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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_run-05_session-01_subject-8005_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg" target="_blank">sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-stdev_bold.svg</a></small>
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-background_bold.svg" target="_blank">sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-background_bold.svg</a></small>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg" target="_blank">sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-zoomed_bold.svg</a></small>
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg" target="_blank">sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-carpet_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_run-05_session-01_subject-8005_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg" target="_blank">sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-mean_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-brainmask_bold.svg" style="width: 100%" />
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg" target="_blank">sub-8005/figures/sub-8005_ses-01_task-RDMmotion_run-05_desc-norm_bold.svg</a></small>
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8005/ses-01/func/sub-8005_ses-01_task-RDMmotion_run-05_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>22c5b2d7c00aff01883ca93586104bfd</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>12:00:44.725000</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.997424, -0.0480032, 0.0532933, 0.0522728, 0.995273, -0.0818458]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-05</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
<tr><td colspan=2>SAR</td><td>0.0559722</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-05</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>15</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[1763, -9088, 4400, 393, -46, -114, -11, -18]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1, 0.55, 0, 0.6275, 0.0775, 0.7075, 0.1575, 0.785, 0.235, 0.865, 0.3125, 0.9425, 0.3925, 1.0225, 0.47, 1.1]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>228.252</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3915517330169678, 0.1253359317779541, 0.1178700253367424, 99.62566375732422], [0.11509868502616882, 2.3863937854766846, -0.2026098519563675, -97.7523193359375], [0.12778274714946747, 0.19624385237693787, 2.38852596282959, -64.01099395751953], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['120044.725000', '120045.925000', '120047.125000', '120048.325000', '120049.525000', '120050.725000', '120051.925000', '120053.125000', '120054.325000', '120055.525000', '120056.725000', '120057.925000', '120059.125000', '120100.325000', '120101.525000', '120102.725000', '120103.925000', '120105.125000', '120106.325000', '120107.525000', '120108.725000', '120109.925000', '120111.125000', 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'120221.925000', '120223.125000', '120224.325000', '120225.525000', '120226.725000', '120227.925000', '120229.125000', '120230.325000', '120231.525000', '120232.725000', '120233.925000', '120235.125000', '120236.325000', '120237.525000', '120238.725000', '120239.925000', '120241.125000', '120242.325000', '120243.525000', '120244.725000', '120245.925000', '120247.125000', '120248.325000', '120249.525000', '120250.725000', '120251.925000', '120253.125000', '120254.325000', '120255.525000', '120256.725000', '120257.925000', '120259.125000', '120300.325000', '120301.525000', '120302.725000', '120303.925000', '120305.125000', '120306.325000', '120307.525000', '120308.725000', '120309.925000', '120311.125000', '120312.325000', '120313.525000'], 'ContentTime': ['120112.172000', '120112.175000', '120112.178000', '120112.180000', '120112.183000', '120112.186000', '120112.188000', '120112.191000', '120112.194000', '120112.196000', '120112.207000', '120112.220000', '120112.222000', '120112.225000', '120112.228000', '120112.230000', '120112.233000', '120112.244000', '120112.247000', '120112.249000', '120112.252000', '120112.255000', '120152.168000', '120152.171000', '120152.174000', '120152.177000', '120152.179000', '120152.182000', '120152.184000', '120152.187000', '120152.189000', '120152.192000', '120152.194000', '120152.197000', '120152.207000', '120152.209000', '120152.212000', '120152.215000', '120152.217000', '120152.220000', '120152.223000', '120152.225000', '120152.228000', '120152.230000', '120152.233000', '120152.235000', '120152.238000', '120152.241000', '120152.243000', '120152.246000', '120152.248000', '120152.251000', '120152.267000', '120152.270000', '120152.273000', '120232.169000', '120232.171000', '120232.174000', '120232.177000', '120232.179000', '120232.182000', '120232.185000', '120232.187000', '120232.190000', '120232.192000', '120232.195000', '120232.198000', '120232.200000', '120232.203000', '120232.205000', '120232.208000', '120232.210000', '120232.213000', '120232.216000', '120232.218000', '120232.221000', '120232.223000', '120232.226000', '120232.228000', '120232.231000', '120232.234000', '120232.237000', '120232.239000', '120232.242000', '120232.244000', '120232.247000', '120232.249000', '120232.252000', '120232.255000', '120312.168000', '120312.170000', '120312.174000', '120312.176000', '120312.179000', '120312.181000', '120312.184000', '120312.186000', '120312.189000', '120312.192000', '120312.194000', '120312.197000', '120312.199000', '120312.202000', '120312.204000', '120312.207000', '120312.210000', '120312.212000', '120312.215000', '120312.217000', '120312.220000', '120312.223000', '120312.225000', '120312.228000', '120312.230000', '120312.235000', '120312.237000', '120312.240000', '120312.243000', '120312.245000', '120312.248000', '120312.250000', '120312.253000', '120315.421000', '120315.424000', '120315.427000'], 'InstanceCreationTime': ['120112.172000', '120112.175000', '120112.178000', '120112.180000', '120112.183000', '120112.186000', '120112.188000', '120112.191000', '120112.194000', '120112.196000', '120112.207000', '120112.220000', '120112.222000', '120112.225000', '120112.228000', '120112.230000', '120112.233000', '120112.244000', '120112.247000', '120112.249000', '120112.252000', '120112.255000', '120152.168000', '120152.171000', '120152.174000', '120152.177000', '120152.179000', '120152.182000', '120152.184000', '120152.187000', '120152.189000', '120152.192000', '120152.194000', '120152.197000', '120152.207000', '120152.209000', '120152.212000', '120152.215000', '120152.217000', '120152.220000', '120152.223000', '120152.225000', '120152.228000', '120152.230000', '120152.233000', '120152.235000', '120152.238000', '120152.241000', '120152.243000', '120152.246000', '120152.248000', '120152.251000', '120152.267000', '120152.270000', '120152.273000', '120232.169000', '120232.171000', '120232.174000', '120232.177000', '120232.179000', '120232.182000', '120232.185000', '120232.187000', '120232.190000', '120232.192000', '120232.195000', '120232.198000', '120232.200000', '120232.203000', '120232.205000', '120232.208000', '120232.210000', '120232.213000', '120232.216000', '120232.218000', '120232.221000', '120232.223000', '120232.226000', '120232.228000', '120232.231000', '120232.234000', '120232.237000', '120232.239000', '120232.242000', '120232.244000', '120232.247000', '120232.249000', '120232.252000', '120232.255000', '120312.168000', '120312.170000', '120312.174000', '120312.176000', '120312.179000', '120312.181000', '120312.184000', '120312.186000', '120312.189000', '120312.192000', '120312.194000', '120312.197000', '120312.199000', '120312.202000', '120312.204000', '120312.207000', '120312.210000', '120312.212000', '120312.215000', '120312.217000', '120312.220000', '120312.223000', '120312.225000', '120312.228000', '120312.230000', '120312.235000', '120312.237000', '120312.240000', '120312.243000', '120312.245000', '120312.248000', '120312.250000', '120312.253000', '120315.421000', '120315.424000', '120315.427000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [2279, 2224, 2186, 2177, 2161, 2140, 2146, 2137, 2130, 2092, 2097, 2082, 2123, 2098, 2091, 2075, 2091, 2084, 2078, 2095, 2092, 2103, 2118, 2116, 2130, 2104, 2104, 2119, 2120, 2136, 2124, 2129, 2100, 2109, 2092, 2103, 2115, 2114, 2109, 2113, 2118, 2103, 2113, 2121, 2108, 2110, 2107, 2097, 2073, 2096, 2077, 2082, 2069, 2070, 2076, 2088, 2079, 2089, 2084, 2099, 2085, 2088, 2098, 2096, 2115, 2110, 2100, 2090, 2115, 2092, 2114, 2116, 2106, 2106, 2102, 2096, 2100, 2062, 2134, 2133, 2115, 2119, 2120, 2127, 2133, 2133, 2122, 2137, 2111, 2104, 2105, 2108, 2116, 2119, 2117, 2122, 2129, 2156, 2128, 2135, 2120, 2101, 2095, 2103, 2103, 2113, 2120, 2120, 2110, 2123, 2124, 2113, 2120, 2115, 2105, 2138, 2134, 2124, 2116, 2135, 2116, 2111, 2125, 2107, 2089], 'WindowCenter': [613.0, 609.0, 608.0, 608.0, 607.0, 606.0, 607.0, 606.0, 607.0, 606.0, 605.0, 604.0, 605.0, 605.0, 605.0, 603.0, 604.0, 604.0, 603.0, 603.0, 603.0, 603.0, 604.0, 604.0, 604.0, 605.0, 605.0, 606.0, 606.0, 606.0, 606.0, 606.0, 606.0, 606.0, 606.0, 606.0, 607.0, 608.0, 607.0, 607.0, 607.0, 606.0, 606.0, 607.0, 607.0, 606.0, 606.0, 606.0, 605.0, 606.0, 605.0, 605.0, 604.0, 605.0, 605.0, 606.0, 605.0, 606.0, 606.0, 607.0, 607.0, 607.0, 607.0, 608.0, 608.0, 607.0, 607.0, 607.0, 607.0, 607.0, 608.0, 607.0, 607.0, 607.0, 607.0, 607.0, 607.0, 608.0, 609.0, 609.0, 608.0, 607.0, 607.0, 606.0, 607.0, 607.0, 606.0, 606.0, 606.0, 606.0, 606.0, 606.0, 607.0, 607.0, 607.0, 607.0, 608.0, 609.0, 608.0, 608.0, 607.0, 606.0, 605.0, 606.0, 606.0, 606.0, 607.0, 606.0, 606.0, 606.0, 605.0, 605.0, 606.0, 607.0, 608.0, 609.0, 609.0, 610.0, 610.0, 611.0, 610.0, 609.0, 609.0, 608.0, 607.0], 'WindowWidth': [1301.0, 1291.0, 1289.0, 1289.0, 1287.0, 1286.0, 1287.0, 1286.0, 1287.0, 1285.0, 1284.0, 1282.0, 1282.0, 1283.0, 1282.0, 1279.0, 1281.0, 1280.0, 1279.0, 1280.0, 1279.0, 1279.0, 1281.0, 1281.0, 1282.0, 1283.0, 1284.0, 1285.0, 1284.0, 1286.0, 1284.0, 1285.0, 1285.0, 1286.0, 1286.0, 1286.0, 1288.0, 1289.0, 1287.0, 1287.0, 1287.0, 1286.0, 1286.0, 1287.0, 1287.0, 1286.0, 1286.0, 1285.0, 1284.0, 1285.0, 1284.0, 1283.0, 1282.0, 1283.0, 1283.0, 1284.0, 1284.0, 1286.0, 1287.0, 1287.0, 1289.0, 1287.0, 1289.0, 1290.0, 1290.0, 1288.0, 1287.0, 1287.0, 1288.0, 1288.0, 1289.0, 1289.0, 1288.0, 1287.0, 1289.0, 1288.0, 1288.0, 1290.0, 1292.0, 1291.0, 1289.0, 1288.0, 1287.0, 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</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
</button>
</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0021194354838709683</td></tr>
<tr><td colspan=3>aqi</td><td>0.004946990403225806</td></tr>
<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>33.246299789999995</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.1730397228455278</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0158764443089427</td></tr>
<tr><td colspan=3>efc</td><td>0.5655</td></tr>
<tr><td colspan=3>fber</td><td>396.5554</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.08606895346705967</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>5</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>4.032258064516129</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.112403843214271</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.0344777525488484</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.0585755726718955</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.2441582044220687</td></tr>
<tr><td colspan=3>gcor</td><td>0.0176684</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.0003653785679489374</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.07946144044399261</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>124</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.1611915123723615</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.4000000953674316</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>20.174</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>16.2608</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>77.4709</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>27.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>353530.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>13.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>354.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>134.2153</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>0.8677</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>222.9164</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>560.3901</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>532.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>111110.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>186.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1006.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>246.1594</td></tr>
<tr><td colspan=3>tsnr</td><td>51.64304777048528</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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<h2 class="accordion-header" id="qcartifacts-head">
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Record specific artifacts
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</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>