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>46.1819</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>10.6652</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>57.5786</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>22.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>369127.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>255.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>105.2065</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.8928</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>255.988</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>628.324</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>601.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>95513.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>173.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>1139.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>285.0861</td></tr>
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<tr><td colspan=3>tsnr</td><td>58.45716757583432</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |