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609 lines
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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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About
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<h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
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</noscript>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-stdev_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-background_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-zoomed_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-carpet_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-mean_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-brainmask_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_run-2_subject-00053_suffix-bold_task-fMRI" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-norm_bold.svg" style="">
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Problem loading figure sub-00053/figures/sub-00053_task-fMRI_run-2_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-00053/figures/sub-00053_task-fMRI_run-2_desc-norm_bold.svg" target="_blank">sub-00053/figures/sub-00053_task-fMRI_run-2_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-0">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-00053/func/sub-00053_task-fMRI_run-2_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>ee0ae3035f01d78f6c0e27492a798358</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td>AcqNr</td><td>6</td></tr>
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<tr><td>Angulation</td><td>[0.0, 0.0, -20.0]</td></tr>
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<tr><td>CardiacPhaseNumber</td><td>1</td></tr>
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<tr><td>DataID</td><td>SNS_MRI_MCarpet_S00053_01</td></tr>
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<tr><td>Diffusion</td><td>0</td></tr>
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<tr><td>DiffusionBFactor</td><td>0.0</td></tr>
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<tr><td>DiffusionBValueNumber</td><td>1</td></tr>
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<tr><td>DiffusionEchoTime</td><td>0.0</td></tr>
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<tr><td>DynScan</td><td>1</td></tr>
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<tr><td>DynamicScanNumber</td><td>[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337]</td></tr>
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<tr><td>EchoNumber</td><td>1</td></tr>
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<tr><td>EchoTime</td><td>0.03</td></tr>
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<tr><td>EffectiveEchoSpacing</td><td>0.000594</td></tr>
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<tr><td>EpiFactor</td><td>53</td></tr>
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<tr><td>ExamDate</td><td>2018-11-15T14:21:37</td></tr>
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<tr><td>ExamName</td><td>KWC</td></tr>
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<tr><td>FlowCompensation</td><td>1</td></tr>
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<tr><td>Fov</td><td>[240.0, 150.6, 240.0]</td></tr>
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<tr><td>ImageAngulation</td><td>[-20.0, 0.0]</td></tr>
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<tr><td>ImageDisplayOrientation</td><td>0</td></tr>
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<tr><td>ImagePixelSize</td><td>16</td></tr>
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<tr><td>ImageTypeMr</td><td>0</td></tr>
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<tr><td>MaxCardiacPhases</td><td>1</td></tr>
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<tr><td>MaxDiffusionValues</td><td>1</td></tr>
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<tr><td>MaxDynamics</td><td>337</td></tr>
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<tr><td>MaxEchoes</td><td>1</td></tr>
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<tr><td>MaxGradientOrient</td><td>1</td></tr>
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<tr><td>MaxMixes</td><td>1</td></tr>
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<tr><td>MaxSlices</td><td>42</td></tr>
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<tr><td>MriKey</td><td>SNS_MRI_MCarpet_S00053_01</td></tr>
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<tr><td>Mtc</td><td>0</td></tr>
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<tr><td>NrLabelTypes</td><td>0</td></tr>
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<tr><td>OffCenter</td><td>[0.0, 0.0, 0.0]</td></tr>
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<tr><td>PatientName</td><td>SN</td></tr>
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<tr><td>PatientPosition</td><td>HFS</td></tr>
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<tr><td>PhaseEncVelocity</td><td>[0.0, 0.0, 0.0]</td></tr>
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<tr><td>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td>PixelSpacing</td><td>3.0</td></tr>
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<tr><td>PrepDirection</td><td>RL</td></tr>
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<tr><td>Presaturation</td><td>0</td></tr>
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<tr><td>ProtocolName</td><td>fMRI_Run2_split SENSE</td></tr>
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<tr><td>ReconNr</td><td>1</td></tr>
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<tr><td>ReconResolution</td><td>80</td></tr>
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<tr><td>RepetitionTime</td><td>2.5</td></tr>
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<tr><td>RescaleIntercept</td><td>0.0</td></tr>
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<tr><td>RescaleSlope</td><td>2.73626</td></tr>
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|
<tr><td>ScaleSlope</td><td>0.00115844</td></tr>
|
|
<tr><td>ScanDuration</td><td>859.92</td></tr>
|
|
<tr><td>ScanMode</td><td>MS</td></tr>
|
|
<tr><td>ScanResolution</td><td>[80, 79]</td></tr>
|
|
<tr><td>SeriesType</td><td>Image MRSERIES</td></tr>
|
|
<tr><td>SliceGap</td><td>0.6</td></tr>
|
|
<tr><td>SliceOrientation</td><td>1</td></tr>
|
|
<tr><td>SliceThickness</td><td>3.0</td></tr>
|
|
<tr><td>SliceTiming</td><td>[0.0, 0.05952, 0.11904, 0.17856, 0.23808, 0.2976, 0.35712, 0.41664, 0.47616, 0.53568, 0.5952, 0.65472, 0.71424, 0.77376, 0.83328, 0.8928, 0.95232, 1.01184, 1.07136, 1.13088, 1.1904, 1.24992, 1.30944, 1.36896, 1.42848, 1.488, 1.54752, 1.60704, 1.66656, 1.72608, 1.7856, 1.84512, 1.90464, 1.96416, 2.02368, 2.0832, 2.14272, 2.20224, 2.26176, 2.32128, 2.3808, 2.44032]</td></tr>
|
|
<tr><td>Spir</td><td>1</td></tr>
|
|
<tr><td>TaskName</td><td>fMRI</td></tr>
|
|
<tr><td>Tech</td><td>FEEPI</td></tr>
|
|
<tr><td>TotalReadoutTime</td><td>0.031482</td></tr>
|
|
<tr><td>TriggerTime</td><td>0.0</td></tr>
|
|
<tr><td>WaterFatShift</td><td>13.93</td></tr>
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="about-metadata-2">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
|
|
Extracted Image quality metrics (IQMs)
|
|
</button>
|
|
</h2>
|
|
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
|
|
<div class="accordion-body metadata-table">
|
|
<table id="about-metadata-table-2" class="table table-sm table-striped">
|
|
<tr><td colspan=3>aor</td><td>0.0009876854599406527</td></tr>
|
|
<tr><td colspan=3>aqi</td><td>0.006379318545994066</td></tr>
|
|
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>nstd</td><td>18.392191764613084</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>std</td><td>1.0360516769047625</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9381280674702387</td></tr>
|
|
<tr><td colspan=3>efc</td><td>0.3573</td></tr>
|
|
<tr><td colspan=3>fber</td><td>7173687.5</td></tr>
|
|
<tr><td>fd</td><td colspan=2>mean</td><td>0.09604393109147641</td></tr>
|
|
<tr><td>fd</td><td colspan=2>num</td><td>26</td></tr>
|
|
<tr><td>fd</td><td colspan=2>perc</td><td>7.71513353115727</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>avg</td><td>2.3222170550163983</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>x</td><td>2.3840866666666667</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>y</td><td>2.54647</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>z</td><td>2.0360944983825284</td></tr>
|
|
<tr><td colspan=3>gcor</td><td>0.0234956</td></tr>
|
|
<tr><td>gsr</td><td colspan=2>x</td><td>-0.011007573455572128</td></tr>
|
|
<tr><td>gsr</td><td colspan=2>y</td><td>0.00040327111491933465</td></tr>
|
|
<tr><td>size</td><td colspan=2>t</td><td>337</td></tr>
|
|
<tr><td>size</td><td colspan=2>x</td><td>80</td></tr>
|
|
<tr><td>size</td><td colspan=2>y</td><td>80</td></tr>
|
|
<tr><td>size</td><td colspan=2>z</td><td>42</td></tr>
|
|
<tr><td colspan=3>snr</td><td>3.143537274550814</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>tr</td><td>2.5</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>x</td><td>3.0</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>y</td><td>3.0</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>z</td><td>3.5999999046325684</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>k</td><td>80.6687</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mad</td><td>0.6886</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mean</td><td>25.0149</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>median</td><td>0.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>n</td><td>228771.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p05</td><td>0.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p95</td><td>136.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>stdv</td><td>80.7854</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>k</td><td>1.0842</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mad</td><td>274.4979</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mean</td><td>1184.4801</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>median</td><td>1244.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>n</td><td>40029.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p05</td><td>324.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p95</td><td>1703.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>stdv</td><td>395.7276</td></tr>
|
|
<tr><td colspan=3>tsnr</td><td>67.38401596993208</td></tr>
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
|
|
<div class="card-header m-0">
|
|
Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
</div>
|
|
<div class="card-body">
|
|
<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
|
|
</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |