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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-background_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-04_session-01_subject-8004_suffix-bold_task-RDMmotion" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" style="">
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Problem loading figure sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg" target="_blank">sub-8004/figures/sub-8004_ses-01_task-RDMmotion_run-04_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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Provenance Information
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-8004/ses-01/func/sub-8004_ses-01_task-RDMmotion_run-04_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>c728e2318bf03c66fa9f71496b50b2d2</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>10:05:45.512500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>19.592</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>88</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11C_LATEST_20160120</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20190902</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>67050</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2.6e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.033</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>88</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000580014</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>62</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.997351, -0.068948, -0.0231983, 0.071491, 0.98795, 0.137271]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.251</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Olive_Street_60_Providence_RI_US_02912</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>BROWN_UNIVERSITY_MRF</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma_fit</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>4</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>88</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>2185</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>ASHENHAV_1222</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func-bold_task-RDMmotion_run-04</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>88</td></tr>
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<tr><td colspan=2>RefLinesPE</td><td>8</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>1.2</td></tr>
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<tr><td colspan=2>SAR</td><td>0.0437456</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_88</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>func-bold_task-RDMmotion_run-04</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>14</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[1740, -9175, 4427, 559, -64, -420, 144, 77]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>2.4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025, 0.55, 0, 0.63, 0.08, 0.7075, 0.1575, 0.7875, 0.235, 0.865, 0.315, 0.945, 0.3925, 1.0225, 0.4725, 1.1025]</td></tr>
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|
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.4</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP67050</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>RDMmotion</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.0504612</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>214.526</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.3913745880126953, 0.17141595482826233, -0.03228998929262161, 99.19923400878906], [0.16531838476657867, 2.368835210800171, 0.33255845308303833, -104.7194595336914], [-0.055623117834329605, -0.32913902401924133, 2.3766283988952637, -44.41888427734375], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 87.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>shape</td><td>[88, 88, 60, 125]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'AcquisitionTime': ['100545.512500', '100546.712500', '100547.912500', '100549.112500', '100550.312500', '100551.512500', '100552.712500', '100553.912500', '100555.112500', '100556.312500', '100557.512500', '100558.712500', '100559.912500', '100601.112500', '100602.312500', '100603.512500', '100604.712500', '100605.912500', '100607.112500', '100608.312500', '100609.512500', '100610.712500', '100611.912500', '100613.112500', '100614.312500', '100615.512500', '100616.712500', '100617.912500', '100619.112500', '100620.312500', '100621.512500', '100622.712500', '100623.912500', '100625.112500', '100626.312500', '100627.512500', '100628.712500', '100629.912500', '100631.112500', '100632.312500', '100633.512500', '100634.712500', '100635.912500', '100637.112500', '100638.312500', '100639.512500', '100640.712500', '100641.912500', '100643.112500', '100644.312500', '100645.512500', '100646.712500', '100647.912500', '100649.112500', '100650.312500', '100651.512500', '100652.712500', '100653.912500', '100655.112500', '100656.312500', '100657.512500', '100658.712500', '100659.912500', '100701.112500', '100702.312500', '100703.512500', '100704.712500', '100705.912500', '100707.112500', '100708.312500', '100709.512500', '100710.712500', '100711.912500', '100713.112500', '100714.312500', '100715.512500', '100716.712500', '100717.912500', '100719.112500', '100720.312500', '100721.512500', '100722.712500', '100723.912500', '100725.112500', '100726.312500', '100727.512500', '100728.712500', '100729.912500', '100731.112500', '100732.312500', '100733.512500', '100734.712500', '100735.912500', '100737.112500', '100738.312500', '100739.512500', '100740.712500', '100741.912500', '100743.112500', '100744.312500', '100745.512500', '100746.712500', '100747.912500', '100749.112500', '100750.312500', '100751.512500', '100752.712500', '100753.912500', '100755.112500', '100756.312500', '100757.512500', '100758.712500', '100759.912500', '100801.112500', '100802.312500', '100803.512500', '100804.712500', '100805.912500', '100807.112500', '100808.312500', '100809.512500', '100810.712500', '100811.912500', '100813.112500', '100814.312500'], 'ContentTime': ['100628.990000', '100628.993000', '100628.996000', '100628.998000', '100629.009000', '100629.011000', '100629.014000', '100629.016000', '100629.019000', '100629.021000', '100629.024000', '100629.026000', '100629.029000', '100629.032000', '100629.034000', '100629.037000', '100629.039000', '100629.042000', '100629.045000', '100629.047000', '100629.050000', '100629.052000', '100629.055000', '100629.057000', '100629.060000', '100629.063000', '100629.065000', '100629.068000', '100629.071000', '100629.073000', '100629.076000', '100629.085000', '100629.088000', '100629.090000', '100629.093000', '100629.095000', '100708.985000', '100708.988000', '100708.991000', '100708.994000', '100708.996000', '100709.000000', '100709.002000', '100709.005000', '100709.007000', '100709.010000', '100709.013000', '100709.015000', '100709.018000', '100709.020000', '100709.023000', '100709.026000', '100709.028000', '100709.037000', '100709.040000', '100709.042000', '100709.045000', '100709.047000', '100709.050000', '100709.052000', '100709.055000', '100709.057000', '100709.061000', '100709.063000', '100709.066000', '100709.068000', '100709.071000', '100709.074000', '100709.076000', '100748.984000', '100748.987000', '100748.990000', '100748.992000', '100749.001000', '100749.003000', '100749.006000', '100749.009000', '100749.011000', '100749.014000', '100749.016000', '100749.019000', '100749.022000', '100749.024000', '100749.027000', '100749.030000', '100749.032000', '100749.035000', '100749.037000', '100749.040000', '100749.043000', '100749.046000', '100749.048000', '100749.051000', '100749.054000', '100749.057000', '100749.060000', '100749.062000', '100749.065000', '100749.067000', '100749.070000', '100749.073000', '100749.075000', '100815.507000', '100815.510000', '100815.512000', '100815.515000', '100815.518000', '100815.520000', '100815.523000', '100815.525000', '100815.528000', '100815.531000', '100815.533000', '100815.536000', '100815.538000', '100815.541000', '100815.544000', '100815.559000', '100815.562000', '100815.565000', '100815.567000', '100815.570000', '100815.573000', '100815.575000', '100815.578000'], 'InstanceCreationTime': ['100628.990000', '100628.993000', '100628.996000', '100628.998000', '100629.009000', '100629.011000', '100629.014000', '100629.016000', '100629.019000', '100629.021000', '100629.024000', '100629.026000', '100629.029000', '100629.032000', '100629.034000', '100629.037000', '100629.039000', '100629.042000', '100629.045000', '100629.047000', '100629.050000', '100629.052000', '100629.055000', '100629.057000', '100629.060000', '100629.063000', '100629.065000', '100629.068000', '100629.071000', '100629.073000', '100629.076000', '100629.085000', '100629.088000', '100629.090000', '100629.093000', '100629.095000', '100708.985000', '100708.988000', '100708.991000', '100708.994000', '100708.996000', '100709.000000', '100709.002000', '100709.005000', '100709.007000', '100709.010000', '100709.013000', '100709.015000', '100709.018000', '100709.020000', '100709.023000', '100709.026000', '100709.028000', '100709.037000', '100709.040000', '100709.042000', '100709.045000', '100709.047000', '100709.050000', '100709.052000', '100709.055000', '100709.057000', '100709.061000', '100709.063000', '100709.066000', '100709.068000', '100709.071000', '100709.074000', '100709.076000', '100748.984000', '100748.987000', '100748.990000', '100748.992000', '100749.001000', '100749.003000', '100749.006000', '100749.009000', '100749.011000', '100749.014000', '100749.016000', '100749.019000', '100749.022000', '100749.024000', '100749.027000', '100749.030000', '100749.032000', '100749.035000', '100749.037000', '100749.040000', '100749.043000', '100749.046000', '100749.048000', '100749.051000', '100749.054000', '100749.057000', '100749.060000', '100749.062000', '100749.065000', '100749.067000', '100749.070000', '100749.073000', '100749.075000', '100815.507000', '100815.510000', '100815.512000', '100815.515000', '100815.518000', '100815.520000', '100815.523000', '100815.525000', '100815.528000', '100815.531000', '100815.533000', '100815.536000', '100815.538000', '100815.541000', '100815.544000', '100815.559000', '100815.562000', '100815.565000', '100815.567000', '100815.570000', '100815.573000', '100815.575000', '100815.578000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125], 'LargestImagePixelValue': [1979, 1632, 1696, 1630, 1656, 1576, 1713, 1534, 1589, 1744, 1667, 1690, 1760, 1551, 1674, 1811, 1688, 1782, 1568, 1762, 1650, 1597, 1578, 1480, 1533, 1431, 1705, 1478, 1705, 1615, 1577, 1976, 1485, 1687, 1442, 1954, 1785, 1687, 1601, 1719, 1692, 1618, 1491, 1633, 1678, 1574, 1781, 1730, 1755, 1563, 1535, 1863, 1602, 1554, 1538, 1522, 1507, 1556, 1500, 1478, 1475, 1564, 1521, 1744, 2009, 1506, 1471, 1671, 1520, 1710, 1623, 1692, 1821, 1591, 1591, 1525, 1599, 1618, 1733, 1658, 1559, 1659, 1756, 1732, 1523, 1583, 1548, 1585, 1683, 1744, 1691, 1922, 1791, 1637, 1636, 1544, 1656, 1519, 1632, 1564, 1606, 1632, 1965, 1669, 1655, 1585, 1520, 1598, 1561, 1646, 1687, 1681, 1588, 1750, 1835, 1749, 1670, 1580, 1735, 1765, 1729, 1690, 1649, 1464, 1726], 'WindowCenter': [549.0, 542.0, 541.0, 539.0, 539.0, 538.0, 541.0, 538.0, 539.0, 542.0, 541.0, 541.0, 541.0, 538.0, 540.0, 542.0, 540.0, 541.0, 538.0, 540.0, 539.0, 538.0, 537.0, 536.0, 538.0, 537.0, 541.0, 538.0, 541.0, 539.0, 538.0, 543.0, 536.0, 540.0, 536.0, 544.0, 542.0, 541.0, 540.0, 541.0, 540.0, 538.0, 537.0, 539.0, 540.0, 539.0, 542.0, 541.0, 541.0, 537.0, 536.0, 541.0, 537.0, 537.0, 536.0, 536.0, 536.0, 537.0, 537.0, 536.0, 537.0, 538.0, 537.0, 541.0, 544.0, 537.0, 537.0, 541.0, 538.0, 542.0, 540.0, 542.0, 543.0, 539.0, 538.0, 537.0, 538.0, 539.0, 541.0, 540.0, 539.0, 540.0, 541.0, 541.0, 538.0, 539.0, 539.0, 539.0, 541.0, 541.0, 540.0, 543.0, 541.0, 539.0, 539.0, 537.0, 539.0, 537.0, 539.0, 537.0, 538.0, 539.0, 544.0, 540.0, 540.0, 539.0, 538.0, 539.0, 539.0, 540.0, 541.0, 541.0, 540.0, 543.0, 544.0, 542.0, 541.0, 539.0, 541.0, 541.0, 541.0, 540.0, 540.0, 537.0, 541.0], 'WindowWidth': [1155.0, 1143.0, 1140.0, 1136.0, 1136.0, 1135.0, 1140.0, 1136.0, 1138.0, 1141.0, 1140.0, 1140.0, 1140.0, 1135.0, 1138.0, 1141.0, 1138.0, 1140.0, 1134.0, 1137.0, 1135.0, 1134.0, 1133.0, 1131.0, 1134.0, 1133.0, 1139.0, 1135.0, 1139.0, 1136.0, 1134.0, 1143.0, 1132.0, 1137.0, 1132.0, 1145.0, 1142.0, 1140.0, 1138.0, 1139.0, 1138.0, 1135.0, 1133.0, 1136.0, 1138.0, 1137.0, 1141.0, 1139.0, 1139.0, 1133.0, 1131.0, 1138.0, 1132.0, 1132.0, 1131.0, 1131.0, 1132.0, 1134.0, 1132.0, 1132.0, 1133.0, 1135.0, 1133.0, 1139.0, 1143.0, 1133.0, 1133.0, 1139.0, 1136.0, 1142.0, 1140.0, 1141.0, 1142.0, 1137.0, 1135.0, 1132.0, 1135.0, 1137.0, 1140.0, 1139.0, 1136.0, 1139.0, 1140.0, 1140.0, 1135.0, 1137.0, 1137.0, 1138.0, 1139.0, 1140.0, 1139.0, 1143.0, 1140.0, 1136.0, 1136.0, 1133.0, 1136.0, 1133.0, 1135.0, 1133.0, 1135.0, 1136.0, 1144.0, 1138.0, 1138.0, 1137.0, 1135.0, 1138.0, 1137.0, 1139.0, 1140.0, 1141.0, 1139.0, 1144.0, 1145.0, 1143.0, 1141.0, 1137.0, 1139.0, 1139.0, 1139.0, 1138.0, 1137.0, 1133.0, 1139.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0006869105691056912</td></tr>
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<tr><td colspan=3>aqi</td><td>0.004800197886178861</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>33.34831547336066</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.1656932889344265</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9907113901639346</td></tr>
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<tr><td colspan=3>efc</td><td>0.5138</td></tr>
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<tr><td colspan=3>fber</td><td>783.5775</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.11884863258744298</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>4</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>3.252032520325203</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>2.870134101949045</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>2.730414811411625</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>3.0577873262192723</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>2.8222001682162383</td></tr>
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<tr><td colspan=3>gcor</td><td>0.00711331</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.013352055102586746</td></tr>
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<tr><td>gsr</td><td colspan=2>y</td><td>0.07920143008232117</td></tr>
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<tr><td>size</td><td colspan=2>t</td><td>123</td></tr>
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<tr><td>size</td><td colspan=2>x</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>y</td><td>88</td></tr>
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<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
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<tr><td colspan=3>snr</td><td>2.5379420834281388</td></tr>
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<tr><td>spacing</td><td colspan=2>tr</td><td>1.2000000476837158</td></tr>
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<tr><td>spacing</td><td colspan=2>x</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>y</td><td>2.3977272510528564</td></tr>
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<tr><td>spacing</td><td colspan=2>z</td><td>2.3999998569488525</td></tr>
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<tr><td>summary</td><td>bg</td><td>k</td><td>21.4493</td></tr>
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<tr><td>summary</td><td>bg</td><td>mad</td><td>7.4371</td></tr>
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<tr><td>summary</td><td>bg</td><td>mean</td><td>44.8261</td></tr>
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<tr><td>summary</td><td>bg</td><td>median</td><td>18.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>n</td><td>370378.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p05</td><td>12.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>p95</td><td>180.0</td></tr>
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<tr><td>summary</td><td>bg</td><td>stdv</td><td>72.2075</td></tr>
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<tr><td>summary</td><td>fg</td><td>k</td><td>0.1491</td></tr>
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<tr><td>summary</td><td>fg</td><td>mad</td><td>183.0893</td></tr>
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<tr><td>summary</td><td>fg</td><td>mean</td><td>516.9193</td></tr>
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<tr><td>summary</td><td>fg</td><td>median</td><td>513.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>n</td><td>94262.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p05</td><td>139.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>p95</td><td>852.0</td></tr>
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<tr><td>summary</td><td>fg</td><td>stdv</td><td>202.1312</td></tr>
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<tr><td colspan=3>tsnr</td><td>51.935824011452496</td></tr>
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</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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</h2>
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<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
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<div class="accordion-body">
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<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
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|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |