openneuro-mriqc24.0.2/ds004645
Watch
2
0
Fork
You've already forked ds004645
 0
Code Activity
No description
46 commits 17 branches 0 tags 844 MiB
  • HTML 99.7%
  • Shell 0.3%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter f602c87459 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "41728c71-9a82-48f6-957c-555d5bff0dbb",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-03-27 07:29:59 +01:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-03-27 03:06:57 +01:00
code SLURM submission setup 2026-03-27 03:07:08 +01:00
duct-logs Merge results 2026-03-27 07:24:14 +01:00
sourcedata Register ds004645 BIDS dataset as input 2026-03-27 03:07:03 +01:00
sub-01 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-05 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-06 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14 move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15 move data to dataset root 2026-03-27 07:24:32 +01:00
.bidsignore move data to dataset root 2026-03-27 07:24:32 +01:00
.gitattributes keep non-binary files in git 2026-03-27 03:06:47 +01:00
.gitignore SLURM submission setup 2026-03-27 03:07:08 +01:00
.gitmodules Register ds004645 BIDS dataset as input 2026-03-27 03:07:03 +01:00
CHANGELOG.md Apply YODA dataset setup 2026-03-27 03:06:46 +01:00
dataset_description.json move data to dataset root 2026-03-27 07:24:32 +01:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 07:29:33 +01:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 07:29:33 +01:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 07:29:33 +01:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-03-27 07:29:33 +01:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-03-27 07:29:59 +01:00
README.md add README with Acknowledgements 2026-03-27 03:06:48 +01:00
sub-01_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-01_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-01_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-01_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-01_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-01_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-01_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-02_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-03_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-04_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-05_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-06_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-07_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-08_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-09_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-10_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-11_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-12_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-13_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-14_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_T1w.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-breathhold_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-breathhold_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-checker_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-checker_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-checker_run-03_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-rest_run-01_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00
sub-15_task-rest_run-02_bold.html move data to dataset root 2026-03-27 07:24:32 +01:00

README.md

ds004645 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds004645.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).